CX288894

Overview
NameCX288894
Unique NameCX288894
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length413
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6604 contig Ccv1_Contig6604:575..987. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288894 vs. ExPASy Swiss-Prot
Match: PDRP1_MAIZE (Pyruvate, phosphate dikinase regulatory protein, chloroplastic OS=Zea mays GN=PDRP1 PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 6.478e-55
Identity = 101/136 (74.26%), Postives = 120/136 (88.24%), Query Frame = 3
Query:    3 LMVILKQAAKEGAMLVYTLADPSMAESAKKACELWGILSTDVLGPITEAIASHIGVSPSGLPRGAPGRNFPLGEEYFRRIEAIEFTIKQDDGALPQNLHKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGV 410
            L+ ++KQAAKEGA+++YTLADPSMAE+ KKAC+ WG+  TDVL P  EAIASHIGV+PSG+PR  P RN  L E+YF+RI+AI+FTIKQDDG LPQN ++ADI+L+GVSRTGKTPLSIYLAQKGYKVANVPIVMGV
Sbjct:  187 LIEVIKQAAKEGALVLYTLADPSMAEATKKACDFWGVPCTDVLRPTVEAIASHIGVAPSGIPRSFPSRNGRLSEDYFQRIDAIDFTIKQDDGVLPQNFYRADIVLAGVSRTGKTPLSIYLAQKGYKVANVPIVMGV 322          
BLAST of CX288894 vs. ExPASy Swiss-Prot
Match: PDRP1_ORYSJ (Probable pyruvate, phosphate dikinase regulatory protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PDRP1 PE=2 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 8.460e-55
Identity = 104/136 (76.47%), Postives = 120/136 (88.24%), Query Frame = 3
Query:    3 LMVILKQAAKEGAMLVYTLADPSMAESAKKACELWGILSTDVLGPITEAIASHIGVSPSGLPRGAPGRNFPLGEEYFRRIEAIEFTIKQDDGALPQNLHKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGV 410
            L+ I+KQAAKEGA+++YTLADPSMAE+ KKACELWG+ S D+L P  EAIASHIGV+PSG+PR +P R   L E+YFRRIEAI+FTIKQDDGA PQNL++A I+L GVSRTGKTPLSIYLAQKGYKVANVPIVMGV
Sbjct:  205 LIEIVKQAAKEGALVLYTLADPSMAEATKKACELWGVPSNDILRPTIEAIASHIGVAPSGIPRSSPSRKGQLTEDYFRRIEAIDFTIKQDDGAQPQNLNRAHIVLVGVSRTGKTPLSIYLAQKGYKVANVPIVMGV 340          
BLAST of CX288894 vs. ExPASy Swiss-Prot
Match: PDRP1_ORYSI (Probable pyruvate, phosphate dikinase regulatory protein, chloroplastic OS=Oryza sativa subsp. indica GN=PDRP1 PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 8.460e-55
Identity = 104/136 (76.47%), Postives = 120/136 (88.24%), Query Frame = 3
Query:    3 LMVILKQAAKEGAMLVYTLADPSMAESAKKACELWGILSTDVLGPITEAIASHIGVSPSGLPRGAPGRNFPLGEEYFRRIEAIEFTIKQDDGALPQNLHKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGV 410
            L+ I+KQAAKEGA+++YTLADPSMAE+ KKACELWG+ S D+L P  EAIASHIGV+PSG+PR +P R   L E+YFRRIEAI+FTIKQDDGA PQNL++A I+L GVSRTGKTPLSIYLAQKGYKVANVPIVMGV
Sbjct:  205 LIEIVKQAAKEGALVLYTLADPSMAEATKKACELWGVPSNDILRPTIEAIASHIGVAPSGIPRSSPSRKGQLTEDYFRRIEAIDFTIKQDDGAQPQNLNRAHIVLVGVSRTGKTPLSIYLAQKGYKVANVPIVMGV 340          
BLAST of CX288894 vs. ExPASy Swiss-Prot
Match: PDRP2_ARATH (Pyruvate, phosphate dikinase regulatory protein 2 OS=Arabidopsis thaliana GN=RP2 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 7.162e-54
Identity = 104/137 (75.91%), Postives = 118/137 (86.13%), Query Frame = 3
Query:    3 LMVILKQAAKEGAMLVYTLADPSMAESAKKACELWGILSTDVLGPITEAIASHIGVSPSGLPRGAPGRNFPLGEEYFRRIEAIEFTIKQDDGALPQNLHKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVE 413
            L+ I+KQAAKEGAM  YTLA+PSMA+SAK+AC+  G+LS D+LGPI E IASH+GVSPSGL RGAPGR   L + YF+RIEAIEFTIKQDDG LP+NL KADI+L GVSRTGKTPLS Y+AQKGYKVANVP VMGVE
