CX288866

Overview
NameCX288866
Unique NameCX288866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length504
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288866 vs. ExPASy Swiss-Prot
Match: AMPD_ARATH (AMP deaminase OS=Arabidopsis thaliana GN=AMPD PE=1 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 4.410e-48
Identity = 87/114 (76.32%), Postives = 99/114 (86.84%), Query Frame = 1
Query:   34 YHMRGLNVSLSSDDPLQIHLTKEALVEEYSVAAKVWKLSSCDLCEIARNSVYQSGFSHMAKSHWLGNKYFIRGPGGNDIHKTNVPNIRIEFRHETWKEEMQYVYLGRAIIPVEI 375
            + +RGLNVSLS+DDPLQIHLTKE LVEEYS+AA VWKLS+CDLCEIARNSVYQSGFSH  KSHW+G  Y+ RGP GNDIHKTNVP+IR+EFR   WKEEMQ VYLG+A+I  E+
Sbjct:  724 FFLRGLNVSLSTDDPLQIHLTKEPLVEEYSIAASVWKLSACDLCEIARNSVYQSGFSHALKSHWIGKDYYKRGPDGNDIHKTNVPHIRVEFRDTIWKEEMQQVYLGKAVISDEV 837          
BLAST of CX288866 vs. ExPASy Swiss-Prot
Match: AMPD_ORYSJ (Probable AMP deaminase OS=Oryza sativa subsp. japonica GN=AMPD PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 6.369e-47
Identity = 86/116 (74.14%), Postives = 98/116 (84.48%), Query Frame = 1
Query:   31 TYHMRGLNVSLSSDDPLQIHLTKEALVEEYSVAAKVWKLSSCDLCEIARNSVYQSGFSHMAKSHWLGNKYFIRGPGGNDIHKTNVPNIRIEFRHETWKEEMQYVYLGRAIIPVEID 378
            T+ +RGLNVSLS+DDPLQIHLTKE LVEEYS+AA +WKLSSCDLCEIARNSVYQSGFSH  KSHW+G  Y+ RG  GNDIH+TNVP+IRIEFRH  WKEEM+ ++L    IP EID
Sbjct:  699 TFFLRGLNVSLSTDDPLQIHLTKEPLVEEYSIAASLWKLSSCDLCEIARNSVYQSGFSHRLKSHWIGRNYYKRGHDGNDIHQTNVPHIRIEFRHTIWKEEMELIHLRNVDIPEEID 814          
BLAST of CX288866 vs. ExPASy Swiss-Prot
Match: AMPD2_RAT (AMP deaminase 2 OS=Rattus norvegicus GN=Ampd2 PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 3.625e-34
Identity = 66/103 (64.08%), Postives = 80/103 (77.67%), Query Frame = 1
Query:   34 YHMRGLNVSLSSDDPLQIHLTKEALVEEYSVAAKVWKLSSCDLCEIARNSVYQSGFSHMAKSHWLGNKYFIRGPGGNDIHKTNVPNIRIEFRHETWKEEMQYV 342
            Y  RGL VSLS+DDPLQ H TKE L+EEYS+A +VWKLSSCD+CE+ARNSV  SGFSH  KSHWLG  Y   GP GNDI +TNVP+IR+ +R+ET  +E+  +
Sbjct:  698 YLSRGLMVSLSTDDPLQFHFTKEPLMEEYSIATQVWKLSSCDMCELARNSVLMSGFSHKVKSHWLGPNYTKEGPEGNDIRRTNVPDIRVGYRYETLCQELALI 800          
BLAST of CX288866 vs. ExPASy Swiss-Prot
Match: AMPD2_MOUSE (AMP deaminase 2 OS=Mus musculus GN=Ampd2 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.625e-34
Identity = 66/103 (64.08%), Postives = 80/103 (77.67%), Query Frame = 1
Query:   34 YHMRGLNVSLSSDDPLQIHLTKEALVEEYSVAAKVWKLSSCDLCEIARNSVYQSGFSHMAKSHWLGNKYFIRGPGGNDIHKTNVPNIRIEFRHETWKEEMQYV 342
            Y  RGL VSLS+DDPLQ H TKE L+EEYS+A +VWKLSSCD+CE+ARNSV  SGFSH  KSHWLG  Y   GP GNDI +TNVP+IR+ +R+ET  +E+  +
Sbjct:  672 YLSRGLMVSLSTDDPLQFHFTKEPLMEEYSIATQVWKLSSCDMCELARNSVLMSGFSHKVKSHWLGPNYTKEGPEGNDIRRTNVPDIRVGYRYETLCQELALI 774          
BLAST of CX288866 vs. ExPASy Swiss-Prot
