CX288880

Overview
NameCX288880
Unique NameCX288880
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length612
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX288880_ssr106 microsatellite CX288880_ssr106:106..123. BLAST: Citrus ESTs to Prunus persica proteins V1
CX288880_ssr348 microsatellite CX288880_ssr348:348..359. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: AUX28_SOYBN (Auxin-induced protein AUX28 OS=Glycine max GN=AUX28 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.387e-45
Identity = 99/167 (59.28%), Postives = 106/167 (63.47%), Query Frame = 1
Query:   13 RAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI*LTQPLFN*FPPIIHTTQKCFFKEVI*WVLFI*FVMYVGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 513
            + QVVGWPPVRSFRKN++AVQK   E   K       N +FVKVSMDGAPYLRKVDLK+YKSY+ELSD+LGKMFSSFT                                           GNC SQGMKDFMNESKL DLLN SDYVPTYEDKDGDWMLVGDVPWE
Sbjct:   88 KTQVVGWPPVRSFRKNMLAVQKSVGEESEK---NSSPNASFVKVSMDGAPYLRKVDLKMYKSYRELSDSLGKMFSSFTF------------------------------------------GNCESQGMKDFMNESKLNDLLNSSDYVPTYEDKDGDWMLVGDVPWE 209          
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA16_ARATH (Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.090e-45
Identity = 101/179 (56.42%), Postives = 112/179 (62.57%), Query Frame = 1
Query:   13 RAQVVGWPPVRSFRKNIMAVQK----DNEEGDNK--------AXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI*LTQPLFN*FPPIIHTTQKCFFKEVI*WVLFI*FVMYVGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 513
            +AQVVGWPPVRSFRKN+M+ QK    D  EG++K        +       VA+VKVSMDGAPYLRK+DLKLYK+YQ+LS+AL KMFSSFTIG Y                                          G QGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE
Sbjct:   68 KAQVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSSGATSSASACATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNY------------------------------------------GPQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 204          
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA14_ARATH (Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 5.454e-42
Identity = 91/166 (54.82%), Postives = 106/166 (63.86%), Query Frame = 1
Query:   13 RAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI*LTQPLFN*FPPIIHTTQKCFFKEVI*WVLFI*FVMYVGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPW 510
            +AQVVGWPPVR++RKN+MA QK  E    +A       VAFVKVSMDGAPYLRKVDLK+Y SY++LSDAL KMFSSFT+G+Y                                          G+QGM DFMNESK++DLLN S+YVP+YEDKDGDWMLVGDVPW
Sbjct:   74 KAQVVGWPPVRNYRKNVMANQKSGEA--EEAMSSGGGTVAFVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSY------------------------------------------GAQGMIDFMNESKVMDLLNSSEYVPSYEDKDGDWMLVGDVPW 195          
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA30_ORYSJ (Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica GN=IAA30 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.617e-41
Identity = 95/171 (55.56%), Postives = 103/171 (60.23%), Query Frame = 1
Query:   13 RAQVVGWPPVRSFRKNIMAVQ----KDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI*LTQPLFN*FPPIIHTTQKCFFKEVI*WVLFI*FVMYVGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 513
            +AQVVGWPPVRS+RKNI+AVQ    KD  +G            AFVKVSMDGAPYLRKVDLK+YKSY ELS AL KMFSSFTI                                          GNCGS G+   MNESK+ DLLNGS+YVPTYEDKDGDWMLVGDVPWE
