CX288906

Overview
NameCX288906
Unique NameCX288906
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length563
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX288906_ssr518 microsatellite CX288906_ssr518:518..542. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14885 contig Ccv1_Contig14885:262..824. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288906 vs. ExPASy Swiss-Prot
Match: KAP1_ARATH (Adenylyl-sulfate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=AKN1 PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.018e-65
Identity = 119/163 (73.01%), Postives = 142/163 (87.12%), Query Frame = 2
Query:    2 KSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLCFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGFTGIDDPYEPPLNCEIEIKQKDGVCPTPNAMAGQVVSYLEEEGYL 490
            KSTLA ++N+ LY +GKL YILDGDN+RHGLN++L F AEDR ENIRRVGEVAKLFADAG+ICIASLISPYR DRDACR++LP+ +F+EVFM++PL +CEARDPKGLYKLARAGKIKGFTGIDDPYEPPLNCEI + ++ G   +P  MA +VV YL+ +GYL
Sbjct:  114 KSTLACALNQMLYQKGKLCYILDGDNVRHGLNRDLSFKAEDRAENIRRVGEVAKLFADAGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKGFTGIDDPYEPPLNCEISLGREGGT--SPIEMAEKVVGYLDNKGYL 274          
BLAST of CX288906 vs. ExPASy Swiss-Prot
Match: KAPS_CATRO (Adenylyl-sulfate kinase, chloroplastic OS=Catharanthus roseus GN=AKN PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 2.269e-65
Identity = 118/163 (72.39%), Postives = 143/163 (87.73%), Query Frame = 2
Query:    2 KSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLCFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGFTGIDDPYEPPLNCEIEIKQKDGVCPTPNAMAGQVVSYLEEEGYL 490
            KSTLA ++++ L+++GKL+YILDGDN+RHGLN +L F AEDR ENIRR+GEVAKLFADAG+ICIASLISPYRK  DACR++LP+ +FIEVFM++PL++CEARDPKGLYKLARAGKIKGFTGIDDPYEPPL  EI + QK G+C +P  +A  V+SYLEE GYL
Sbjct:  148 KSTLACALSRGLHAKGKLTYILDGDNVRHGLNSDLSFKAEDRAENIRRIGEVAKLFADAGVICIASLISPYRKPPDACRSLLPEGDFIEVFMDVPLKVCEARDPKGLYKLARAGKIKGFTGIDDPYEPPLKSEIVLHQKLGMCDSPCDLADIVISYLEENGYL 310          
BLAST of CX288906 vs. ExPASy Swiss-Prot
Match: KAP2_ARATH (Adenylyl-sulfate kinase 2, chloroplastic OS=Arabidopsis thaliana GN=AKN2 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 3.622e-63
Identity = 112/164 (68.29%), Postives = 140/164 (85.37%), Query Frame = 2
Query:    2 KSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLCFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGFTGIDDPYEPPLNCEIEIKQK-DGVCPTPNAMAGQVVSYLEEEGYL 490
            KST+A +++K L+ RGKL+Y LDGDN+RHGLN++L F AE RTENIRR+GEVAKLFAD G+ICIASLISPYR+DRDACR++LPD +F+EVFM++PL +CE+RDPKGLYKLARAGKIKGFTGIDDPYE P+NCE+ +K   D    +P  MA  ++SYL+ +GYL
Sbjct:  128 KSTVACALSKALFERGKLTYTLDGDNVRHGLNRDLTFKAEHRTENIRRIGEVAKLFADVGVICIASLISPYRRDRDACRSLLPDGDFVEVFMDVPLHVCESRDPKGLYKLARAGKIKGFTGIDDPYEAPVNCEVVLKHTGDDESCSPRQMAENIISYLQNKGYL 291          
BLAST of CX288906 vs. ExPASy Swiss-Prot
Match: CYSC_GEOSF (Adenylyl-sulfate kinase OS=Geobacter sp. (strain FRC-32) GN=cysC PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.690e-44
Identity = 86/164 (52.44%), Postives = 120/164 (73.17%), Query Frame = 2
Query:    2 KSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLCFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGFTGIDDPYEPPLNCEIEIKQKDGVCPTPNAMAGQVVSYLEEEGYLH 493
            KSTLA +V +EL+ +G  +YILDGDN+RHGLN +L FS  DR ENIRR+GEVAKLF DAG+I +A+ ISPYR+DR+  RA+   + FIEVF+N  L +CE+RDPKGLY+ AR+G++K FTGID PYE P + E+ +   +  C T  +    V++++ + G ++
