CX288809
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX288809 vs. ExPASy Swiss-Prot
Match: RL172_ARATH (60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2) HSP 1 Score: 294.664 bits (753), Expect = 1.445e-79 Identity = 142/159 (89.31%), Postives = 151/159 (94.97%), Query Frame = 2 Query: 2 KYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLNVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKE 478 KYS+EPDN TKSCKARGSDLRVHFKNTRE AHA+RKL L KAKRYLEDV+AHKQAIPFTRFCRGVGRTAQAKNR+ NGQGRWP KSA+F+LDLLKNAESNAEVKGL+VDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIEL LSEKEEPVKKE Sbjct: 3 KYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKE 161
BLAST of CX288809 vs. ExPASy Swiss-Prot
Match: RL171_ARATH (60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=1 SV=1) HSP 1 Score: 293.123 bits (749), Expect = 4.204e-79 Identity = 141/159 (88.68%), Postives = 151/159 (94.97%), Query Frame = 2 Query: 2 KYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLNVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKE 478 KYS+EPDN TKSCKARG+DLRVHFKNTRE AHA+RKL L KAKRYLEDV+AHKQAIPFTRFCRGVGRTAQAKNR+ NGQGRWP KSA+F+LDLLKNAESNAEVKGL+VDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIEL LSEKEEPVKKE Sbjct: 3 KYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKE 161
BLAST of CX288809 vs. ExPASy Swiss-Prot
Match: RL171_HORVU (60S ribosomal protein L17-1 OS=Hordeum vulgare PE=2 SV=1) HSP 1 Score: 285.419 bits (729), Expect = 8.766e-77 Identity = 138/159 (86.79%), Postives = 145/159 (91.19%), Query Frame = 2 Query: 2 KYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLNVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKE 478 KYS +P NPTKS KA G DLRVHFKNTRE A ALRK+ L KAKRYLEDV+AHKQAIPF R+CRGVGRTAQ KNR PNGQGRWP KSAKF+LDLLKNAESNAEVKGL+VDALYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIEL LSEKEEPVKKE Sbjct: 3 KYSTDPANPTKSAKAMGRDLRVHFKNTRETAFALRKMPLNKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKE 161
BLAST of CX288809 vs. ExPASy Swiss-Prot
Match: RL17_MAIZE (60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1) HSP 1 Score: 282.337 bits (721), Expect = 7.421e-76 Identity = 138/159 (86.79%), Postives = 147/159 (92.45%), Query Frame = 2 Query: 2 KYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLNVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKE 478 KYS+EP NPTKS KA G DLRVHFKNTRE A ALRKL LTKAKRYLEDV+AHKQAIPF R+C GVGRTAQAK+R+ NGQGRWPVKSA+FILDLLKNAESNA+VKGL+VD LY+SHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL LSEKEEPVKKE Sbjct: 3 KYSQEPGNPTKSAKAMGRDLRVHFKNTRETAFALRKLPLTKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKE 161
BLAST of CX288809 vs. ExPASy Swiss-Prot
Match: RL172_HORVU (60S ribosomal protein L17-2 OS=Hordeum vulgare PE=2 SV=1) HSP 1 Score: 281.182 bits (718), Expect = 1.653e-75 Identity = 135/159 (84.91%), Postives = 145/159 (91.19%), Query Frame = 2 Query: 2 KYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLNVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKE 478 KYS++P NPTKS KA G DLRVHFKNTRE A ALR++ L KAKRYLEDV+AHKQAIPF R+CRGVGRTAQ KNR PNGQGRWP KSA+F+LDLLKNAESNAEVKGL+VD LYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIEL LSEKEEPVKKE Sbjct: 3 KYSRDPSNPTKSAKACGKDLRVHFKNTRETAFALRRMPLGKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKE 161
BLAST of CX288809 vs. ExPASy Swiss-Prot
