CX288905

Overview
NameCX288905
Unique NameCX288905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length598
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15445 contig Ccv1_Contig15445:993..1590. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288905 vs. ExPASy Swiss-Prot
Match: TCPB_MACFA (T-complex protein 1 subunit beta OS=Macaca fascicularis GN=CCT2 PE=2 SV=3)

HSP 1 Score: 259.61 bits (662), Expect = 1.471e-77
Identity = 121/169 (71.60%), Postives = 151/169 (89.35%), Query Frame = 3
Query:   90 KKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSR 596
            +KM+EKV++I+ HGINCF+NRQLIYN+PE+LF  AG++AIEHADF G+ERLALVTGGEIASTFD+PE VKLG CKLIEE+MIGEDKLIHFSGV +G+ACTIVLRGA+  +LDEAERSLHDALCVL+QTV DSR ++GGG  EM+MA  V +LA +TPGK++ A+E++++
Sbjct:  273 EKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFAGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLANRTPGKEAVAMESYAK 441          

HSP 2 Score: 51.2174 bits (121), Expect = 1.471e-77
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 2
Query:    2 MDTDKVKIYGARVRVDSMSKAAEIEGAEKQKNEGK 106
            MDTDK+KI+G+RVRVDS +K AEIE AEK+K + K
Sbjct:  244 MDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEK 278          
BLAST of CX288905 vs. ExPASy Swiss-Prot
Match: TCPB_HUMAN (T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4)

HSP 1 Score: 259.61 bits (662), Expect = 1.471e-77
Identity = 121/169 (71.60%), Postives = 151/169 (89.35%), Query Frame = 3
Query:   90 KKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSR 596
            +KM+EKV++I+ HGINCF+NRQLIYN+PE+LF  AG++AIEHADF G+ERLALVTGGEIASTFD+PE VKLG CKLIEE+MIGEDKLIHFSGV +G+ACTIVLRGA+  +LDEAERSLHDALCVL+QTV DSR ++GGG  EM+MA  V +LA +TPGK++ A+E++++
Sbjct:  273 EKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFAGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLANRTPGKEAVAMESYAK 441          

HSP 2 Score: 51.2174 bits (121), Expect = 1.471e-77
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 2
Query:    2 MDTDKVKIYGARVRVDSMSKAAEIEGAEKQKNEGK 106
            MDTDK+KI+G+RVRVDS +K AEIE AEK+K + K
Sbjct:  244 MDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEK 278          
BLAST of CX288905 vs. ExPASy Swiss-Prot
Match: TCPB_MOUSE (T-complex protein 1 subunit beta OS=Mus musculus GN=Cct2 PE=1 SV=4)

HSP 1 Score: 258.84 bits (660), Expect = 2.502e-77
Identity = 121/169 (71.60%), Postives = 150/169 (88.76%), Query Frame = 3
Query:   90 KKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSR 596
            +KM+EKV++I+ HGINCF+NRQLIYN+PE+LF  AG++AIEHADF G+ERLALVTGGEIASTFD+PE VKLG CKLIEE+MIGEDKLIHFSGV +G+ACTIVLRGA+  +LDEAERSLHDALCVL+QTV D R ++GGG  EM+MA  V +LA +TPGK++ A+E+F++
Sbjct:  273 EKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFAGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDPRTVYGGGCSEMLMAHAVTQLANRTPGKEAVAMESFAK 441          

HSP 2 Score: 51.2174 bits (121), Expect = 2.502e-77
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 2
Query:    2 MDTDKVKIYGARVRVDSMSKAAEIEGAEKQKNEGK 106
            MDTDK+KI+G+RVRVDS +K AEIE AEK+K + K
Sbjct:  244 MDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEK 278          
BLAST of CX288905 vs. ExPASy Swiss-Prot
Match: TCPB_BOVIN (T-complex protein 1 subunit beta OS=Bos taurus GN=CCT2 PE=2 SV=3)

