CX288827

Overview
NameCX288827
Unique NameCX288827
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length564
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13686 contig Ccv1_Contig13686:390..953. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288827 vs. ExPASy Swiss-Prot
Match: PME40_ARATH (Probable pectinesterase/pectinesterase inhibitor 40 OS=Arabidopsis thaliana GN=PME40 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.273e-31
Identity = 85/202 (42.08%), Postives = 121/202 (59.90%), Query Frame = 1
Query:    4 ELISVTINRTLSELRASSSNCSSIGQSY-PNFNTLEKRAINDCLELFHDTIVELKSALNDLSPKKLPSKHYHDLQTLFSGAMTNQYTCLDGFAYSDGN------------VRDVIKSSLYNISRHVSNSLVMLKKIPGDNMSSKYEVFPEYGRIKR--GFPTWLSLNDRKLLQKSVNLTKFDLIVAKDGSGNFTTITEAVEA 564
            EL+   +N+T+S +  SSSN S + Q    N +  +  A +DCLEL  DT+ +L +A++ L   +  S   H+++ L S AMTN  TCLDGFA SD +            V + +K SL+NIS HVS+SL ML+ IPG          P  G++K   GFP W+S +DR LLQ  V+ TK +L+VA++G+GN+TTI EA+ A
Sbjct:   39 ELVVTALNQTISNVNLSSSNFSDLLQRLGSNLSHRDLCAFDDCLELLDDTVFDLTTAISKL---RSHSPELHNVKMLLSAAMTNTRTCLDGFASSDNDENLNNNDNKTYGVAESLKESLFNISSHVSDSLAMLENIPGH--------IP--GKVKEDVGFPMWVSGSDRNLLQDPVDETKVNLVVAQNGTGNYTTIGEAISA 227          
BLAST of CX288827 vs. ExPASy Swiss-Prot
Match: PME39_ARATH (Probable pectinesterase/pectinesterase inhibitor 39 OS=Arabidopsis thaliana GN=PME39 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.484e-27
Identity = 77/197 (39.09%), Postives = 116/197 (58.88%), Query Frame = 1
Query:    1 PELISVTINRTLSELRASSSNCSSIG-QSYPNFNTLEKRAINDCLELFHDTIVELKSALNDLSPKKLPSKHYHDLQTLFSGAMTNQYTCLDGFAYSDG-NVRDV-------IKSSLYNISRHVSNSLVMLKKIPGDNMSSKYEVFPEYGRIKRGFPTWLSLNDRKLLQKSVNLTKFDLIVAKDGSGNFTTITEAVEA 564
            PELI   +N T+ ++  +SSN S +  + +PN    E+ A  DCL L  DTI +L++A++DL    L    ++D+  L +  MT Q TCLDGF+ SD  N  D+       +K  + +IS ++SNSL ML+ I      S+ +  P+   +   +P+WLS ND++LL+  V  T ++L VA DG+GNFTTI +AV A
Sbjct:   54 PELIIADLNLTILKVNLASSNFSDLQTRLFPNLTHYERCAFEDCLGLLDDTISDLETAVSDLRSSSL---EFNDISMLLTNVMTYQDTCLDGFSTSDNENNNDMTYELPENLKEIILDISNNLSNSLHMLQVI------SRKKPSPKSSEVDVEYPSWLSENDQRLLEAPVQETNYNLSVAIDGTGNFTTINDAVFA 241          
BLAST of CX288827 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.179e-25
Identity = 70/168 (41.67%), Postives = 100/168 (59.52%), Query Frame = 1
Query:   91 NFNTLEKRAINDCLELFHDTIVELKSALNDLSP---KKLPSKHYHDLQTLFSGAMTNQYTCLDGFAYSDGN--VRDVIKSSLYNISRHVSNSLVMLKKIPGDNM-----SSKYEVFPEYGRIKRGFPTWLSLNDRKLLQKSVNLTKFDLIVAKDGSGNFTTITEAVEA 564
            N    EK A++DCLE   +T+ EL  A+ DL     KK  S+H  DL+TL S AMTNQ TCLDGF++ D N  VRD +     ++ +  SN+L M+K +   +M     S+  ++  E   +  G+P WLS  DR+LLQ S ++T  +++VA DGSGNF T+  +V A
