CX288909

Overview
NameCX288909
Unique NameCX288909
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14097 contig Ccv1_Contig14097:437..971. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX288909 vs. ExPASy Swiss-Prot
Match: ERF1Z_ARATH (Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis thaliana GN=ERF1-3 PE=2 SV=1)

HSP 1 Score: 352.058 bits (902), Expect = 1.004e-96
Identity = 173/178 (97.19%), Postives = 177/178 (99.44%), Query Frame = 1 
Query:    1 TSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKIL 534
            TSAQQRLKLYNKVPPNGLVLYTGT+VTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTE LNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQF+INPATSQPNVSGLILAGSADFKTELSQS++FDPRLQAKIL
Sbjct:   74 TSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEPLNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAGSADFKTELSQSELFDPRLQAKIL 251
[Close]
BLAST of CX288909 vs. ExPASy Swiss-Prot
Match: ERF1Y_ARATH (Eukaryotic peptide chain release factor subunit 1-2 OS=Arabidopsis thaliana GN=ERF1-2 PE=2 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 5.507e-95
Identity = 170/178 (95.51%), Postives = 175/178 (98.31%), Query Frame = 1 
Query:    1 TSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKIL 534
            TSAQQRLKLYNKVP NGLVLYTGT+V DDGKEKKVT DFEPF+PINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQF+INPATSQPNVSGLILAGSADFKTELSQS++FDPRLQAKIL
Sbjct:   73 TSAQQRLKLYNKVPTNGLVLYTGTIVNDDGKEKKVTFDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAGSADFKTELSQSELFDPRLQAKIL 250
[Close]
BLAST of CX288909 vs. ExPASy Swiss-Prot
Match: ERF1X_ARATH (Eukaryotic peptide chain release factor subunit 1-1 OS=Arabidopsis thaliana GN=ERF1-1 PE=2 SV=2)

HSP 1 Score: 345.895 bits (886), Expect = 7.193e-95
Identity = 169/178 (94.94%), Postives = 176/178 (98.88%), Query Frame = 1 
Query:    1 TSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKIL 534
            TSAQQRLKLYN+VPPNGLVLYTGT+V +DGKEKKVTIDFEPF+PINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKF+VDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQ++INPATSQPNVSGLILAGSADFKTELSQSDMFDPRL AKIL
Sbjct:   75 TSAQQRLKLYNRVPPNGLVLYTGTIVNEDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQYYINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLAAKIL 252
[Close]
BLAST of CX288909 vs. ExPASy Swiss-Prot
Match: ERF1_POLMI (Eukaryotic peptide chain release factor subunit 1 OS=Polyandrocarpa misakiensis GN=ERF1 PE=2 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 4.094e-82
Identity = 150/178 (84.27%), Postives = 157/178 (88.20%), Query Frame = 1 
Query:    1 TSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKIL 534
            TS QQRLKLYNKVPPNGLV+Y GT+VTD+GKEKKV IDFEPFKPIN SLYLCDNKFHTEAL  LL  D+KFGFIVMDGNG LFGTL GNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE A Q FI     +PNV+GL+LAGSADFKTELSQSDMFD RLQ KIL
Sbjct:   76 TSVQQRLKLYNKVPPNGLVVYCGTIVTDEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDNKFGFIVMDGNGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFI--TNDRPNVTGLVLAGSADFKTELSQSDMFDQRLQVKIL 251
[Close]
BLAST of CX288909 vs. ExPASy Swiss-Prot
Match: ERF1_DROME (Eukaryotic peptide chain release factor subunit 1 OS=Drosophila melanogaster GN=eRF1 PE=1 SV=2)

HSP 1 Score: 302.753 bits (774), Expect = 6.983e-82
Identity = 147/178 (82.58%), Postives = 159/178 (89.33%), Query Frame = 1 
Query:    1 TSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKIL 534
            TS Q RLKLY KVPPNGLV+Y GT+VT++GKEKKV IDFEPFKPIN SLYLCDNKFHTEAL  LL  D+KFGFIVMDGNG LFGTL GNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE+ATQ FI     +PN++GLILAGSADFKTELSQSDMFDPRLQ+K++
Sbjct:   76 TSVQHRLKLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFGFIVMDGNGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEVATQLFI--TNDKPNIAGLILAGSADFKTELSQSDMFDPRLQSKVI 251
[Close]
BLAST of CX288909 vs. ExPASy Swiss-Prot
Match: ERF1_XENTR (Eukaryotic peptide chain release factor subunit 1 OS=Xenopus tropicalis GN=etf1 PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 2.484e-79
Identity = 145/178 (81.46%), Postives = 157/178 (88.20%), Query Frame = 1 
Query:    1 TSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKIL 534
            TS QQRLKLYNKVPPNGLV+Y GT+VT++GKEKKV IDFEPFKPIN SLYLCDNKFHTEAL  LL  D KFGFIV+DG+G LFGTL GNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE A Q FI  +  + NV+GL+LAGSADFKTELSQSDMFD RLQ+K+L
Sbjct:   76 TSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFI--SGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVL 251
[Close]
BLAST of CX288909 vs. ExPASy Swiss-Prot
Match: ERF1_XENLA (Eukaryotic peptide chain release factor subunit 1 OS=Xenopus laevis GN=etf1 PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 2.484e-79
Identity = 145/178 (81.46%), Postives = 157/178 (88.20%), Query Frame = 1 
Query:    1 TSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKIL 534
            TS QQRLKLYNKVPPNGLV+Y GT+VT++GKEKKV IDFEPFKPIN SLYLCDNKFHTEAL  LL  D KFGFIV+DG+G LFGTL GNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE A Q FI  +  + NV+GL+LAGSADFKTELSQSDMFD RLQ+K+L
Sbjct:   76 TSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFI--SGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVL 251
[Close]
BLAST of CX288909 vs. ExPASy Swiss-Prot
Match: ERF1_RAT (Eukaryotic peptide chain release factor subunit 1 OS=Rattus norvegicus GN=Etf1 PE=2 SV=3)