HSP 1 Score: 258.84 bits (660), Expect = 2.502e-77
Identity = 121/169 (71.60%), Postives = 151/169 (89.35%), Query Frame = 3
Query:   90 KKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSR 596
            +KM+EKV++I+ HGINCF+NRQLIYN+PE+LF  AG++AIEHADF G+ERLALVTGGEIASTFD+PE VKLG CKLIEE+MIGEDKLIHFSGV +G+ACTIVLRGA+  +LDEAERSLHDALCVL+QTV DSR ++GGG  EM+MA  V +LA +TPGK++ A+E++++
Sbjct:  273 EKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFVGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLASRTPGKEAVAMESYAK 441          

HSP 2 Score: 51.2174 bits (121), Expect = 2.502e-77
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 2
Query:    2 MDTDKVKIYGARVRVDSMSKAAEIEGAEKQKNEGK 106
            MDTDK+KI+G+RVRVDS +K AEIE AEK+K + K
Sbjct:  244 MDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEK 278          
BLAST of CX288905 vs. ExPASy Swiss-Prot
Match: TCPB_RAT (T-complex protein 1 subunit beta OS=Rattus norvegicus GN=Cct2 PE=1 SV=3)

HSP 1 Score: 256.914 bits (655), Expect = 9.444e-77
Identity = 121/169 (71.60%), Postives = 149/169 (88.17%), Query Frame = 3
Query:   90 KKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSR 596
            +KM+EKV++I+ HGINCF+NRQLIYN+PE+LF  AG++AIEHADF G+ERLALVTGGEIASTFD+PE VKLG CKLIEE+MIGEDKLIHFSGV +G+ACTIVLRGA+  +LDEAERSLHDALCVL+QTV D R ++GGG  EM+MA  V  LA +TPGK++ A+E+F++
Sbjct:  273 EKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFAGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDPRTVYGGGCSEMLMAHAVTMLASRTPGKEAVAMESFAK 441          

HSP 2 Score: 51.2174 bits (121), Expect = 9.444e-77
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 2
Query:    2 MDTDKVKIYGARVRVDSMSKAAEIEGAEKQKNEGK 106
            MDTDK+KI+G+RVRVDS +K AEIE AEK+K + K
Sbjct:  244 MDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEK 278          
BLAST of CX288905 vs. ExPASy Swiss-Prot
Match: TCPB_DICDI (T-complex protein 1 subunit beta OS=Dictyostelium discoideum GN=cct2 PE=1 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 2.084e-70
Identity = 114/169 (67.46%), Postives = 143/169 (84.62%), Query Frame = 3
Query:   90 KKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSR 596
            +KM  K +KI+ HGINCFVNRQL+YN PE+ FA+ G+++IEHADFDGIERLALVTG EI STFD+PE VK+G CKLIEE+MIGEDK+I FSG+  G+ACTIVLRGA+ H+L+EAERS+HDALCVL+ TV ++R + G G  EM+M+K VDELA  TPGKK+ AIE+F++
Sbjct:  272 EKMLNKCKKIVDHGINCFVNRQLVYNLPEQYFAEHGVMSIEHADFDGIERLALVTGAEIVSTFDHPELVKIGTCKLIEEVMIGEDKVIRFSGIPSGEACTIVLRGATSHILEEAERSIHDALCVLAVTVAETRTVLGAGCSEMIMSKAVDELAAITPGKKAMAIESFAK 440          