Sbjct:  129 NLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMMIMRTSNNRKLIEETSTVD-GWPAWLSTGDRRLLQSS-SVTP-NVVVAADGSGNFKTVAASVAA 293          
BLAST of CX288827 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.764e-25
Identity = 71/167 (42.51%), Postives = 96/167 (57.49%), Query Frame = 1
Query:   91 NFNTLEKRAINDCLELFHDTIVELKSALNDLSP---KKLPSKHYHDLQTLFSGAMTNQYTCLDGFAYSDGN--VRDVIKSSLYNISRHVSNSLVMLKKIPGDNM----SSKYEVFPEYGRIKRGFPTWLSLNDRKLLQKSVNLTKFDLIVAKDGSGNFTTITEAVEA 564
            N    EK A++DCLE   +T+ EL  A+ DL     KK  S+H  DL+TL S AMTNQ TCLDGF++ D N  VRD +     ++ +  SN+L M+K +   +M    +S      E      G+P WLS  DR+LLQ S ++T  + +VA DGSGNF T+  AV A
Sbjct:  129 NLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMMIMRTSNNRKLTEETSTVDGWPAWLSPGDRRLLQSS-SVTP-NAVVAADGSGNFKTVAAAVAA 293          
BLAST of CX288827 vs. ExPASy Swiss-Prot
Match: PMEU1_SOLLC (Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.142e-22
Identity = 65/195 (33.33%), Postives = 110/195 (56.41%), Query Frame = 1
Query:    4 ELISVTINRTLSELRASSSNCSSIGQSYPNFNTLEKRAINDCLELFHDTIVELKSALNDLS---PKKLPSKHYHDLQTLFSGAMTNQYTCLDGFAY--SDGNVRDVIKSSLYNISRHVSNSLVMLKKIPGDNMSSKYEVFPEYGRIK-----RGFPTWLSLNDRKLLQKSVNLTKFDLIVAKDGSGNFTTITEAV 558
            ++I +++N T+  +R +      + ++       EK A++DCLE   +T+ EL +A+ DL     KK   +H  DL+TL S A+TNQ TCLDGF++  +D  VR V+     ++ +  SN+L M+  +   +++++ ++       K       +P WLS  DR+LLQ S      D++VA DGSG++ T++EAV
Sbjct:   98 DVIELSLNITVKAVRRNYYAVKELIKTRKGLTPREKVALHDCLETMDETLDELHTAVEDLELYPNKKSLKEHVEDLKTLISSAITNQETCLDGFSHDEADKKVRKVLLKGQKHVEKMCSNALAMICNMTDTDIANEMKLSAPANNRKLVEDNGEWPEWLSAGDRRLLQSST--VTPDVVVAADGSGDYKTVSEAV 290          
BLAST of CX288827 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.194e-21
Identity = 74/207 (35.75%), Postives = 101/207 (48.79%), Query Frame = 1
Query:    4 ELISVTINRTLSELRASSSNCSSIGQSYPNFNTLEKRAINDCLELFHDTIVELKSALNDLS--PK-KLPSKHYHDLQTLFSGAMTNQYTCLDGFAYSDGN--VRDVIKSSLYNISRHVSNSLVMLKK-----IPGDNMSSKYEVFPEYGRIK----------RGFPTWLSLNDRKLLQKSVNLTKFDLIVAKDGSGNFTTITEAVEA 564
            E+I  ++N T   ++ +      +          E  A++DCLE   +T+ EL  A+ DL   PK K   KH  DL+TL S A+TNQ TCLDGF+Y D +  VR  +     ++    SN+L M+K      I    +  K   F      K           G+P WLS+ DR+LLQ S    K D  VA DGSG+FTT+  AV A
Sbjct:   92 EVIEASLNLTTKAVKHNYFAVKKLIAKRKGLTPREVTALHDCLETIDETLDELHVAVEDLHQYPKQKSLRKHADDLKTLISSAITNQGTCLDGFSYDDADRKVRKALLKGQVHVEHMCSNALAMIKNMTETDIANFELRDKSSTFTNNNNRKLKEVTGDLDSDGWPKWLSVGDRRLLQGST--IKADATVADDGSGDFTTVAAAVAA 296          
BLAST of CX288827 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 2.660e-21