Sbjct:  118 KAQVVGWPPVRSYRKNILAVQADKGKDAADGGGDKSGAGAAAAAFVKVSMDGAPYLRKVDLKMYKSYLELSKALEKMFSSFTI------------------------------------------GNCGSHGVNG-MNESKIADLLNGSEYVPTYEDKDGDWMLVGDVPWE 245          
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA7_ARATH (Auxin-responsive protein IAA7 OS=Arabidopsis thaliana GN=IAA7 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.909e-40
Identity = 91/173 (52.60%), Postives = 106/173 (61.27%), Query Frame = 1
Query:   13 RAQVVGWPPVRSFRKNIMAVQKDN---EEGDNKAXXXXXXNVA---FVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI*LTQPLFN*FPPIIHTTQKCFFKEVI*WVLFI*FVMYVGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 513
            +AQVVGWPPVR++RKN+M  QK +   EE  ++         A    VKVSMDGAPYLRKVDLK+YKSYQ+LSDAL KMFSSFT+G Y                                          G+QGM DFMNESKL++LLN S+YVP+YEDKDGDWMLVGDVPWE
Sbjct:   80 KAQVVGWPPVRNYRKNMMTQQKTSSGAEEASSEKAGNFGGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNY------------------------------------------GAQGMIDFMNESKLMNLLNSSEYVPSYEDKDGDWMLVGDVPWE 210          
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA17_ARATH (Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.177e-36
Identity = 83/166 (50.00%), Postives = 98/166 (59.04%), Query Frame = 1
Query:   13 RAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI*LTQPLFN*FPPIIHTTQKCFFKEVI*WVLFI*FVMYVGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPW 510
            +AQVVGWPPVRS+RKN+M   + +  G   A        AFVKVSMDGAPYLRK+DL++YKSY ELS+AL  MFSSFT+G +                                          G +GM DFMNE KL+DL+N  DYVP+YEDKDGDWMLVGDVPW
Sbjct:   80 KAQVVGWPPVRSYRKNVMVSCQKSSGGPEAA--------AFVKVSMDGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMGKH-----------------------------------------GGEEGMIDFMNERKLMDLVNSWDYVPSYEDKDGDWMLVGDVPW 196          
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA27_ARATH (Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.140e-34
Identity = 83/173 (47.98%), Postives = 97/173 (56.07%), Query Frame = 1
Query:   13 RAQVVGWPPVRSFRKNIMAVQKDNEEGDN------KAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI*LTQPLFN*FPPIIHTTQKCFFKEVI*WVLFI*FVMYVGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 513
            +AQVVGWPP+RSFRKN MA  +  + G+N      +A         +VKVSM+GAPYLRK+DLK YKSY ELS AL KMFS FTIG +                                       G CG    +D +NES+L DLL GS+YV TYEDKD DWMLVGDVPWE
Sbjct:  141 KAQVVGWPPIRSFRKNSMASSQSQKPGNNSETEEAEAKSGPEQPCLYVKVSMEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTIGQF------------------------------------GSHGGCG----RDGLNESRLTDLLRGSEYVVTYEDKDSDWMLVGDVPWE 273          
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA9_ARATH (Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.325e-34
Identity = 82/170 (48.24%), Postives = 98/170 (57.65%), Query Frame = 1
Query:   13 RAQVVGWPPVRSFRKNIMAVQ-KDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI*LTQPLFN*FPPIIHTTQKCFFKEVI*WVLFI*FVMYVGNCGSQGM--KDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 513
            +AQ+VGWPPVRS+RKN +A   K+++E D +          FVKVSMDGAPYLRKVDL+ Y +Y ELS AL KMF++FT+                                          G CGS G   KD ++E+KL DLLNG DYV TYEDKDGDWMLVGDVPWE
Sbjct:  181 KAQIVGWPPVRSYRKNTLATTCKNSDEVDGRPGS----GALFVKVSMDGAPYLRKVDLRSYTNYGELSSALEKMFTTFTL------------------------------------------GQCGSNGAAGKDMLSETKLKDLLNGKDYVLTYEDKDGDWMLVGDVPWE 304          
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA8_ARATH (Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.713e-33
