CX288902

Overview
NameCX288902
Unique NameCX288902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length489
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288902 vs. ExPASy Swiss-Prot
Match: DGDG2_SOYBN (Digalactosyldiacylglycerol synthase 2, chloroplastic OS=Glycine max GN=DGD2 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 1.718e-59
Identity = 110/162 (67.90%), Postives = 135/162 (83.33%), Query Frame = 3
Query:    3 DQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAEEPAQPTDAQTHQLSWESATERFLQVAELVGDVVTKRSKSPSRHLESESLNSKRIIEDAFGYLHYVASGFE 488
            D++Q+AA+KL+L VRV+P RDHAD +FHDYK+FLNPSTTDVVCT TAEALAMGKIVVCANHPSNDFFKQFPNC TYD  +GFV+ TLKALAE+PAQPTDAQ H LSWE+AT+RFL+ A+L   +  K S++ S  L + SLN +  +++A  Y+H+VASGFE
Sbjct:  272 DEVQKAAEKLELAVRVHPARDHADALFHDYKLFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCWTYDDDDGFVKLTLKALAEQPAQPTDAQRHDLSWEAATKRFLKAADLDKPLERKLSRTTSNFL-AASLNLQEKVDEASAYVHHVASGFE 432          
BLAST of CX288902 vs. ExPASy Swiss-Prot
Match: DGDG2_LOTJA (Digalactosyldiacylglycerol synthase 2, chloroplastic OS=Lotus japonicus GN=DGD2 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 5.526e-58
Identity = 110/162 (67.90%), Postives = 132/162 (81.48%), Query Frame = 3
Query:    3 DQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAEEPAQPTDAQTHQLSWESATERFLQVAELVGDVVTKRSKSPSRHLESESLNSKRIIEDAFGYLHYVASGFE 488
            D++Q+AAKKL++ VRV+P RDHAD +FHDYK+FLNPSTTDVVCT TAEALAMGKIVVCANH SN+FFKQFPNC T+D   GFV+  LKALAEEPAQ TDAQ H LSWE+ATERFL+ AEL      K S+S S ++ S SLN ++ ++DA  Y+H+VASGFE
Sbjct:  272 DEVQKAAKKLEMAVRVHPARDHADALFHDYKLFLNPSTTDVVCTTTAEALAMGKIVVCANHCSNEFFKQFPNCWTFDESKGFVQLILKALAEEPAQLTDAQRHDLSWEAATERFLKAAELDKPFEKKLSRSTSIYM-STSLNLQQTVDDASAYVHHVASGFE 432          
BLAST of CX288902 vs. ExPASy Swiss-Prot
Match: DGDG2_ARATH (Digalactosyldiacylglycerol synthase 2, chloroplastic OS=Arabidopsis thaliana GN=DGD2 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 5.352e-53
Identity = 100/162 (61.73%), Postives = 124/162 (76.54%), Query Frame = 3
Query:    3 DQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAEEPAQPTDAQTHQLSWESATERFLQVAELVGDVVTKRSKSPSRHLESESLNSKRIIEDAFGYLHYVASGFE 488
            ++I+ AA+KL L V VYPGRDHAD +FH+YKVFLNPSTTDVVCT TAEALAMGKIVVCANH SN FFKQFPNCRTYD   GFV ATLKAL E+P+Q T+ Q H+LSWE+AT+RF++V++L        + S      S S++  + +ED   Y+H++ASGFE
Sbjct:  274 EEIKEAARKLDLTVNVYPGRDHADSLFHNYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHISNKFFKQFPNCRTYDDGQGFVRATLKALGEQPSQLTEQQRHELSWEAATQRFIKVSDLNRLSRADSNLSKRSVFASSSISVGKNLEDMSAYIHFLASGFE 435          
BLAST of CX288902 vs. ExPASy Swiss-Prot
Match: DGDG1_ARATH (Digalactosyldiacylglycerol synthase 1, chloroplastic OS=Arabidopsis thaliana GN=DGD1 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 5.377e-37
Identity = 75/160 (46.88%), Postives = 104/160 (65.00%), Query Frame = 3
Query:    6 QIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAEEPAQPTDAQTHQLSWESATERFLQVAELVGDVVTKRSKSPSRHLESESLNS-KRIIEDAFGYLHYVASG 482
            ++QRAAKK  L +    GRDHAD   H YKVF+NPS +DV+CTATAEALAMGK VVCA+HPSN+FF+ FPNC TY     FV    +A+ +EP   T  Q + LSWE+AT+RF++ ++L  D +    +   +  +S S+ S   +++    + HYV +G