Match: RL17_PODCA (60S ribosomal protein L17 OS=Podocoryne carnea GN=RPL17 PE=2 SV=1) HSP 1 Score: 225.328 bits (573), Expect = 1.077e-58 Identity = 112/158 (70.89%), Postives = 131/158 (82.91%), Query Frame = 2 Query: 2 KYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLNVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK 475 KYS +P+NP KSCKARGS LRVHFKNTRE A A++K+ + KA RYL+DV+A KQ IPF RFC GVGR AQAK + QGRWPVKSA+F+L LLKNAESNA+VKGL+VD+L I HIQVN+A RRRTYRAHGRINPYMSSPCHIE+ +SEKE+ V + Sbjct: 3 KYSIDPENPIKSCKARGSYLRVHFKNTRETAQAIKKMHIRKAYRYLKDVIAKKQIIPFRRFCGGVGRKAQAKAFK-HTQGRWPVKSAEFLLGLLKNAESNADVKGLDVDSLVIDHIQVNRAPYMRRRTYRAHGRINPYMSSPCHIEMIVSEKEQVVPR 159
BLAST of CX288809 vs. ExPASy Swiss-Prot
Match: RL17_SUBDO (60S ribosomal protein L17 OS=Suberites domuncula GN=RPL17 PE=2 SV=1) HSP 1 Score: 220.32 bits (560), Expect = 3.463e-57 Identity = 109/159 (68.55%), Postives = 125/159 (78.62%), Query Frame = 2 Query: 2 KYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKN-RNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLNVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK 475 +Y+ EP+NP KSCKARG DLRVHFKNTRE A A++ + L KA RYL DV+ KQ IPF RF GVGR AQAKN + P QGRWP KSA+F++ LL+NAESNAEVK LN DAL I HIQVN+A RRRTYRAHGRINPYM+SPCHIE+ L EK+E V K Sbjct: 3 RYAIEPENPAKSCKARGEDLRVHFKNTRETAQAIKGMHLKKALRYLNDVIEKKQIIPFRRFSGGVGRKAQAKNFKTPGSQGRWPKKSAQFLIQLLRNAESNAEVKMLNTDALVIDHIQVNRAAHLRRRTYRAHGRINPYMTSPCHIEMFLVEKDEAVPK 161
BLAST of CX288809 vs. ExPASy Swiss-Prot
Match: RL17_HUMAN (60S ribosomal protein L17 OS=Homo sapiens GN=RPL17 PE=1 SV=3) HSP 1 Score: 215.698 bits (548), Expect = 8.530e-56 Identity = 105/158 (66.46%), Postives = 128/158 (81.01%), Query Frame = 2 Query: 2 KYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLNVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK 475 +YS +P+NPTKSCK+RGS+LRVHFKNTRE A A++ + + KA +YL+DV KQ +PF R+ GVGR AQAK QGRWP KSA+F+L +LKNAESNAE+KGL+VD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+EKE+ V K Sbjct: 3 RYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK 159
BLAST of CX288809 vs. ExPASy Swiss-Prot
Match: RL17_FELCA (60S ribosomal protein L17 OS=Felis catus GN=RPL17 PE=2 SV=3) HSP 1 Score: 215.698 bits (548), Expect = 8.530e-56 Identity = 105/158 (66.46%), Postives = 128/158 (81.01%), Query Frame = 2 Query: 2 KYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLNVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK 475 +YS +P+NPTKSCK+RGS+LRVHFKNTRE A A++ + + KA +YL+DV KQ +PF R+ GVGR AQAK QGRWP KSA+F+L +LKNAESNAE+KGL+VD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+EKE+ V K Sbjct: 3 RYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK 159
BLAST of CX288809 vs. ExPASy Swiss-Prot
Match: RL17_RAT (60S ribosomal protein L17 OS=Rattus norvegicus GN=Rpl17 PE=2 SV=3) HSP 1 Score: 215.312 bits (547), Expect = 1.114e-55 Identity = 105/158 (66.46%), Postives = 128/158 (81.01%), Query Frame = 2 Query: 2 KYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLNVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK 475 +YS +P+NPTKSCK+RGS+LRVHFKNTRE A A++ + + KA +YL+DV KQ +PF R+ GVGR AQAK QGRWP KSA+F+L +LKNAESNAE+KGL+VD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+EKE+ V K Sbjct: 3 RYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK 159 The following BLAST results are available for this feature:
BLAST of CX288809 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 91
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288809 ID=CX288809; Name=CX288809; organism=Citrus clementina; type=EST; length=480bpback to top |