Sbjct:   41 KSTLAHAVEEELFRKGCYTYILDGDNIRHGLNSDLGFSEADRRENIRRIGEVAKLFVDAGIIVLAAFISPYREDRERVRALFEPAEFIEVFVNCDLAVCESRDPKGLYRKARSGELKQFTGIDSPYEVPFSPELVV---NTACSTVKSGVQSVLAFVRDRGLIN 201          
BLAST of CX288906 vs. ExPASy Swiss-Prot
Match: CYSC_STAES (Adenylyl-sulfate kinase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=cysC PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.431e-43
Identity = 88/163 (53.99%), Postives = 115/163 (70.55%), Query Frame = 2
Query:    2 KSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLCFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGFTGIDDPYEPPLNCEIEIKQKDGVCPTPNAMAGQVVSYLEEEGYL 490
            KST++ ++ KEL++ GK +Y LDGDN+RHGLNKNL FS EDR+ENIRR+GEVAKL  DAG + + + ISPY++DR+  RA+L D+ FIEV+    +E CE RDPKGLYK AR+G+I  FTGI  PY+ P N EI I   D    T      Q++ YL+E  Y+
Sbjct:   40 KSTVSVALEKELFNEGKQTYRLDGDNVRHGLNKNLGFSPEDRSENIRRIGEVAKLMVDAGALTVTAFISPYKEDREGVRALLEDNEFIEVYTKCSVEECEKRDPKGLYKKARSGEIPEFTGISAPYQAPENPEITI---DTEHDTIEQSVEQIIRYLKEHEYI 199          
BLAST of CX288906 vs. ExPASy Swiss-Prot
Match: CYSC_STAEQ (Adenylyl-sulfate kinase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=cysC PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.869e-43
Identity = 88/163 (53.99%), Postives = 115/163 (70.55%), Query Frame = 2
Query:    2 KSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLCFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGFTGIDDPYEPPLNCEIEIKQKDGVCPTPNAMAGQVVSYLEEEGYL 490
            KST++ ++ KEL++ GK +Y LDGDN+RHGLNKNL FS EDR+ENIRR+GEVAKL  DAG + + + ISPY++DR+  RA+L D+ FIEV+    +E CE RDPKGLYK AR+G+I  FTGI  PY+ P N EI I   D    T      Q++ YL+E  Y+
Sbjct:   40 KSTVSVALEKELFNEGKQTYRLDGDNVRHGLNKNLGFSPEDRSENIRRIGEVAKLMVDAGALTVTAFISPYKEDREGVRALLEDNEFIEVYTKCSVEECEKRDPKGLYKKARSGEIPEFTGISAPYQAPENPEITI---DTEHDTIEQSVVQIIRYLKEHEYI 199          
BLAST of CX288906 vs. ExPASy Swiss-Prot
Match: CYSC_LACPL (Adenylyl-sulfate kinase OS=Lactobacillus plantarum GN=cysC PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 5.437e-43
Identity = 94/163 (57.67%), Postives = 113/163 (69.33%), Query Frame = 2
Query:    2 KSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLCFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGFTGIDDPYEPPLNCEIEIKQKDGVCPTPNAMAGQVVSYLEEEGYL 490
            KST+A +V K L+ +   SY+LDGDN+R GLNKNL FSAEDR ENIRR+GEVAKLF DAG+I + + ISPYR DRD  RA L    FIEVF++ PLE+CE RD K LY  AR G+I GFTGID PYE P++ EI I   D       A   QV++YL E  Y+
Sbjct:   40 KSTIANAVEKALFDQQVGSYVLDGDNMRFGLNKNLGFSAEDREENIRRIGEVAKLFVDAGVITLTAFISPYRADRDKVRANLEVDEFIEVFVDTPLEVCEQRDVKQLYAKARRGEITGFTGIDAPYEAPIDPEITI---DTSKQPLTASVQQVLNYLAEHHYV 199          
BLAST of CX288906 vs. ExPASy Swiss-Prot
Match: CYSC_OCEIH (Adenylyl-sulfate kinase OS=Oceanobacillus iheyensis GN=cysC PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.582e-42
Identity = 87/163 (53.37%), Postives = 115/163 (70.55%), Query Frame = 2
Query:    2 KSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLCFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGFTGIDDPYEPPLNCEIEIKQKDGVCPTPNAMAGQVVSYLEEEGYL 490
            KSTL+ ++ KEL+S    +Y LDGDN+RHGLNKNL FS EDR ENIRR+GEV+KL  DAGLI + + ISPY++DRD  RA L    FIE+++   L++CEARDPKGLYK AR G+I  FTGID PYE PL+ EI I  ++    +       ++ YL+++ Y+
Sbjct:   40 KSTLSSALEKELFSLETHTYHLDGDNVRHGLNKNLGFSPEDREENIRRIGEVSKLMVDAGLITLTAFISPYQEDRDHVRATLAQDEFIEIYVKCSLDMCEARDPKGLYKKARLGEINNFTGIDAPYEEPLHPEIVIDTEN---QSIEESVQTIIHYLKDKQYI 199          
BLAST of CX288906 vs. ExPASy Swiss-Prot