Sbjct:  612 EVQRAAKKHDLNLNFLKGRDHADDALHKYKVFINPSISDVLCTATAEALAMGKFVVCADHPSNEFFRSFPNCLTYKTSEDFVSKVQEAMTKEPLPLTPEQMYNLSWEAATQRFMEYSDL--DKILNNGEGGRKMRKSRSVPSFNEVVDGGLAFSHYVLTG 769          
BLAST of CX288902 vs. ExPASy Swiss-Prot
Match: DGDG1_SOYBN (Digalactosyldiacylglycerol synthase 1, chloroplastic OS=Glycine max GN=DGD1 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.043e-36
Identity = 76/170 (44.71%), Postives = 105/170 (61.76%), Query Frame = 3
Query:    3 DQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAEEPAQPTDAQTHQLSWESATERFLQVAELVGDVVTKRSKSPSRHLESESL--------NSKRIIEDAFGYLHYVASGFE 488
            +++Q AA++L L +    GRDHAD   H YKVF+NPS +DV+CTATAEALAMGK VVCA+HPSN+FF+ FPNC TY     FV    +AL  EP   T  Q +QLSWE+AT+RF++ +EL G ++ K +      ++   L        N   +++    + HY  +G E
Sbjct:  578 NEVQSAARRLDLNLNFQKGRDHADDSLHRYKVFINPSISDVLCTATAEALAMGKFVVCADHPSNEFFRSFPNCLTYRTSEDFVTKVKEALENEPYPLTPEQRYQLSWEAATQRFMEYSELDG-ILNKENNGEKSRVDKGKLIAKSASMPNLTELVDGGLAFAHYCLTGNE 746          
BLAST of CX288902 vs. ExPASy Swiss-Prot
Match: DGDG1_LOTJA (Digalactosyldiacylglycerol synthase 1, chloroplastic OS=Lotus japonicus GN=DGD1 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.324e-35
Identity = 79/171 (46.20%), Postives = 108/171 (63.16%), Query Frame = 3
Query:    3 DQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAEEPAQPTDAQTHQLSWESATERFLQVAELVGDVVTKRSK---SPSRH-----LESESL-NSKRIIEDAFGYLHYVASGFE 488
            +++Q AA++  L +    GRDHAD   H YKVF+NPS +DV+CTATAEALAMGK VVCA+HPSN+FF+ FPNC TY     F     +ALA EP   T  Q +QLSWE+AT+RF++ +EL  D V  + K    PS++      +S S+ N   +++    + HY  +G E
Sbjct:  581 NEVQSAARRFDLNLNFQKGRDHADDSLHRYKVFINPSISDVLCTATAEALAMGKFVVCADHPSNEFFRSFPNCLTYKTPEDFAVKVKEALANEPYPLTPEQRYQLSWEAATQRFMEYSEL--DKVLNKEKDGAKPSKNNRKIMAKSASMPNLTELVDGGLAFAHYCLTGNE 749          
The following BLAST results are available for this feature:
BLAST of CX288902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
DGDG2_SOYBN1.718e-5967.90Digalactosyldiacylglycerol synthase 2, chloroplast... [more]
DGDG2_LOTJA5.526e-5867.90Digalactosyldiacylglycerol synthase 2, chloroplast... [more]
DGDG2_ARATH5.352e-5361.73Digalactosyldiacylglycerol synthase 2, chloroplast... [more]
DGDG1_ARATH5.377e-3746.88Digalactosyldiacylglycerol synthase 1, chloroplast... [more]
DGDG1_SOYBN2.043e-3644.71Digalactosyldiacylglycerol synthase 1, chloroplast... [more]
DGDG1_LOTJA1.324e-3546.20Digalactosyldiacylglycerol synthase 1, chloroplast... [more]
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Properties
Property NameValue
Genbank descriptionC02006F12SK IF1 Citrus clementina cDNA clone C02006F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288902 ID=CX288902; Name=CX288902; organism=Citrus clementina; type=EST; length=489bp
TCGATCAAATTCAAAGAGCAGCTAAAAAGTTAAAACTTGTAGTTAGAGTT
TACCCTGGACGTGATCATGCAGACCCCATATTCCATGATTACAAAGTGTT
CCTGAATCCAAGCACAACAGATGTTGTTTGCACAGCGACAGCTGAAGCAT
TGGCCATGGGCAAAATCGTTGTCTGTGCCAACCACCCCTCAAATGACTTC
TTCAAGCAATTCCCAAATTGCCGAACTTACGATGGCAGAAATGGGTTTGT
TGAAGCCACACTCAAAGCACTTGCTGAAGAGCCTGCTCAACCAACTGATG
CACAGACGCATCAACTGTCGTGGGAGTCTGCAACAGAAAGGTTTTTGCAA
GTTGCTGAGCTGGTCGGGGATGTTGTGACGAAACGGTCAAAAAGTCCTTC
TAGGCACTTGGAATCCGAGTCATTAAATTCGAAGAGAATCATTGAGGATG
CCTTCGGATATTTGCATTACGTTGCGTCTGGATTTGAAA
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