Identity = 85/169 (50.30%), Postives = 101/169 (59.76%), Query Frame = 1
Query:   13 RAQVVGWPPVRSFRKNIMA--VQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI*LTQPLFN*FPPIIHTTQKCFFKEVI*WVLFI*FVMYVGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 513
            +AQVVGWPP+RS+RKN MA    K+ +E D K        V FVKVSMDGAPYLRKVDL+ Y SYQ+LS AL KMFS FT+G                     +C                  G  G+QG ++ M+E KL DLL+GS++V TYEDKDGDWMLVGDVPWE
Sbjct:  163 KAQVVGWPPIRSYRKNTMASSTSKNTDEVDGKPGL----GVLFVKVSMDGAPYLRKVDLRTYTSYQQLSSALEKMFSCFTLG---------------------QC------------------GLHGAQG-RERMSEIKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWE 287          
BLAST of CX288880 vs. ExPASy Swiss-Prot
Match: IAA21_ORYSJ (Auxin-responsive protein IAA21 OS=Oryza sativa subsp. japonica GN=IAA21 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.646e-30
Identity = 74/168 (44.05%), Postives = 95/168 (56.55%), Query Frame = 1
Query:   13 RAQVVGWPPVRSFRKNIMAVQKDNEEG--DNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI*LTQPLFN*FPPIIHTTQKCFFKEVI*WVLFI*FVMYVGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPW 510
            +AQVVGWPP+RS+RKN MA+ +   +G  D +A         +VKVSMDGAPYLRKVDLK+YK+Y+ELS AL KMFS FT+G                                         G    +  +D +++ +L+DL NG++ V TYEDKD DWMLVGDVPW
Sbjct:  106 KAQVVGWPPIRSYRKNTMAMSQPALKGKDDGEAKQAPASGCLYVKVSMDGAPYLRKVDLKMYKNYKELSLALEKMFSCFTVGH----------------------------------------GESNGKSGRDGLSDCRLMDLKNGTELVLTYEDKDEDWMLVGDVPW 233          
The following BLAST results are available for this feature:
BLAST of CX288880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
AUX28_SOYBN1.387e-4559.28Auxin-induced protein AUX28 OS=Glycine max GN=AUX2... [more]
IAA16_ARATH3.090e-4556.42Auxin-responsive protein IAA16 OS=Arabidopsis thal... [more]
IAA14_ARATH5.454e-4254.82Auxin-responsive protein IAA14 OS=Arabidopsis thal... [more]
IAA30_ORYSJ4.617e-4155.56Auxin-responsive protein IAA30 OS=Oryza sativa sub... [more]
IAA7_ARATH3.909e-4052.60Auxin-responsive protein IAA7 OS=Arabidopsis thali... [more]
IAA17_ARATH1.177e-3650.00Auxin-responsive protein IAA17 OS=Arabidopsis thal... [more]
IAA27_ARATH7.140e-3447.98Auxin-responsive protein IAA27 OS=Arabidopsis thal... [more]
IAA9_ARATH9.325e-3448.24Auxin-responsive protein IAA9 OS=Arabidopsis thali... [more]
IAA8_ARATH2.713e-3350.30Auxin-responsive protein IAA8 OS=Arabidopsis thali... [more]
IAA21_ORYSJ1.646e-3044.05Auxin-responsive protein IAA21 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionC02006E01SK IF1 Citrus clementina cDNA clone C02006E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288880 ID=CX288880; Name=CX288880; organism=Citrus clementina; type=EST; length=612bp
TTTTTTTTTTGCAGGGCACAAGTTGTGGGTTGGCCACCCGTTAGATCATT
CAGAAAGAACATCATGGCCGTCCAAAAGGACAATGAAGAAGGTGATAATA
AGGCTAGCAGCAGCAGCAGCAGCAATGTAGCTTTTGTTAAAGTGAGCATG
GATGGTGCCCCATACTTGCGCAAGGTTGATTTGAAGCTATACAAAAGCTA
CCAAGAACTCTCTGATGCCCTTGGCAAAATGTTCAGCTCTTTCACCATTG
GTACCTACATATAACTAACACAACCACTTTTTAATTAATTTCCTCCCATA
ATTCACACTACTCAAAAGTGCTTTTTTAAAGAAGTGATATAGTGGGTTTT
ATTTATTTAATTTGTTATGTATGTAGGTAACTGTGGGTCACAAGGGATGA
AGGATTTTATGAATGAGAGCAAACTGATTGATCTTTTGAATGGCTCAGAT
TATGTACCTACTTATGAAGACAAAGATGGAGATTGGATGCTTGTTGGTGA
TGTACCATGGGAGTAAGTTCATTCATTTCTATTGCGTTACATTAGAGTCA
GTACAACCAACCAATAGAATCATGACATGTATATAAAAACAGTCACGATG
TCATGTGTTGAT
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