Match: AMPD2_HUMAN (AMP deaminase 2 OS=Homo sapiens GN=AMPD2 PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 3.625e-34
Identity = 66/103 (64.08%), Postives = 80/103 (77.67%), Query Frame = 1
Query:   34 YHMRGLNVSLSSDDPLQIHLTKEALVEEYSVAAKVWKLSSCDLCEIARNSVYQSGFSHMAKSHWLGNKYFIRGPGGNDIHKTNVPNIRIEFRHETWKEEMQYV 342
            Y  RGL VSLS+DDPLQ H TKE L+EEYS+A +VWKLSSCD+CE+ARNSV  SGFSH  KSHWLG  Y   GP GNDI +TNVP+IR+ +R+ET  +E+  +
Sbjct:  752 YLSRGLMVSLSTDDPLQFHFTKEPLMEEYSIATQVWKLSSCDMCELARNSVLMSGFSHKVKSHWLGPNYTKEGPEGNDIRRTNVPDIRVGYRYETLCQELALI 854          
BLAST of CX288866 vs. ExPASy Swiss-Prot
Match: AMPD3_RAT (AMP deaminase 3 OS=Rattus norvegicus GN=Ampd3 PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 5.787e-32
Identity = 63/100 (63.00%), Postives = 79/100 (79.00%), Query Frame = 1
Query:   43 RGLNVSLSSDDPLQIHLTKEALVEEYSVAAKVWKLSSCDLCEIARNSVYQSGFSHMAKSHWLGNKYFIRGPGGNDIHKTNVPNIRIEFRHETWKEEMQYV 342
            +GL+VSLS+DDP+Q H TKEAL+EEY++AA+VWKLS+CDLCEIARNSV QSG SH  K  +LG  Y+  GP GNDI KTNV  IR+ FR+ET   E+ ++
Sbjct:  652 KGLHVSLSTDDPMQFHYTKEALMEEYAIAAQVWKLSTCDLCEIARNSVLQSGLSHQEKQKFLGQNYYKEGPEGNDIRKTNVAQIRMAFRYETLCNELSFL 751          
BLAST of CX288866 vs. ExPASy Swiss-Prot
Match: AMPD3_MOUSE (AMP deaminase 3 OS=Mus musculus GN=Ampd3 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 5.787e-32
Identity = 63/100 (63.00%), Postives = 79/100 (79.00%), Query Frame = 1
Query:   43 RGLNVSLSSDDPLQIHLTKEALVEEYSVAAKVWKLSSCDLCEIARNSVYQSGFSHMAKSHWLGNKYFIRGPGGNDIHKTNVPNIRIEFRHETWKEEMQYV 342
            +GL+VSLS+DDP+Q H TKEAL+EEY++AA+VWKLS+CDLCEIARNSV QSG SH  K  +LG  Y+  GP GNDI KTNV  IR+ FR+ET   E+ ++
Sbjct:  653 KGLHVSLSTDDPMQFHYTKEALMEEYAIAAQVWKLSTCDLCEIARNSVLQSGLSHQEKQKFLGQNYYKEGPEGNDIRKTNVAQIRMAFRYETLCNELSFL 752          
BLAST of CX288866 vs. ExPASy Swiss-Prot
Match: AMPD3_HUMAN (AMP deaminase 3 OS=Homo sapiens GN=AMPD3 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 5.787e-32
Identity = 63/100 (63.00%), Postives = 79/100 (79.00%), Query Frame = 1
Query:   43 RGLNVSLSSDDPLQIHLTKEALVEEYSVAAKVWKLSSCDLCEIARNSVYQSGFSHMAKSHWLGNKYFIRGPGGNDIHKTNVPNIRIEFRHETWKEEMQYV 342
            +GL+VSLS+DDP+Q H TKEAL+EEY++AA+VWKLS+CDLCEIARNSV QSG SH  K  +LG  Y+  GP GNDI KTNV  IR+ FR+ET   E+ ++
Sbjct:  654 KGLHVSLSTDDPMQFHYTKEALMEEYAIAAQVWKLSTCDLCEIARNSVLQSGLSHQEKQKFLGQNYYKEGPEGNDIRKTNVAQIRMAFRYETLCNELSFL 753          
BLAST of CX288866 vs. ExPASy Swiss-Prot
Match: AMPD_DICDI (AMP deaminase OS=Dictyostelium discoideum GN=amdA PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 9.871e-32
Identity = 65/111 (58.56%), Postives = 80/111 (72.07%), Query Frame = 1
Query:   34 YHMRGLNVSLSSDDPLQIHLTKEALVEEYSVAAKVWKLSSCDLCEIARNSVYQSGFSHMAKSHWLGNKYFIRGPGGNDIHKTNVPNIRIEFRHETWKEEMQYVYLGRAIIP 366