Identity = 69/215 (32.09%), Postives = 103/215 (47.91%), Query Frame = 1
Query:    4 ELISVTINRTLSELRASSSNCSSIGQSYPNFNTLEKRAINDCLELFHDTIVELKSALNDLS---PKKLPSKHYHDLQTLFSGAMTNQYTCLDGFAYSDGN--VRDVIKSSLYNISRHVSNSLVMLKKIPGD---NMSSKYEVFPEYGRIK--------------------RGFPTWLSLNDRKLLQKSVNLTKFDLIVAKDGSGNFTTITEAVEA 564
            ++I  ++N T++ +  +      + +        EK A++DCLE   +T+ EL   + DL     KK   +H  DL+TL S A+TNQ TCLDGF++ D +  VR  +     ++    SN+L M+K +      N   K ++     ++K                     G+PTWLS  DR+LLQ S    K D  VA DGSG F T+  AV A
Sbjct:   89 DVIEASVNLTITAVEHNYFTVKKLIKKRKGLTPREKTALHDCLETIDETLDELHETVEDLHLYPTKKTLREHAGDLKTLISSAITNQETCLDGFSHDDADKQVRKALLKGQIHVEHMCSNALAMIKNMTDTDIANFEQKAKITSNNRKLKEENQETTVAVDIAGAGELDSEGWPTWLSAGDRRLLQGSG--VKADATVAADGSGTFKTVAAAVAA 301          
BLAST of CX288827 vs. ExPASy Swiss-Prot
Match: PME34_ARATH (Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.510e-16
Identity = 63/195 (32.31%), Postives = 99/195 (50.77%), Query Frame = 1
Query:    4 ELISVTINRTLSELRASSSNCSSIGQSYPNFNTLEKRAINDCLELFHDTIVELKSALNDLSPKKLPSKHYHDLQTLFSGAMTNQYTCLDGF-AYSDGNVRDVIKSSLYNISRHVSNSLVMLKKI-PGDNMSSKYEVFPEYGRIKRG-------FPTWLSLNDRKLLQKSVNLTKFDLIVAKDGSGNFTTITEAVE 561
            +LI VT+N TL     S +  SS   S+ +     + A + C+EL  D++  L  AL+ +      S    D+ T  S A+TN  TC +GF    DG V+D + ++L N+S  VSN L +      GD+ +      P   R   G       FP W+   +R++L+  V+  + D+IV+KDG+G   TI+EA++
Sbjct:  118 DLIHVTVNMTLHHF--SHALYSSASLSFVDMPPRARSAYDSCVELLDDSVDALSRALSSVVSS---SAKPQDVTTWLSAALTNHDTCTEGFDGVDDGGVKDHMTAALQNLSELVSNCLAIFSASHDGDDFAG----VPIQNRRLLGVEEREEKFPRWMRPKEREILEMPVSQIQADIIVSKDGNGTCKTISEAIK 303          
BLAST of CX288827 vs. ExPASy Swiss-Prot
Match: PME6_ARATH (Probable pectinesterase/pectinesterase inhibitor 6 OS=Arabidopsis thaliana GN=PME6 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.365e-16
Identity = 61/179 (34.08%), Postives = 88/179 (49.16%), Query Frame = 1
Query:  115 AINDCLELFHDTIVELKSALNDLSPKKLPSKHYHDLQTLFSGAMTNQYTCLDGFAYSDGNVRDVIKSSLY----------NISRHVSNSLVMLKKIP-GDNMSSKYEV--FPEYGRIKRG----------------FPTWLSLNDRKLLQKSVNLTKFDLIVAKDGSGNFTTITEAVEA 564
            A+ DCLEL+ DTI +L  +         P    HD QT  S A+ NQ TC +GF       RD   +S Y          N+++ +SNSL + K     + ++ KY    F ++ + +                  FP+W  L+DRKLL+ S    K DL+VAKDGSG++T+I +AV A
Sbjct:  103 ALFDCLELYEDTIDQLNHSRRSYGQYSSP----HDRQTSLSAAIANQDTCRNGF-------RDFKLTSSYSKYFPVQFHRNLTKSISNSLAVTKAAAEAEAVAEKYPSTGFTKFSKQRSSAGGGSHRRLLLFSDEKFPSWFPLSDRKLLEDSKTTAKADLVVAKDGSGHYTSIQQAVNA 270          
BLAST of CX288827 vs. ExPASy Swiss-Prot
