CX288809

Overview
NameCX288809
Unique NameCX288809
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length480
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig154 contig Ccv1_Contig154:1..480. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288809 vs. ExPASy Swiss-Prot
Match: RL172_ARATH (60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2)

HSP 1 Score: 294.664 bits (753), Expect = 1.445e-79
Identity = 142/159 (89.31%), Postives = 151/159 (94.97%), Query Frame = 2
Query:    2 KYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLNVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKE 478
            KYS+EPDN TKSCKARGSDLRVHFKNTRE AHA+RKL L KAKRYLEDV+AHKQAIPFTRFCRGVGRTAQAKNR+ NGQGRWP KSA+F+LDLLKNAESNAEVKGL+VDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIEL LSEKEEPVKKE
Sbjct:    3 KYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKE 161          
BLAST of CX288809 vs. ExPASy Swiss-Prot
Match: RL171_ARATH (60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=1 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 4.204e-79
Identity = 141/159 (88.68%), Postives = 151/159 (94.97%), Query Frame = 2
Query:    2 KYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLNVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKE 478
            KYS+EPDN TKSCKARG+DLRVHFKNTRE AHA+RKL L KAKRYLEDV+AHKQAIPFTRFCRGVGRTAQAKNR+ NGQGRWP KSA+F+LDLLKNAESNAEVKGL+VDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIEL LSEKEEPVKKE
Sbjct:    3 KYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKE 161          
BLAST of CX288809 vs. ExPASy Swiss-Prot
Match: RL171_HORVU (60S ribosomal protein L17-1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 8.766e-77
Identity = 138/159 (86.79%), Postives = 145/159 (91.19%), Query Frame = 2
Query:    2 KYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLNVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKE 478
            KYS +P NPTKS KA G DLRVHFKNTRE A ALRK+ L KAKRYLEDV+AHKQAIPF R+CRGVGRTAQ KNR PNGQGRWP KSAKF+LDLLKNAESNAEVKGL+VDALYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIEL LSEKEEPVKKE
Sbjct:    3 KYSTDPANPTKSAKAMGRDLRVHFKNTRETAFALRKMPLNKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKE 161          
BLAST of CX288809 vs. ExPASy Swiss-Prot
Match: RL17_MAIZE (60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 7.421e-76
Identity = 138/159 (86.79%), Postives = 147/159 (92.45%), Query Frame = 2
Query:    2 KYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLNVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKE 478
            KYS+EP NPTKS KA G DLRVHFKNTRE A ALRKL LTKAKRYLEDV+AHKQAIPF R+C GVGRTAQAK+R+ NGQGRWPVKSA+FILDLLKNAESNA+VKGL+VD LY+SHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL LSEKEEPVKKE
Sbjct:    3 KYSQEPGNPTKSAKAMGRDLRVHFKNTRETAFALRKLPLTKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKE 161          
BLAST of CX288809 vs. ExPASy Swiss-Prot
Match: RL172_HORVU (60S ribosomal protein L17-2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 1.653e-75
Identity = 135/159 (84.91%), Postives = 145/159 (91.19%), Query Frame = 2
Query:    2 KYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLNVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKE 478
            KYS++P NPTKS KA G DLRVHFKNTRE A ALR++ L KAKRYLEDV+AHKQAIPF R+CRGVGRTAQ KNR PNGQGRWP KSA+F+LDLLKNAESNAEVKGL+VD LYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIEL LSEKEEPVKKE
Sbjct:    3 KYSRDPSNPTKSAKACGKDLRVHFKNTRETAFALRRMPLGKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKE 161          
BLAST of CX288809 vs. ExPASy Swiss-Prot
Match: RL17_PODCA (60S ribosomal protein L17 OS=Podocoryne carnea GN=RPL17 PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.077e-58
Identity = 112/158 (70.89%), Postives = 131/158 (82.91%), Query Frame = 2
Query:    2 KYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLNVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK 475
            KYS +P+NP KSCKARGS LRVHFKNTRE A A++K+ + KA RYL+DV+A KQ IPF RFC GVGR AQAK    + QGRWPVKSA+F+L LLKNAESNA+VKGL+VD+L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ +SEKE+ V +
Sbjct:    3 KYSIDPENPIKSCKARGSYLRVHFKNTRETAQAIKKMHIRKAYRYLKDVIAKKQIIPFRRFCGGVGRKAQAKAFK-HTQGRWPVKSAEFLLGLLKNAESNADVKGLDVDSLVIDHIQVNRAPYMRRRTYRAHGRINPYMSSPCHIEMIVSEKEQVVPR 159          
BLAST of CX288809 vs. ExPASy Swiss-Prot
Match: RL17_SUBDO (60S ribosomal protein L17 OS=Suberites domuncula GN=RPL17 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 3.463e-57
Identity = 109/159 (68.55%), Postives = 125/159 (78.62%), Query Frame = 2
Query:    2 KYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKN-RNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLNVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK 475
            +Y+ EP+NP KSCKARG DLRVHFKNTRE A A++ + L KA RYL DV+  KQ IPF RF  GVGR AQAKN + P  QGRWP KSA+F++ LL+NAESNAEVK LN DAL I HIQVN+A   RRRTYRAHGRINPYM+SPCHIE+ L EK+E V K
Sbjct:    3 RYAIEPENPAKSCKARGEDLRVHFKNTRETAQAIKGMHLKKALRYLNDVIEKKQIIPFRRFSGGVGRKAQAKNFKTPGSQGRWPKKSAQFLIQLLRNAESNAEVKMLNTDALVIDHIQVNRAAHLRRRTYRAHGRINPYMTSPCHIEMFLVEKDEAVPK 161          
BLAST of CX288809 vs. ExPASy Swiss-Prot
Match: RL17_HUMAN (60S ribosomal protein L17 OS=Homo sapiens GN=RPL17 PE=1 SV=3)