Match: CYSC_SHEAM (Adenylyl-sulfate kinase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=cysC PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.066e-42
Identity = 87/163 (53.37%), Postives = 116/163 (71.17%), Query Frame = 2
Query:    2 KSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLCFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGFTGIDDPYEPPLNCEIEIKQKDGVCPTPNAMAGQVVSYLEEEGYL 490
            KSTLA ++  EL+ RG  SY+LDGDN+RHGL K+L FS EDR ENIRRVGEVAKL  DAGL+ +++ +SP R +RD  RA++ +  FIEV +  PL +CE+RDPKGLY+ ARAG+IK FTGI  PYE P++ E+ I   +G     ++   ++V YL   GY+
Sbjct:   37 KSTLAGALEAELFRRGLHSYLLDGDNVRHGLCKDLGFSLEDRRENIRRVGEVAKLMLDAGLLVLSAFVSPQRAERDLVRALVGEGEFIEVHVATPLTVCESRDPKGLYQKARAGEIKDFTGISSPYEAPVSAELVIDTSEG---DLDSQVAKLVDYLISGGYI 196          
BLAST of CX288906 vs. ExPASy Swiss-Prot
Match: CYSC_STAS1 (Adenylyl-sulfate kinase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=cysC PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 4.603e-42
Identity = 87/163 (53.37%), Postives = 111/163 (68.10%), Query Frame = 2
Query:    2 KSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLCFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGFTGIDDPYEPPLNCEIEIKQKDGVCPTPNAMAGQVVSYLEEEGYL 490
            KST++ ++ K LY +   +Y LDGDN+RHGLN NL FS EDR ENIRR+GEV+KL  DAGLI I + ISPY+ DRD  R +L D  FIE++ +  +E CE+RDPKGLY+ AR G+IKGFTGI+ PYE P N EI I  +     T      Q++ YL+   YL
Sbjct:   40 KSTISVALEKALYQQQVHTYRLDGDNVRHGLNNNLGFSPEDRKENIRRIGEVSKLMVDAGLITITAFISPYQADRDEVRNLLDDKEFIEIYTSCSIETCESRDPKGLYQKARNGEIKGFTGINAPYEEPNNPEIIIDTEQDSIET---AVNQIIDYLKVHDYL 199          
The following BLAST results are available for this feature:
BLAST of CX288906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
KAP1_ARATH1.018e-6573.01Adenylyl-sulfate kinase 1, chloroplastic OS=Arabid... [more]
KAPS_CATRO2.269e-6572.39Adenylyl-sulfate kinase, chloroplastic OS=Catharan... [more]
KAP2_ARATH3.622e-6368.29Adenylyl-sulfate kinase 2, chloroplastic OS=Arabid... [more]
CYSC_GEOSF1.690e-4452.44Adenylyl-sulfate kinase OS=Geobacter sp. (strain F... [more]
CYSC_STAES1.431e-4353.99Adenylyl-sulfate kinase OS=Staphylococcus epidermi... [more]
CYSC_STAEQ1.869e-4353.99Adenylyl-sulfate kinase OS=Staphylococcus epidermi... [more]
CYSC_LACPL5.437e-4357.67Adenylyl-sulfate kinase OS=Lactobacillus plantarum... [more]
CYSC_OCEIH1.582e-4253.37Adenylyl-sulfate kinase OS=Oceanobacillus iheyensi... [more]
CYSC_SHEAM2.066e-4253.37Adenylyl-sulfate kinase OS=Shewanella amazonensis ... [more]
CYSC_STAS14.603e-4253.37Adenylyl-sulfate kinase OS=Staphylococcus saprophy... [more]

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Properties
Property NameValue
Genbank descriptionC02006G05SK IF1 Citrus clementina cDNA clone C02006G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288906 ID=CX288906; Name=CX288906; organism=Citrus clementina; type=EST; length=563bp
GAAAAGTACGCTAGCATTTTCGGTTAACAAGGAACTTTATTCTAGGGGAA
AGCTGTCTTATATCCTTGACGGAGATAACCTTCGACATGGACTAAACAAA
AATCTTTGTTTCAGTGCAGAAGATCGAACTGAGAATATACGTAGGGTTGG
GGAAGTAGCAAAGCTTTTTGCGGATGCTGGTTTAATCTGCATTGCCAGTC
TGATATCTCCATATAGAAAAGACCGGGATGCTTGCCGTGCAATGTTGCCA
GATTCAAACTTTATTGAGGTTTTTATGAATATGCCTCTGGAATTGTGTGA
GGCAAGAGATCCAAAAGGACTCTACAAACTTGCGCGGGCTGGAAAGATTA
AAGGTTTCACTGGGATAGATGACCCTTATGAACCACCATTAAATTGCGAG
ATAGAAATAAAGCAGAAAGATGGAGTTTGCCCCACTCCCAATGCTATGGC
AGGACAAGTAGTGTCTTATTTGGAGGAGGAAGGATATCTACATTTTTAGT
GATCTGCTCTCTCCCAAATTTTATTTTATTTTATTTTATTTTTTTGGGGA
CCATCTCACATCT
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