CX288805

Overview
NameCX288805
Unique NameCX288805
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length565
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1068 contig Ccv1_Contig1068:1..562. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288805 vs. ExPASy Swiss-Prot
Match: UXS1_RAT (UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1 PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 3.180e-51
Identity = 97/168 (57.74%), Postives = 123/168 (73.21%), Query Frame = 3
Query:   18 RSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKI*FRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 521
            R+CYDEGKR AET+   Y +  GVEVR+ARIFNT+GPRM ++DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM      P NLGNP E T+LE AQ+++  +   ++I F    +DDP KRKPDI +AK +LGWEP V L +GL K +  FR+ +
Sbjct:  228 RACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 395          
BLAST of CX288805 vs. ExPASy Swiss-Prot
Match: UXS1_PONAB (UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 3.180e-51
Identity = 97/168 (57.74%), Postives = 123/168 (73.21%), Query Frame = 3
Query:   18 RSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKI*FRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 521
            R+CYDEGKR AET+   Y +  GVEVR+ARIFNT+GPRM ++DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM      P NLGNP E T+LE AQ+++  +   ++I F    +DDP KRKPDI +AK +LGWEP V L +GL K +  FR+ +
Sbjct:  228 RACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 395          
BLAST of CX288805 vs. ExPASy Swiss-Prot
Match: UXS1_MOUSE (UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 3.180e-51
Identity = 97/168 (57.74%), Postives = 123/168 (73.21%), Query Frame = 3
Query:   18 RSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKI*FRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 521
            R+CYDEGKR AET+   Y +  GVEVR+ARIFNT+GPRM ++DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM      P NLGNP E T+LE AQ+++  +   ++I F    +DDP KRKPDI +AK +LGWEP V L +GL K +  FR+ +
Sbjct:  228 RACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 395          
BLAST of CX288805 vs. ExPASy Swiss-Prot
Match: UXS1_HUMAN (UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 3.180e-51
Identity = 97/168 (57.74%), Postives = 123/168 (73.21%), Query Frame = 3
Query:   18 RSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKI*FRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 521
            R+CYDEGKR AET+   Y +  GVEVR+ARIFNT+GPRM ++DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM      P NLGNP E T+LE AQ+++  +   ++I F    +DDP KRKPDI +AK +LGWEP V L +GL K +  FR+ +
Sbjct:  228 RACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 395          
BLAST of CX288805 vs. ExPASy Swiss-Prot
Match: UXS1_DANRE (UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 6.631e-49
Identity = 94/168 (55.95%), Postives = 121/168 (72.02%), Query Frame = 3
Query:   18 RSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKI*FRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 521
            R+CYDEGKR AET+   Y +  GVEVR+ARIFNT+G RM ++DGRVVSNF+ QAL+ E LTVYG G QTR+FQ+VSDLV GL+ LM      P NLGNP E T+LE AQ+++  +   + I F P  +DDP +R+PDI +AK LLGWEP V L +GL K ++ F + +
Sbjct:  226 RACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGSRMHMNDGRVVSNFILQALQGEALTVYGSGSQTRAFQYVSDLVNGLVSLMNSNISSPVNLGNPEEHTILEFAQLIKSLVASRSHIQFLPEAQDDPQRRRPDIRKAKLLLGWEPVVPLEEGLNKTIQYFSREL 393          
BLAST of CX288805 vs. ExPASy Swiss-Prot
Match: UXS1_XENTR (UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.131e-48
Identity = 92/168 (54.76%), Postives = 123/168 (73.21%), Query Frame = 3
Query:   18 RSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKI*FRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 521
            R+CYDEGKR AET+   Y +  GVEVR+ARIFNT+GPRM ++DGRVVSNF+ QAL+ E LTVYG G+QTR+FQ+VSDLV GL+ LM      P NLGNP E ++++ A+++++ +    +I F    +DDP +RKPDI +AK LLGWEP V L +GL K +  FR+ +
Sbjct:  229 RACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEQLTVYGSGEQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPQEHSIVQFARLIKQLVGSGGEISFLSEAQDDPQRRKPDIRKAKLLLGWEPVVPLEEGLNKTIHYFRKEL 396          
BLAST of CX288805 vs. ExPASy Swiss-Prot
Match: YTCB_BACSU (Uncharacterized UDP-glucose epimerase ytcB OS=Bacillus subtilis GN=ytcB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.349e-17
Identity = 50/158 (31.65%), Postives = 84/158 (53.16%), Query Frame = 3
Query:   21 SCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHV--GPFNLGNPGEFTMLELAQVVQETIDPNAKI*FRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGL 488