Match: PME13_ARATH (Probable pectinesterase/pectinesterase inhibitor 13 OS=Arabidopsis thaliana GN=PME13 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.395e-16
Identity = 57/159 (35.85%), Postives = 91/159 (57.23%), Query Frame = 1
Query:   97 NTLEKRAINDCLELFHDTIVELKSALNDLSPKKLPS--KHYHDLQTLFSGAMTNQYTCLDGFAYSDGNVRDVIKSSLYNISRHVSNSLVMLKKIPGDNMSSKYEVFPEYGRIKRGFPTWLSLNDRKLLQK-SVNLTKFDLIVAKDGSGNFTTITEAVEA 564
            N  +K AI  C  L  D   E  ++LN ++  ++ S  K   DL++  S  M+ Q TCLDGF   +GN++  +K+S+ +     SNSL ++K    +N+S   +V   +  +  G P+W+S +DR++L+   V   K +  VAKDGSG+FTTI +A+ A
Sbjct:  168 NQDDKDAIEQCKLLVEDAKEETVASLNKINVTEVNSFEKVVPDLESWLSAVMSYQETCLDGF--EEGNLKSEVKTSVNSSQVLTSNSLALIKTFT-ENLSPVMKVVERH--LLDGIPSWVSNDDRRMLRAVDVKALKPNATVAKDGSGDFTTINDALRA 321          
The following BLAST results are available for this feature:
BLAST of CX288827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
PME40_ARATH1.273e-3142.08Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME39_ARATH2.484e-2739.09Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME3_CITSI5.179e-2541.67Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME1_CITSI6.764e-2542.51Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PMEU1_SOLLC3.142e-2233.33Pectinesterase/pectinesterase inhibitor U1 OS=Sola... [more]
PME2_ARATH1.194e-2135.75Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
PME3_ARATH2.660e-2132.09Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PME34_ARATH1.510e-1632.31Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME6_ARATH3.365e-1634.08Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME13_ARATH4.395e-1635.85Probable pectinesterase/pectinesterase inhibitor 1... [more]

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Properties
Property NameValue
Genbank descriptionC02004H01SK IF1 Citrus clementina cDNA clone C02004H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288827 ID=CX288827; Name=CX288827; organism=Citrus clementina; type=EST; length=564bp
CCTGAACTCATCTCCGTAACCATAAACCGCACATTGTCCGAGCTGAGAGC
CTCCTCCTCAAACTGCTCCAGCATTGGACAGAGTTACCCAAATTTTAACA
CCCTTGAAAAGAGAGCAATCAATGACTGTCTCGAGCTGTTTCATGACACC
ATTGTTGAGCTCAAATCAGCTCTCAATGATCTCTCCCCCAAGAAATTGCC
CTCCAAGCATTACCATGATTTGCAAACTTTGTTCAGCGGTGCAATGACAA
ACCAGTACACGTGTCTTGATGGGTTCGCTTACAGTGACGGAAACGTGAGG
GACGTTATTAAGAGCAGCTTGTACAACATTTCCAGGCACGTGAGCAACTC
TTTGGTTATGCTCAAGAAAATCCCCGGTGATAACATGTCTTCCAAGTACG
AGGTTTTTCCTGAGTATGGGCGTATTAAGAGAGGATTCCCAACTTGGTTG
TCTTTAAATGATCGCAAATTGTTACAGAAGTCCGTTAATTTGACCAAATT
TGATCTGATAGTGGCTAAAGATGGCTCTGGGAATTTCACTACCATTACTG
AAGCAGTGGAAGCA
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