Sbjct:  136 LIEIIKQAAKEGAMCFYTLANPSMAKSAKQACDQLGVLSVDILGPIIEGIASHLGVSPSGLTRGAPGRVKTLNDAYFKRIEAIEFTIKQDDGTLPENLSKADIVLVGVSRTGKTPLSTYIAQKGYKVANVPFVMGVE 272          
BLAST of CX288894 vs. ExPASy Swiss-Prot
Match: PDRP1_ARATH (Pyruvate, phosphate dikinase regulatory protein 1, chloroplastic OS=Arabidopsis thaliana GN=RP1 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 4.345e-51
Identity = 99/137 (72.26%), Postives = 117/137 (85.40%), Query Frame = 3
Query:    3 LMVILKQAAKEGAMLVYTLADPSMAESAKKACELWGILSTDVLGPITEAIASHIGVSPSGLPRGAPGRNFPLGEEYFRRIEAIEFTIKQDDGALPQNLHKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVE 413
            LM I+KQAA+EGAM++YTLADPSMAE+  +AC+LW I S D+LGPITE+I+SH+G +PSGL RG    N  L E+YF+RIEAIEFTIK DDGALP+NL KADI+L GVSRTGKTPLS YLAQKGYKV+NVPIV GV+
Sbjct:  165 LMEIIKQAAREGAMVIYTLADPSMAEATMRACKLWKIPSLDILGPITESISSHLGTNPSGLSRGIT--NSSLNEDYFKRIEAIEFTIKHDDGALPENLEKADIVLVGVSRTGKTPLSTYLAQKGYKVSNVPIVNGVD 299          
BLAST of CX288894 vs. ExPASy Swiss-Prot
Match: Y410_GEOSF (Putative phosphotransferase Geob_0410 OS=Geobacter sp. (strain FRC-32) GN=Geob_0410 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.006e-31
Identity = 66/137 (48.18%), Postives = 95/137 (69.34%), Query Frame = 3
Query:    3 LMVILKQAAKEGAMLVYTLADPSMAESAKKACELWGILSTDVLGPITEAIASHIGVSPSGLPRGAPGRNFPLGEEYFRRIEAIEFTIKQDDGALPQNLHKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVE 413
            + + L +AAK+  ++ YTL D  +A+       L  + + D++ P+   +AS +G+ P    +  PG  + L  EY++R+EA++FT+KQDDG  P+NLHKADI+L GVSRT KTPLS+YLA KGYKVANVP+VMG+E
Sbjct:   45 ISISLDEAAKQPGVIFYTLVDNELAQYLYNEANLRQLEAIDLITPLLYRLASLLGIQP----QKEPGLLYQLNSEYYKRMEAVDFTVKQDDGQEPRNLHKADIVLVGVSRTSKTPLSMYLAHKGYKVANVPLVMGIE 177          
BLAST of CX288894 vs. ExPASy Swiss-Prot
Match: Y4292_GEOUR (Putative phosphotransferase Gura_4292 OS=Geobacter uraniireducens (strain Rf4) GN=Gura_4292 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.479e-30
Identity = 65/137 (47.45%), Postives = 95/137 (69.34%), Query Frame = 3
Query:    3 LMVILKQAAKEGAMLVYTLADPSMAESAKKACELWGILSTDVLGPITEAIASHIGVSPSGLPRGAPGRNFPLGEEYFRRIEAIEFTIKQDDGALPQNLHKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVE 413
            + + L +AAK+  ++ YTL D  +A+       L  + + D++ P+   +AS +G+ P    +  PG  + L  EY++R+EA++FT+KQDDG  P+NL+KADI+L GVSRT KTPLS+YLA KGYKVANVPIV+G+E
Sbjct:   45 ISLALDEAAKQPGVIFYTLVDNVLAQYLHNEANLRELEAIDLITPLLFKLASLLGIPP----QKEPGLLYQLNTEYYKRMEAVDFTVKQDDGQEPRNLYKADIVLVGVSRTSKTPLSMYLAHKGYKVANVPIVLGIE 177          
BLAST of CX288894 vs. ExPASy Swiss-Prot
Match: Y242_GEOBB (Putative phosphotransferase Gbem_0242 OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=Gbem_0242 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.750e-28
Identity = 58/133 (43.61%), Postives = 88/133 (66.17%), Query Frame = 3
Query:   15 LKQAAKEGAMLVYTLADPSMAESAKKACELWGILSTDVLGPITEAIASHIGVSPSGLPRGAPGRNFPLGEEYFRRIEAIEFTIKQDDGALPQNLHKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVE 413
            L +  +   ++ YTL +  +A+  +   E   + + D++ P+   +A  + + P  LP    G  + +  EY+RR+EA++FT+KQDDG  P+NLHKADI+L GVSR+ KTPLS+YLA KGYKVANVPI+ G++
Sbjct:   49 LDEVDRAPGIIFYTLVNTELAQFVRNEVEARQLEAVDLITPLLYKLAEFLEMRPQKLP----GLQYEMNSEYYRRMEAVDFTVKQDDGQEPRNLHKADIVLIGVSRSSKTPLSMYLAHKGYKVANVPIIQGID 177          
BLAST of CX288894 vs. ExPASy Swiss-Prot