            S Y   K T E L   Y +  G+ + I R F  YGPR   D        + Q L+++PLT++GDG+Q+R F ++SD V+G+  ++   H+     N+G     ++L++  ++++     A + F      +P     DIS+AK+LL ++P  SL+ GL
Sbjct:  147 SPYGVTKLTGEKLCHVYKQSFGIPIVILRFFTVYGPRQRPD--MAFHRLIKQHLQQKPLTIFGDGQQSRDFTYISDCVKGITAVLGKPHLIGETVNIGGAERASVLKVVSLIEDISGRKATLHFSDKIAGEPSNTWADISKAKQLLHYDPATSLKDGL 302          
BLAST of CX288805 vs. ExPASy Swiss-Prot
Match: GME_ARATH (GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana GN=At5g28840 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.069e-14
Identity = 53/160 (33.12%), Postives = 79/160 (49.38%), Query Frame = 3
Query:   18 RSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGR--VVSNFVAQALRK-EPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKI*FRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGL 488
            +  Y   K   E L   Y++  G+E RI R  N YGP      GR    + F  +A    +   ++GDG QTRSF F+ + VEG++RL + +   P N+G+    +M E+A++V    +    I   P  E     R  D +  KE LGW P + L++GL
Sbjct:  171 QDAYGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPE-GVRGRNSDNNLIKEKLGWAPNMRLKEGL 329          
BLAST of CX288805 vs. ExPASy Swiss-Prot
Match: GME2_ORYSJ (GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp. japonica GN=GME-2 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.069e-14
Identity = 53/160 (33.12%), Postives = 78/160 (48.75%), Query Frame = 3
Query:   18 RSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGR--VVSNFVAQALRK-EPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKI*FRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGL 488
            +  Y   K   E L   Y +  G+E R+ R  N YGP      GR    + F  +AL   +   ++GDG QTRSF F+ + VEG++RL + +   P N+G+    +M E+A++V    +    I   P  E     R  D +  KE LGW P + L+ GL
Sbjct:  165 QDAYGLEKLATEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFENKQLPIHHIPGPE-GVRGRNSDNTLIKEKLGWAPTMRLKDGL 323          
BLAST of CX288805 vs. ExPASy Swiss-Prot
Match: GME1_ORYSJ (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. japonica GN=GME-1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.823e-14
Identity = 52/160 (32.50%), Postives = 77/160 (48.12%), Query Frame = 3
Query:   18 RSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGR--VVSNFVAQALRK-EPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKI*FRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGL 488
            +  Y   K   E L   Y +  G+E R+ R  N YGP      GR    + F  +A    +   ++GDG QTRSF F+ + VEG++RL + +   P N+G+    +M E+A+++    D    I   P  E     R  D +  KE LGW P + L+ GL
Sbjct:  172 QDAYGLEKLATEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIILSFEDRELPIHHIPGPE-GVRGRNSDNTLIKEKLGWAPTMKLKDGL 330          
The following BLAST results are available for this feature:
BLAST of CX288805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
UXS1_RAT3.180e-5157.74UDP-glucuronic acid decarboxylase 1 OS=Rattus norv... [more]
UXS1_PONAB3.180e-5157.74UDP-glucuronic acid decarboxylase 1 OS=Pongo abeli... [more]
UXS1_MOUSE3.180e-5157.74UDP-glucuronic acid decarboxylase 1 OS=Mus musculu... [more]
UXS1_HUMAN3.180e-5157.74UDP-glucuronic acid decarboxylase 1 OS=Homo sapien... [more]
UXS1_DANRE6.631e-4955.95UDP-glucuronic acid decarboxylase 1 OS=Danio rerio... [more]
UXS1_XENTR1.131e-4854.76UDP-glucuronic acid decarboxylase 1 OS=Xenopus tro... [more]
YTCB_BACSU1.349e-1731.65Uncharacterized UDP-glucose epimerase ytcB OS=Baci... [more]
GME_ARATH1.069e-1433.13GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana ... [more]
GME2_ORYSJ1.069e-1433.13GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp.... [more]
GME1_ORYSJ1.823e-1432.50GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02004F02SK IF1 Citrus clementina cDNA clone C02004F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288805 ID=CX288805; Name=CX288805; organism=Citrus clementina; type=EST; length=565bp
AATTCGGCACGAGGGTCCGAAGTTGTTACGATGAGGGAAAGCGAACTGCT
GAAACGTTGACCATGGACTACCACAGAGGAGCTGGCGTGGAGGTTAGGAT
TGCTAGAATTTTCAACACTTATGGACCCCGTATGTGTATCGATGATGGTC
GCGTTGTCAGTAATTTTGTTGCTCAGGCTTTAAGGAAGGAGCCTTTGACT
GTATATGGAGATGGGAAGCAGACTAGGAGTTTCCAATTTGTTTCTGATTT
GGTGGAGGGTCTGATGCGCCTCATGGAGGGAGAACATGTGGGTCCTTTTA
ATCTTGGAAATCCGGGTGAATTTACCATGCTTGAACTTGCTCAGGTGGTC
CAGGAAACAATTGACCCAAATGCAAAAATATAGTTCAGGCCCAACACTGA
AGATGATCCACACAAGAGGAAGCCTGATATCTCAAGGGCTAAAGAGCTTC
TTGGTTGGGAACCAAAGGTATCATTGAGGAAGGGTCTCCCCAAGATGGTC
AAAGATTTCCGGCAGCGTATCTTTGGTGACCACAAGGAAGGTGGTGCAGG
TGCCACCCCCGACAC
back to top