HSP 1 Score: 294.278 bits (752), Expect = 2.484e-79
Identity = 145/178 (81.46%), Postives = 157/178 (88.20%), Query Frame = 1 
Query:    1 TSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKIL 534
            TS QQRLKLYNKVPPNGLV+Y GT+VT++GKEKKV IDFEPFKPIN SLYLCDNKFHTEAL  LL  D KFGFIV+DG+G LFGTL GNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE A Q FI  +  + NV+GL+LAGSADFKTELSQSDMFD RLQ+K+L
Sbjct:   76 TSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFI--SGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVL 251
[Close]
BLAST of CX288909 vs. ExPASy Swiss-Prot
Match: ERF1_RABIT (Eukaryotic peptide chain release factor subunit 1 OS=Oryctolagus cuniculus GN=ETF1 PE=2 SV=3)

HSP 1 Score: 294.278 bits (752), Expect = 2.484e-79
Identity = 145/178 (81.46%), Postives = 157/178 (88.20%), Query Frame = 1 
Query:    1 TSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKIL 534
            TS QQRLKLYNKVPPNGLV+Y GT+VT++GKEKKV IDFEPFKPIN SLYLCDNKFHTEAL  LL  D KFGFIV+DG+G LFGTL GNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE A Q FI  +  + NV+GL+LAGSADFKTELSQSDMFD RLQ+K+L
Sbjct:   76 TSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFI--SGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVL 251
[Close]
BLAST of CX288909 vs. ExPASy Swiss-Prot
Match: ERF1_PONAB (Eukaryotic peptide chain release factor subunit 1 OS=Pongo abelii GN=ETF1 PE=2 SV=3)

HSP 1 Score: 294.278 bits (752), Expect = 2.484e-79
Identity = 145/178 (81.46%), Postives = 157/178 (88.20%), Query Frame = 1 
Query:    1 TSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKIL 534
            TS QQRLKLYNKVPPNGLV+Y GT+VT++GKEKKV IDFEPFKPIN SLYLCDNKFHTEAL  LL  D KFGFIV+DG+G LFGTL GNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE A Q FI  +  + NV+GL+LAGSADFKTELSQSDMFD RLQ+K+L
Sbjct:   76 TSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFI--SGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVL 251
The following BLAST results are available for this feature:
BLAST of CX288909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
ERF1Z_ARATH1.004e-9697.19Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1Y_ARATH5.507e-9595.51Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1X_ARATH7.193e-9594.94Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1_POLMI4.094e-8284.27Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DROME6.983e-8282.58Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_XENTR2.484e-7981.46Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_XENLA2.484e-7981.46Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_RAT2.484e-7981.46Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_RABIT2.484e-7981.46Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_PONAB2.484e-7981.46Eukaryotic peptide chain release factor subunit 1 ... [more]

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Properties
Property NameValue
Genbank descriptionC02006G09SK IF1 Citrus clementina cDNA clone C02006G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288909 ID=CX288909; Name=CX288909; organism=Citrus clementina; type=EST; length=535bp
ACTTCTGCTCAGCAGAGGCTGAAGCTATATAACAAGGTTCCTCCCAATGG
GTTGGTGCTTTATACTGGAACAGTTGTTACTGACGACGGCAAGGAAAAGA
AAGTGACAATTGACTTTGAGCCTTTCAAGCCTATAAATGCATCGTTGTAT
CTCTGTGATAACAAGTTTCACACTGAAGCCTTGAATGAACTCTTAGAATC
TGATGACAAATTTGGGTTTATTGTCATGGATGGAAATGGCACCCTATTTG
GCACATTAAGTGGAAACACAAGAGAGGTGCTTCATAAGTTTACTGTTGAT
CTGCCGAAGAAGCATGGAAGAGGAGGGCAGTCAGCTCTTCGCTTTGCTCG
TCTTCGGATGGAGAAACGGCACAACTATGTGAGGAAGACAGCAGAGCTTG
CTACACAGTTCTTTATCAATCCTGCTACCAGTCAGCCCAATGTGTCTGGG
TTAATTCTTGCTGGTTCTGCTGATTTCAAAACTGAGCTGAGCCAGTCTGA
TATGTTTGATCCTCGTTTACAAGCCAAGATATTGA
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