Match: Y226_GEOSM (Putative phosphotransferase GM21_0226 OS=Geobacter sp. (strain M21) GN=GM21_0226 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.750e-28
Identity = 58/133 (43.61%), Postives = 88/133 (66.17%), Query Frame = 3
Query:   15 LKQAAKEGAMLVYTLADPSMAESAKKACELWGILSTDVLGPITEAIASHIGVSPSGLPRGAPGRNFPLGEEYFRRIEAIEFTIKQDDGALPQNLHKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVE 413
            L +  +   ++ YTL +  +A+  +   E   + + D++ P+   +A  + + P  LP    G  + +  EY+RR+EA++FT+KQDDG  P+NLHKADI+L GVSR+ KTPLS+YLA KGYKVANVPI+ G++
Sbjct:   49 LDEVDRAPGIIFYTLVNTELAQFVRNEVEARQLEAVDLITPLLYKLAEFLEMRPQKLP----GLQYEMNSEYYRRMEAVDFTVKQDDGQEPRNLHKADIVLIGVSRSSKTPLSMYLAHKGYKVANVPIIQGID 177          
BLAST of CX288894 vs. ExPASy Swiss-Prot
Match: Y2438_PELCD (Putative phosphotransferase Pcar_2438 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=Pcar_2438 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.816e-28
Identity = 61/133 (45.86%), Postives = 87/133 (65.41%), Query Frame = 3
Query:   15 LKQAAKEGAMLVYTLADPSMAESAKKACELWGILSTDVLGPITEAIASHIGVSPSGLPRGAPGRNFPLGEEYFRRIEAIEFTIKQDDGALPQNLHKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVE 413
            L++A K   M+VYT+ +  +A+  K  CE+ G+++ D++ P+    +   G +P       PG    + EEYFRRIEA+EFT+K DDG    +L  ADI+L GVSRT KTPLS YLA  G+KVANVP+V+G++
Sbjct:   52 LQEAIKNQGMVVYTVVNRELAQYIKDECEVRGLMAFDLVTPLLSQFSQFFGRTPGQ----TPGLLHDMDEEYFRRIEAVEFTVKHDDGQEVSHLRHADIVLVGVSRTSKTPLSTYLAHHGWKVANVPLVLGID 180          
The following BLAST results are available for this feature:
BLAST of CX288894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
PDRP1_MAIZE6.478e-5574.26Pyruvate, phosphate dikinase regulatory protein, c... [more]
PDRP1_ORYSJ8.460e-5576.47Probable pyruvate, phosphate dikinase regulatory p... [more]
PDRP1_ORYSI8.460e-5576.47Probable pyruvate, phosphate dikinase regulatory p... [more]
PDRP2_ARATH7.162e-5475.91Pyruvate, phosphate dikinase regulatory protein 2 ... [more]
PDRP1_ARATH4.345e-5172.26Pyruvate, phosphate dikinase regulatory protein 1,... [more]
Y410_GEOSF1.006e-3148.18Putative phosphotransferase Geob_0410 OS=Geobacter... [more]
Y4292_GEOUR2.479e-3047.45Putative phosphotransferase Gura_4292 OS=Geobacter... [more]
Y242_GEOBB6.750e-2843.61Putative phosphotransferase Gbem_0242 OS=Geobacter... [more]
Y226_GEOSM6.750e-2843.61Putative phosphotransferase GM21_0226 OS=Geobacter... [more]
Y2438_PELCD8.816e-2845.86Putative phosphotransferase Pcar_2438 OS=Pelobacte... [more]

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Properties
Property NameValue
Genbank descriptionC02006F04SK IF1 Citrus clementina cDNA clone C02006F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288894 ID=CX288894; Name=CX288894; organism=Citrus clementina; type=EST; length=413bp
AGTTGATGGTGATACTAAAGCAAGCGGCCAAGGAAGGGGCAATGCTTGTT
TACACCTTAGCCGATCCTTCCATGGCAGAGTCTGCTAAAAAGGCCTGCGA
GCTTTGGGGTATTCTGTCCACTGACGTATTGGGACCAATTACGGAGGCAA
TTGCATCCCATATAGGCGTCTCACCTTCTGGCCTTCCCCGAGGTGCTCCG
GGCCGAAATTTTCCTCTTGGTGAGGAGTACTTTCGTCGCATAGAGGCTAT
TGAATTTACCATTAAGCAAGATGATGGTGCCCTTCCACAAAATTTGCACA
AAGCCGACATTATTCTATCAGGTGTTTCTCGTACTGGAAAAACACCGTTA
TCCATCTATTTAGCTCAGAAGGGATACAAAGTGGCAAATGTCCCAATTGT
GATGGGTGTAGAA
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