CX288808

Overview
NameCX288808
Unique NameCX288808
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length539
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288808 vs. ExPASy Swiss-Prot
Match: Y5195_ARATH (UPF0717 protein At5g11950 OS=Arabidopsis thaliana GN=At5g11950 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.421e-34
Identity = 67/103 (65.05%), Postives = 83/103 (80.58%), Query Frame = 3
Query:    3 MARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNAKELVQKLEEYVPVHDGVIAKASWEVDK 311
            MA+ ++ FIALPGGYGT+EELLE+ITW+QLGIH K VGLLNVDGYYN LL   D  V++GFIKP  RNI+VSAP AKEL++K+EEY P H  V +  SW+V++
Sbjct:  102 MAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSAPTAKELMEKMEEYTPSHMHVASHESWKVEE 204          
BLAST of CX288808 vs. ExPASy Swiss-Prot
Match: YJF5_YEAST (UPF0717 protein YJL055W OS=Saccharomyces cerevisiae GN=YJL055W PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.992e-20
Identity = 44/87 (50.57%), Postives = 62/87 (71.26%), Query Frame = 3
Query:    3 MARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNAKELVQKLEEYV 263
            MA  SD F+A+PGGYGT EE++E ITW+QLGIH+KP+ L N+DG+Y+ LL F+  ++ + FI      II  A   +E+V K+E+YV
Sbjct:  137 MANLSDAFVAMPGGYGTFEEIMECITWSQLGIHNKPIILFNIDGFYDKLLEFLKHSIQERFISVKNGEIIQVASTPQEVVDKIEKYV 223          
BLAST of CX288808 vs. ExPASy Swiss-Prot
Match: Y4923_PSEAE (UPF0717 protein PA4923 OS=Pseudomonas aeruginosa GN=PA4923 PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 8.369e-19
Identity = 44/88 (50.00%), Postives = 59/88 (67.05%), Query Frame = 3
Query:    3 MARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNAKELVQKLEEYVP 266
            MA  +D FIALPGG GTLEEL EV TW QLG H KP+GLL V+G+Y+ LLTF+D  VD+ F++   R ++    + + L+  L  + P
Sbjct:   96 MAELADAFIALPGGLGTLEELFEVWTWGQLGYHAKPLGLLEVNGFYDPLLTFLDHLVDERFVRAEHRGMLQRGASPEALLDALAAWTP 183          
BLAST of CX288808 vs. ExPASy Swiss-Prot
Match: YVDD_BACSU (UPF0717 protein yvdD OS=Bacillus subtilis GN=yvdD PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.592e-17
Identity = 36/86 (41.86%), Postives = 59/86 (68.60%), Query Frame = 3
Query:    3 MARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIVSAPNAKELVQKLEEY 260
            M+  +D FI++PGG+GT EEL EV+ WAQ+GIH KP+GL NV+GY+  ++  +  ++ +GF   S   +I S+    EL+++++ Y
Sbjct:   94 MSELADGFISMPGGFGTYEELFEVLCWAQIGIHQKPIGLYNVNGYFEPMMKMVKYSIQEGFSNESHLKLIHSSSRPDELIEQMQNY 179          
BLAST of CX288808 vs. ExPASy Swiss-Prot
Match: FAS6_RHOFA (UPF0717 protein ORF6 in fasciation locus OS=Rhodococcus fascians GN=fas6 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.613e-15
Identity = 37/71 (52.11%), Postives = 50/71 (70.42%), Query Frame = 3
Query:    3 MARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIIV 215
            MA   D FIALPGG GT EE  EV+TW+ LG+H+KP  LLN + YY  LL++I+ A  +GFI P+ R+ ++
Sbjct:  113 MAELGDAFIALPGGVGTAEEFFEVLTWSHLGLHNKPCVLLNDNEYYRPLLSYIEHAAVEGFITPATRSRVI 183          
The following BLAST results are available for this feature:
BLAST of CX288808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
Y5195_ARATH1.421e-3465.05UPF0717 protein At5g11950 OS=Arabidopsis thaliana ... [more]
YJF5_YEAST1.992e-2050.57UPF0717 protein YJL055W OS=Saccharomyces cerevisia... [more]
Y4923_PSEAE8.369e-1950.00UPF0717 protein PA4923 OS=Pseudomonas aeruginosa G... [more]
YVDD_BACSU4.592e-1741.86UPF0717 protein yvdD OS=Bacillus subtilis GN=yvdD ... [more]
FAS6_RHOFA5.613e-1552.11UPF0717 protein ORF6 in fasciation locus OS=Rhodoc... [more]
back to top
Properties
Property NameValue
Genbank descriptionC02004F05SK IF1 Citrus clementina cDNA clone C02004F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288808 ID=CX288808; Name=CX288808; organism=Citrus clementina; type=EST; length=539bp
AAATGGCCCGCCACTCTGATTGTTTTATTGCCCTTCCAGGTGGATATGGA
ACTTTGGAGGAGTTGTTAGAAGTAATCACATGGGCTCAACTGGGTATCCA
TGACAAGCCTGTGGGTTTATTGAATGTTGATGGTTATTATAACTATCTTC
TCACTTTCATTGACAAAGCCGTTGATGATGGCTTTATCAAGCCTTCTCAG
CGCAACATCATTGTCTCAGCACCAAACGCCAAAGAACTTGTTCAAAAACT
TGAGGAGTACGTGCCTGTGCATGATGGAGTGATAGCCAAAGCAAGCTGGG
AGGTTGACAAACAACAAGCACAGCAGCAAGTGGGGTTCAAGGCTACAACT
TTGCAGACTGAGGTCGCTAGCGCTCTATAAAAGAGAGACAGATATCTAAA
GATGAAGAAAAAAGTTGGGGGAAAATTTATTTTAGGTCTTTTGCTTTTAT
CATTTTGATGCTTTGGGTCATATACCAAGTGTAGTATAATGGTATATGTA
AGGTTTGAATGAATTAATGACTTGGGAGATAAAAGGAGA
back to top