HSP 1 Score: 215.698 bits (548), Expect = 8.530e-56
Identity = 105/158 (66.46%), Postives = 128/158 (81.01%), Query Frame = 2
Query:    2 KYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLNVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK 475
            +YS +P+NPTKSCK+RGS+LRVHFKNTRE A A++ + + KA +YL+DV   KQ +PF R+  GVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGL+VD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+EKE+ V K
Sbjct:    3 RYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK 159          
BLAST of CX288809 vs. ExPASy Swiss-Prot
Match: RL17_FELCA (60S ribosomal protein L17 OS=Felis catus GN=RPL17 PE=2 SV=3)

HSP 1 Score: 215.698 bits (548), Expect = 8.530e-56
Identity = 105/158 (66.46%), Postives = 128/158 (81.01%), Query Frame = 2
Query:    2 KYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLNVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK 475
            +YS +P+NPTKSCK+RGS+LRVHFKNTRE A A++ + + KA +YL+DV   KQ +PF R+  GVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGL+VD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+EKE+ V K
Sbjct:    3 RYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK 159          
BLAST of CX288809 vs. ExPASy Swiss-Prot
Match: RL17_RAT (60S ribosomal protein L17 OS=Rattus norvegicus GN=Rpl17 PE=2 SV=3)

HSP 1 Score: 215.312 bits (547), Expect = 1.114e-55
Identity = 105/158 (66.46%), Postives = 128/158 (81.01%), Query Frame = 2
Query:    2 KYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLNVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK 475
            +YS +P+NPTKSCK+RGS+LRVHFKNTRE A A++ + + KA +YL+DV   KQ +PF R+  GVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGL+VD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+EKE+ V K
Sbjct:    3 RYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK 159          
The following BLAST results are available for this feature:
BLAST of CX288809 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RL172_ARATH1.445e-7989.3160S ribosomal protein L17-2 OS=Arabidopsis thalian... [more]
RL171_ARATH4.204e-7988.6860S ribosomal protein L17-1 OS=Arabidopsis thalian... [more]
RL171_HORVU8.766e-7786.7960S ribosomal protein L17-1 OS=Hordeum vulgare PE=... [more]
RL17_MAIZE7.421e-7686.7960S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=... [more]
RL172_HORVU1.653e-7584.9160S ribosomal protein L17-2 OS=Hordeum vulgare PE=... [more]
RL17_PODCA1.077e-5870.8960S ribosomal protein L17 OS=Podocoryne carnea GN=... [more]
RL17_SUBDO3.463e-5768.5560S ribosomal protein L17 OS=Suberites domuncula G... [more]
RL17_HUMAN8.530e-5666.4660S ribosomal protein L17 OS=Homo sapiens GN=RPL17... [more]
RL17_FELCA8.530e-5666.4660S ribosomal protein L17 OS=Felis catus GN=RPL17 ... [more]
RL17_RAT1.114e-5566.4660S ribosomal protein L17 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC02004F07SK IF1 Citrus clementina cDNA clone C02004F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288809 ID=CX288809; Name=CX288809; organism=Citrus clementina; type=EST; length=480bp
GAAGTATTCGAAAGAGCCGGACAATCCCACCAAGTCATGCAAAGCTAGAG
GCTCTGATCTCCGTGTTCACTTCAAGAACACTAGGGAGGCAGCCCATGCT
CTTAGAAAGCTGTCTTTGACCAAGGCTAAAAGGTACTTGGAGGATGTTAT
GGCTCACAAGCAAGCCATACCATTCACCCGCTTCTGTCGCGGTGTTGGGC
GAACTGCACAGGCTAAAAACCGTAATCCAAATGGTCAAGGTCGCTGGCCG
GTTAAATCTGCAAAGTTCATTCTGGATTTACTCAAGAATGCTGAGAGTAA
TGCAGAGGTGAAAGGCTTAAATGTGGACGCGCTTTACATTTCTCACATCC
AAGTGAATCAAGCCCAGAAGCAGAGGCGTCGGACTTATCGTGCACATGGA
AGGATTAACCCATACATGTCTTCCCCATGTCATATTGAGTTGACACTCTC
AGAAAAGGAGGAACCTGTGAAGAAAGAGCC
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