CX288864

Overview
NameCX288864
Unique NameCX288864
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NDUS2_NICSY (NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 8.047e-24
Identity = 54/57 (94.74%), Postives = 54/57 (94.74%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGVFLVSNGSNRPYRRKIRAP  AH QGLDSMSKHHMPADVVTIIGTQDIVSGEVDR
Sbjct:  338 FGVFLVSNGSNRPYRRKIRAPCFAHSQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 394          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NDUS2_ARATH (NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Arabidopsis thaliana GN=NAD7 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 4.416e-22
Identity = 52/57 (91.23%), Postives = 52/57 (91.23%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGVFLVSNGSNRPYR KIRAPG AHLQGLD MSKHHM ADVVTIIGTQDIV GEVDR
Sbjct:  338 FGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR 394          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NDUS2_NEPOL (NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Nephroselmis olivacea GN=NAD7 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.133e-20
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+LVSNG+NRPYR KIRAPG  HLQGLD MSK+HM ADVVTIIGTQDIV GEVDR
Sbjct:  342 FGVYLVSNGTNRPYRCKIRAPGFLHLQGLDMMSKNHMLADVVTIIGTQDIVFGEVDR 398          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NDUS2_PROWI (NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Prototheca wickerhamii GN=NAD7 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.968e-19
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+LVSNG+++PYR KIRAPG AHLQGLD M+++HM ADVVTIIGTQDIV GEVDR
Sbjct:  344 FGVYLVSNGTSKPYRCKIRAPGFAHLQGLDFMARNHMLADVVTIIGTQDIVFGEVDR 400          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_NEIMF (NADH-quinone oxidoreductase subunit D OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=nuoD PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.868e-18
Identity = 42/57 (73.68%), Postives = 50/57 (87.72%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+++S+G+N+PYR KIRAPG AHLQG+D M+K HM ADVV IIGTQDIV GEVDR
Sbjct:  362 FGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_NEIMB (NADH-quinone oxidoreductase subunit D OS=Neisseria meningitidis serogroup B GN=nuoD PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.868e-18
Identity = 42/57 (73.68%), Postives = 50/57 (87.72%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+++S+G+N+PYR KIRAPG AHLQG+D M+K HM ADVV IIGTQDIV GEVDR
Sbjct:  362 FGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_NEIMA (NADH-quinone oxidoreductase subunit D OS=Neisseria meningitidis serogroup A GN=nuoD PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.868e-18
Identity = 42/57 (73.68%), Postives = 50/57 (87.72%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+++S+G+N+PYR KIRAPG AHLQG+D M+K HM ADVV IIGTQDIV GEVDR
Sbjct:  362 FGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_NEIM0 (NADH-quinone oxidoreductase subunit D OS=Neisseria meningitidis serogroup C (strain 053442) GN=nuoD PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.868e-18
Identity = 42/57 (73.68%), Postives = 50/57 (87.72%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+++S+G+N+PYR KIRAPG AHLQG+D M+K HM ADVV IIGTQDIV GEVDR
Sbjct:  362 FGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_NEIG2 (NADH-quinone oxidoreductase subunit D OS=Neisseria gonorrhoeae (strain NCCP11945) GN=nuoD PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.868e-18
Identity = 42/57 (73.68%), Postives = 50/57 (87.72%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+++S+G+N+PYR KIRAPG AHLQG+D M+K HM ADVV IIGTQDIV GEVDR
Sbjct:  362 FGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418          
BLAST of CX288864 vs. ExPASy Swiss-Prot
Match: NUOD_NEIG1 (NADH-quinone oxidoreductase subunit D OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=nuoD PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.868e-18
Identity = 42/57 (73.68%), Postives = 50/57 (87.72%), Query Frame = -2
Query:  349 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 519
            FGV+++S+G+N+PYR KIRAPG AHLQG+D M+K HM ADVV IIGTQDIV GEVDR
Sbjct:  362 FGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418          
The following BLAST results are available for this feature:
BLAST of CX288864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
NDUS2_NICSY8.047e-2494.74NADH-ubiquinone oxidoreductase 49 kDa subunit OS=N... [more]
NDUS2_ARATH4.416e-2291.23NADH-ubiquinone oxidoreductase 49 kDa subunit OS=A... [more]
NDUS2_NEPOL4.133e-2084.21NADH-ubiquinone oxidoreductase 49 kDa subunit OS=N... [more]
NDUS2_PROWI5.968e-1978.95NADH-ubiquinone oxidoreductase 49 kDa subunit OS=P... [more]
NUOD_NEIMF3.868e-1873.68NADH-quinone oxidoreductase subunit D OS=Neisseria... [more]
NUOD_NEIMB3.868e-1873.68NADH-quinone oxidoreductase subunit D OS=Neisseria... [more]
NUOD_NEIMA3.868e-1873.68NADH-quinone oxidoreductase subunit D OS=Neisseria... [more]
NUOD_NEIM03.868e-1873.68NADH-quinone oxidoreductase subunit D OS=Neisseria... [more]
NUOD_NEIG23.868e-1873.68NADH-quinone oxidoreductase subunit D OS=Neisseria... [more]
NUOD_NEIG13.868e-1873.68NADH-quinone oxidoreductase subunit D OS=Neisseria... [more]

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Properties
Property NameValue
Genbank descriptionC02006C08SK IF1 Citrus clementina cDNA clone C02006C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288864 ID=CX288864; Name=CX288864; organism=Citrus clementina; type=EST; length=520bp
CCTCCTGCTGCTTGCCTCTATCTCTACTTCTGGGTCTCGATCTCGAACTC
AAACTGATGCCTAGCTGCCTGAATCTCTGCTTCCTTCTACTACCAGCGGG
CTAGCCTTAGTTATGATTTGCATATCGATCCCTTGGTTGGAGGACGGATC
TCGCTACATACTAAAAGGATGTTAATCACCGCATTGGAACTACCTACCAT
GAACCTTCTACCCCGAAATCCCACCACTTAGAGTCCATAGGAGGTTGCGG
GATGGGAACTATCGGGGCAACACCCTACCAAGGGGAATCCATCAAAGTTT
TTGGCTCGCAATAAAGCTAGGGTCCTGATCGAGCAACTAGTAGTCCTATC
TATCCACCTCTCCAGACACAATATCTTGAGTACCTATGATGGTGACCACA
TCTGCTGGCATGTGATGTTTAGACATAGAATCGAGTCCTTGTAAATGGGC
AGAGCCAGGTGCTCTTATTTTACGACGGTAGGGACGATTGCTTCCATTAC
TGACCAGAAAGACACCAAAT
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