            +  RGLNVS+S+DDPLQ H TKE L+EEYS+A +VW+LS CD+CEIARNSV QSGF H  KSHWLG  Y     GGNDI KTN+ +IR+ FR+ET  EE+  +      +P
Sbjct:  553 FFARGLNVSISTDDPLQFHYTKEPLMEEYSIATQVWRLSVCDICEIARNSVLQSGFEHNVKSHWLGPDY--ANSGGNDIKKTNISDIRVCFRNETLIEELHLILKSLQTLP 661          
BLAST of CX288866 vs. ExPASy Swiss-Prot
Match: AMPD1_RAT (AMP deaminase 1 OS=Rattus norvegicus GN=Ampd1 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.207e-29
Identity = 58/108 (53.70%), Postives = 80/108 (74.07%), Query Frame = 1
Query:   28 ITYHMRGLNVSLSSDDPLQIHLTKEALVEEYSVAAKVWKLSSCDLCEIARNSVYQSGFSHMAKSHWLGNKYFIRGPGGNDIHKTNVPNIRIEFRHETWKEEMQYVYLG 351
            + +  +GL +SLS+DDP+Q H TKE L+EEY++AA+V+KLS+CD+CE+ARNSV Q G SH  K+ +LGN Y   GP GNDI +TNV  IR+ +R+ETW  E+  +  G
Sbjct:  635 LDFLQKGLMISLSTDDPMQFHFTKEPLMEEYAIAAQVFKLSTCDMCEVARNSVLQCGISHEEKAKFLGNNYLEEGPVGNDIRRTNVAQIRMAYRYETWCYELNLIAEG 742          
The following BLAST results are available for this feature:
BLAST of CX288866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
AMPD_ARATH4.410e-4876.32AMP deaminase OS=Arabidopsis thaliana GN=AMPD PE=1... [more]
AMPD_ORYSJ6.369e-4774.14Probable AMP deaminase OS=Oryza sativa subsp. japo... [more]
AMPD2_RAT3.625e-3464.08AMP deaminase 2 OS=Rattus norvegicus GN=Ampd2 PE=2... [more]
AMPD2_MOUSE3.625e-3464.08AMP deaminase 2 OS=Mus musculus GN=Ampd2 PE=1 SV=1[more]
AMPD2_HUMAN3.625e-3464.08AMP deaminase 2 OS=Homo sapiens GN=AMPD2 PE=1 SV=2[more]
AMPD3_RAT5.787e-3263.00AMP deaminase 3 OS=Rattus norvegicus GN=Ampd3 PE=2... [more]
AMPD3_MOUSE5.787e-3263.00AMP deaminase 3 OS=Mus musculus GN=Ampd3 PE=2 SV=1[more]
AMPD3_HUMAN5.787e-3263.00AMP deaminase 3 OS=Homo sapiens GN=AMPD3 PE=1 SV=1[more]
AMPD_DICDI9.871e-3258.56AMP deaminase OS=Dictyostelium discoideum GN=amdA ... [more]
AMPD1_RAT1.207e-2953.70AMP deaminase 1 OS=Rattus norvegicus GN=Ampd1 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionC02006C10SK IF1 Citrus clementina cDNA clone C02006C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288866 ID=CX288866; Name=CX288866; organism=Citrus clementina; type=EST; length=504bp
ATTTGGCTGCTGCATTCCTTTTATGTAATAACATATCACATGCGCGGCCT
GAATGTTTCACTCTCGTCTGATGATCCTTTGCAAATCCACTTAACAAAAG
AAGCACTTGTGGAAGAGTATAGTGTTGCGGCAAAGGTGTGGAAGCTCAGT
TCTTGTGACCTATGTGAGATAGCAAGAAATTCTGTTTATCAATCAGGATT
TTCGCATATGGCAAAGTCACACTGGCTTGGTAATAAATACTTCATCAGAG
GCCCAGGAGGAAATGATATTCATAAGACGAATGTACCGAATATAAGAATT
GAGTTTCGACATGAGACATGGAAGGAAGAGATGCAGTATGTCTACTTGGG
AAGGGCCATTATTCCTGTAGAAATAGACACCTGATGGAATTGAAATGGGA
GAATAAAGCATTTTTGAGCTTAGCGGGGACTTACTCCTACTGAATGGTCA
GATCTACTAATAACCCTCAATAATTTAGTAACTTCAATCAGTGGGTAGAG
CTCA
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