HSP 2 Score: 44.2838 bits (103), Expect = 2.084e-70
Identity = 21/38 (55.26%), Postives = 29/38 (76.32%), Query Frame = 2
Query:    2 MDTDKVKIYGARVRVDSMSKAAEIEGAEKQKNEGKGAK 115
            MDTDK+KI+G +V VDSM++ A++E AEK+K   K  K
Sbjct:  243 MDTDKIKIFGGKVVVDSMTELAKMEDAEKEKMLNKCKK 280          
BLAST of CX288905 vs. ExPASy Swiss-Prot
Match: TCPB_SCHPO (Probable T-complex protein 1 subunit beta OS=Schizosaccharomyces pombe GN=cct2 PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 7.935e-67
Identity = 122/169 (72.19%), Postives = 148/169 (87.57%), Query Frame = 3
Query:   90 KKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSR 596
            +KM+ KV+KI +H INCF+NRQLIYN+PE+LFADAGI++IEHADFDGIERL+LVTGGEIASTFD+PE VKLGHCK IEEI+IGEDK+I FSGVE G+ACTIVLRGA+H +LDE+ER++HDAL VLSQTV +SRV  GGG  EM+MAK V+E A   PGKK+ A+ AF++
Sbjct:  269 EKMKAKVEKIKSHNINCFINRQLIYNWPEQLFADAGIMSIEHADFDGIERLSLVTGGEIASTFDHPELVKLGHCKKIEEIIIGEDKMIKFSGVEAGEACTIVLRGATHQLLDESERAIHDALAVLSQTVAESRVTLGGGCAEMLMAKAVEEAATHEPGKKAVAVSAFAK 437          
BLAST of CX288905 vs. ExPASy Swiss-Prot
Match: TCPB_CAEEL (T-complex protein 1 subunit beta OS=Caenorhabditis elegans GN=cct-2 PE=2 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 1.212e-64
Identity = 103/168 (61.31%), Postives = 136/168 (80.95%), Query Frame = 3
Query:   93 KMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSR 596
            KM+EKV KI+AH  N F+NRQLIYN+PE+LFADA ++AIEHADF+GIERLALV GGEI STFD+P++ + G C LIEEIMIGED+L+ FSGV++G+AC++VLRGA+  +LDE+ERSLHDALCVL   V +S+ + G G  E++M+  +   A+K  GK++ A+EAF R
Sbjct:  268 KMKEKVDKILAHNCNVFINRQLIYNYPEQLFADAKVMAIEHADFEGIERLALVLGGEIVSTFDSPQTAQFGSCDLIEEIMIGEDRLLRFSGVKLGEACSVVLRGATQQILDESERSLHDALCVLVTHVKESKTVAGAGASEILMSSAIAVEAQKVAGKEALAVEAFGR 435          

HSP 2 Score: 48.9062 bits (115), Expect = 1.212e-64
Identity = 22/35 (62.86%), Postives = 29/35 (82.86%), Query Frame = 2
Query:    2 MDTDKVKIYGARVRVDSMSKAAEIEGAEKQKNEGK 106
            MDTDKVK++G+RVRVD ++K AE+E AEK K + K
Sbjct:  238 MDTDKVKVFGSRVRVDGVAKVAELEAAEKLKMKEK 272          
BLAST of CX288905 vs. ExPASy Swiss-Prot
Match: TCPB_YEAST (T-complex protein 1 subunit beta OS=Saccharomyces cerevisiae GN=CCT2 PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 3.819e-63
Identity = 106/169 (62.72%), Postives = 130/169 (76.92%), Query Frame = 3
Query:   90 KKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFSR 596
            +KM+ K+ KI   GIN F+NRQLIY++PE+LF D GI +IEHADF+G+ERLALVTGGE+ STFD P   KLG C +IEEIM+GE   + FSG + G+ACTIVLRGA+   LDEAERSLHDAL VLSQT  ++R + GGG  EMVM+K VD  A+   GKKS A+EAF+R
Sbjct:  267 EKMKNKIAKISKFGINTFINRQLIYDYPEQLFTDLGINSIEHADFEGVERLALVTGGEVVSTFDEPSKCKLGECDVIEEIMLGEQPFLKFSGCKAGEACTIVLRGATDQTLDEAERSLHDALSVLSQTTKETRTVLGGGCAEMVMSKAVDTEAQNIDGKKSLAVEAFAR 435          

HSP 2 Score: 45.0542 bits (105), Expect = 3.819e-63
Identity = 20/38 (52.63%), Postives = 30/38 (78.95%), Query Frame = 2
Query:    2 MDTDKVKIYGARVRVDSMSKAAEIEGAEKQKNEGKGAK 115
            +DTDKVKI+G + +VDS +K A++E AE++K + K AK
Sbjct:  238 LDTDKVKIFGTKFKVDSTAKLAQLEKAEREKMKNKIAK 275          
BLAST of CX288905 vs. ExPASy Swiss-Prot
Match: TCPB_ENCCU (T-complex protein 1 subunit beta OS=Encephalitozoon cuniculi GN=CCT2 PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.345e-47
Identity = 88/167 (52.69%), Postives = 119/167 (71.26%), Query Frame = 3
Query:   93 KMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVMAKEVDELARKTPGKKSHAIEAFS 593
            K++ KV++I  +G+N FVNRQL+Y++P +L    GI AIEHADFDG+ERL  V GG+I STFDN +    G C+ I  + +G +++I FSGV  G A TIVL G+S  +LDEAERS+HDALCVL++   D RV++GGG  EM MA  +++ A + PG +S AI AFS
Sbjct:  252 KIKGKVERISQNGVNVFVNRQLVYDYPLQLLRMKGIQAIEHADFDGVERLNNVLGGKILSTFDNMDESCYGTCESIRNVHVGNERMIKFSGVRSG-ASTIVLCGSSKEMLDEAERSVHDALCVLAKIKEDPRVIYGGGSSEMAMAVGLNKYAMEVPGAESDAILAFS 417          

