CX288924
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: IMP4_RAT (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Rattus norvegicus GN=Imp4 PE=2 SV=1) HSP 1 Score: 238.424 bits (607), Expect = 2.153e-62 Identity = 115/193 (59.59%), Postives = 147/193 (76.17%), Query Frame = 3 Query: 3 FVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQ-SEAQIEWVIRPYMNTSKKRKFL 578 F KELK VFP AQRMNRG + ++ C+A+ TD+++VHEHRG P GLI+ HLPFGPTAYF L NVV RHDI D +GTM EA PHLI F S+LG+R ++IL++LFPVPK D+ R+ITFANQ DYISFRHH+Y+K +++EL E+GPRFEL+LY I+LGT++Q + A +EW PY NT++KR FL Sbjct: 100 FAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKT-DHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: IMP4_PONAB (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Pongo abelii GN=IMP4 PE=2 SV=2) HSP 1 Score: 238.424 bits (607), Expect = 2.153e-62 Identity = 115/193 (59.59%), Postives = 147/193 (76.17%), Query Frame = 3 Query: 3 FVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQ-SEAQIEWVIRPYMNTSKKRKFL 578 F KELK VFP AQRMNRG + ++ C+A+ TD+++VHEHRG P GLI+ HLPFGPTAYF L NVV RHDI D +GTM EA PHLI F S+LG+R ++IL++LFPVPK D+ R+ITFANQ DYISFRHH+Y+K +++EL E+GPRFEL+LY I+LGT++Q + A +EW PY NT++KR FL Sbjct: 100 FAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKT-DHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: IMP4_MOUSE (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Mus musculus GN=Imp4 PE=2 SV=1) HSP 1 Score: 238.424 bits (607), Expect = 2.153e-62 Identity = 115/193 (59.59%), Postives = 147/193 (76.17%), Query Frame = 3 Query: 3 FVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQ-SEAQIEWVIRPYMNTSKKRKFL 578 F KELK VFP AQRMNRG + ++ C+A+ TD+++VHEHRG P GLI+ HLPFGPTAYF L NVV RHDI D +GTM EA PHLI F S+LG+R ++IL++LFPVPK D+ R+ITFANQ DYISFRHH+Y+K +++EL E+GPRFEL+LY I+LGT++Q + A +EW PY NT++KR FL Sbjct: 100 FAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKT-DHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: IMP4_HUMAN (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Homo sapiens GN=IMP4 PE=1 SV=1) HSP 1 Score: 238.424 bits (607), Expect = 2.153e-62 Identity = 115/193 (59.59%), Postives = 147/193 (76.17%), Query Frame = 3 Query: 3 FVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQ-SEAQIEWVIRPYMNTSKKRKFL 578 F KELK VFP AQRMNRG + ++ C+A+ TD+++VHEHRG P GLI+ HLPFGPTAYF L NVV RHDI D +GTM EA PHLI F S+LG+R ++IL++LFPVPK D+ R+ITFANQ DYISFRHH+Y+K +++EL E+GPRFEL+LY I+LGT++Q + A +EW PY NT++KR FL Sbjct: 100 FAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKT-DHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: IMP4_BOVIN (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Bos taurus GN=IMP4 PE=2 SV=1) HSP 1 Score: 237.654 bits (605), Expect = 3.672e-62 Identity = 114/193 (59.07%), Postives = 147/193 (76.17%), Query Frame = 3 Query: 3 FVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQ-SEAQIEWVIRPYMNTSKKRKFL 578 F KELK VFP AQRMNRG + ++ C+A+ TD+++VHEHRG P GLI+ HLPFGPTAYF L NVV RHDI D +GT EA PHLI+ F S+LG+R ++IL++LFPVPK D++R+ITFANQ DYISFRHH+Y+K +++EL E+GPRFEL+LY I+LGT++Q + A +EW PY NT+ KR FL Sbjct: 100 FAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LGTASEAKPHLIMHGFSSRLGKRVSDILRYLFPVPKDDSRRVITFANQDDYISFRHHVYKKT-NHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTAHKRVFL 288
