CX288811

Overview
NameCX288811
Unique NameCX288811
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length480
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX288811 vs. ExPASy Swiss-Prot
Match: FDFT_NICBE (Squalene synthetase OS=Nicotiana benthamiana PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 8.059e-22
Identity = 53/96 (55.21%), Postives = 62/96 (64.58%), Query Frame = 2 
Query:    5 GTRAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKACMDSGVLNKRKSYIIQSELRYSSTMXXXXXXXXXXXXSYLSSTRA 292
            G  AKVIDRT  + DVY AF+DFS +LK K+N NDPNATKTL R+E I K C DSG LNKRKSYII+SE  YS  +            + LS  R+
Sbjct:  316 GLTAKVIDRTRTIADVYGAFFDFSCMLKSKVNNNDPNATKTLKRLEVILKTCRDSGTLNKRKSYIIRSEPNYSPVLIVVIFIILAIILAQLSGNRS 411
[Close]
BLAST of CX288811 vs. ExPASy Swiss-Prot
Match: FDFT_ARATH (Squalene synthetase OS=Arabidopsis thaliana GN=SQS1 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.866e-19
Identity = 44/65 (67.69%), Postives = 53/65 (81.54%), Query Frame = 2 
Query:    5 GTRAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRVEAIQKACMDSGVLNKRKSYI 199
            G  AKVIDRT  M DVY AFYDFS +LK K++KNDPNA+KTL+R+EA+QK C D+GVL  RKSY+
Sbjct:  318 GLTAKVIDRTKTMADVYGAFYDFSCMLKTKVDKNDPNASKTLNRLEAVQKLCRDAGVLQNRKSYV 382
The following BLAST results are available for this feature:
BLAST of CX288811 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FDFT_NICBE8.059e-2255.21Squalene synthetase OS=Nicotiana benthamiana PE=2 ... [more]
FDFT_ARATH2.866e-1967.69Squalene synthetase OS=Arabidopsis thaliana GN=SQS... [more]
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Properties
Property NameValue
Genbank descriptionC02004F09SK IF1 Citrus clementina cDNA clone C02004F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288811 ID=CX288811; Name=CX288811; organism=Citrus clementina; type=EST; length=480bp
ATTCGGCACGAGGGCTAAAGTCATTGACCGAACAAACAACATGACTGATG
TCTATCTTGCCTTCTATGATTTTTCCAATATTCTGAAACCCAAGATTAAC
AAGAATGATCCAAATGCGACAAAAACATTGAGCAGGGTGGAAGCAATACA
GAAAGCTTGCATGGACTCTGGAGTCCTAAACAAAAGAAAATCTTACATTA
TTCAAAGTGAGCTGCGATATAGTTCAACCATGATTGTCATATTTTTCATC
ATACTGGCCATTATTTTCTCTTACCTCTCTTCCACCCGAGCAAGCAAGTA
GTAGGATCACCACCATCTTTAACTTATTGCCGGGACCATCCATTGTGCGA
CCAATCAAGTGTTTGCCTTAAACTTTGTTATTTTTCTTATATTTGCATAC
AATATTCTTCTTATAGGCAATGCTGGATTTCTTCGTATATCCAGTTCAAA
GGTAATGTCTTTGTAAATCAAAATGGAAAA
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