HSP 2 Score: 40.4318 bits (93), Expect = 1.345e-47
Identity = 17/35 (48.57%), Postives = 27/35 (77.14%), Query Frame = 2
Query:    2 MDTDKVKIYGARVRVDSMSKAAEIEGAEKQKNEGK 106
            MD DK+K++GA++ V+S+ +  E+E AEK K +GK
Sbjct:  222 MDQDKIKVFGAKINVNSVGELEEMEKAEKIKIKGK 256          
The following BLAST results are available for this feature:
BLAST of CX288905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
TCPB_MACFA1.471e-7771.60T-complex protein 1 subunit beta OS=Macaca fascicu... [more]
TCPB_HUMAN1.471e-7771.60T-complex protein 1 subunit beta OS=Homo sapiens G... [more]
TCPB_MOUSE2.502e-7771.60T-complex protein 1 subunit beta OS=Mus musculus G... [more]
TCPB_BOVIN2.502e-7771.60T-complex protein 1 subunit beta OS=Bos taurus GN=... [more]
TCPB_RAT9.444e-7771.60T-complex protein 1 subunit beta OS=Rattus norvegi... [more]
TCPB_DICDI2.084e-7067.46T-complex protein 1 subunit beta OS=Dictyostelium ... [more]
TCPB_SCHPO7.935e-6772.19Probable T-complex protein 1 subunit beta OS=Schiz... [more]
TCPB_CAEEL1.212e-6461.31T-complex protein 1 subunit beta OS=Caenorhabditis... [more]
TCPB_YEAST3.819e-6362.72T-complex protein 1 subunit beta OS=Saccharomyces ... [more]
TCPB_ENCCU1.345e-4752.69T-complex protein 1 subunit beta OS=Encephalitozoo... [more]

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Properties
Property NameValue
Genbank descriptionC02006G04SK IF1 Citrus clementina cDNA clone C02006G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288905 ID=CX288905; Name=CX288905; organism=Citrus clementina; type=EST; length=598bp
AATGGATACAGATAAAGTGAAGATTTATGGGGCACGTGTTCGTGTTGATT
CAATGTCAAAGGCCGCTGAGATAGAAGGTGCAGAGAAGCAAAAAAATGAG
GGAAAAGGTGCAAAAGATAATAGCTCATGGGATTAACTGCTTCGTTAATA
GGCAGTTGATTTACAATTTTCCAGAGGAACTCTTTGCAGATGCGGGTATA
CTTGCAATTGAGCATGCTGATTTTGATGGTATAGAGCGTCTGGCTTTAGT
AACTGGTGGTGAAATTGCATCAACCTTTGATAATCCAGAGTCAGTTAAGC
TTGGGCACTGCAAGCTTATTGAGGAAATTATGATTGGCGAGGACAAGTTG
ATCCACTTTTCTGGTGTTGAAATGGGTCAGGCTTGTACCATAGTGTTGAG
AGGTGCAAGCCATCATGTGCTTGACGAGGCTGAGCGGTCTCTGCATGATG
CCTTGTGTGTGCTGTCTCAGACAGTCAATGACAGCAGGGTTTTGTTTGGA
GGTGGATGGCCTGAGATGGTTATGGCCAAGGAAGTGGATGAGCTGGCACG
TAAGACTCCTGGGAAAAAGTCCCATGCCATTGAGGCTTTCTCACGGGC
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