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: YHPK_CAEEL (Brix domain-containing protein ZK795.3 OS=Caenorhabditis elegans GN=ZK795.3 PE=2 SV=1) HSP 1 Score: 232.261 bits (591), Expect = 1.543e-60 Identity = 110/193 (56.99%), Postives = 144/193 (74.61%), Query Frame = 3 Query: 3 FVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQ-SEAQIEWVIRPYMNTSKKRKFL 578 F KE+K +FPNAQR+NRG + ++++ +A + TD+++ E RG PDG+++CHLPFGPTA+F + NVV RHDI + GTM E YPHLI DN SKLG R ILKHLFPVPK D+KRIITF+N DYISFRHH+Y+ + + +EL E GPRFEL+ YQIKLGT++ + A+ EWV+R Y NT++KR FL Sbjct: 95 FAKEMKLIFPNAQRINRGHYDVKQVVQASKAQDSTDLIIFTETRGNPDGMLVCHLPFGPTAFFSMANVVMRHDI---PNCGTMSEQYPHLIFDNLNSKLGHRFTTILKHLFPVPKPDSKRIITFSNSEDYISFRHHVYKTENDGE-VELTEAGPRFELKPYQIKLGTLETLAAAEDEWVLRSYTNTARKRTFL 283
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: IMP4_SCHPO (U3 small nucleolar ribonucleoprotein protein imp4 OS=Schizosaccharomyces pombe GN=imp4 PE=2 SV=1) HSP 1 Score: 216.468 bits (550), Expect = 8.761e-56 Identity = 102/183 (55.74%), Postives = 132/183 (72.13%), Query Frame = 3 Query: 3 FVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPY 548 F KE++ + PN+ R+NRG V+ ++E RA++ TD+V++HEHRG+PDGL+I HLP+GPT F L NVV RHDI + GTM EAYPHLI +N SKLG+R L LFP PK T R++TFAN DYISFRHHIY K GPK + L E GPRFE++L++I LGTVD +A +EW ++PY Sbjct: 101 FAKEVRLLIPNSYRLNRGNIVVGSLVEAARANDITDIVILHEHRGIPDGLVISHLPYGPTLSFSLHNVVLRHDI---PNTGTMSEAYPHLIFENLTSKLGKRVKTALSALFPPDPKDTTPRVVTFANTDDYISFRHHIYAKT-GPKQIILSEAGPRFEMKLFEITLGTVDMVDADVEWKLKPY 279
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: IMP4_YARLI (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Yarrowia lipolytica GN=IMP4 PE=3 SV=1) HSP 1 Score: 201.83 bits (512), Expect = 2.233e-51 Identity = 93/193 (48.19%), Postives = 132/193 (68.39%), Query Frame = 3 Query: 3 FVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFL 578 F KE+K +FP + R+NRGG V+ ++ C+ +D++++HEHRGVP + + H P GPTAYF L NVV RHD+ D G M E +PHLI DNF + LG+R ILKHLFP K D+ R+ITFAN+ D+IS R H+Y K + +EL E+GPRFE+RLY ++LGT++ +A +EW + +M T+ K+ +L Sbjct: 96 FAKEVKLLFPTSIRLNRGGTVLPSLVSACKTSASSDLIVLHEHRGVPTAMTVSHFPHGPTAYFSLHNVVLRHDLPD---TGNMSEVHPHLIFDNFTTDLGKRVVQILKHLFPPGVKKDSARVITFANRGDFISVRQHVYVKT--REGVELAEVGPRFEMRLYDLRLGTLENKDADVEWRMHGFMRTANKKDYL 283
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: IMP4_CANGA (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Candida glabrata GN=IMP4 PE=3 SV=1) HSP 1 Score: 201.445 bits (511), Expect = 2.917e-51 Identity = 91/193 (47.15%), Postives = 135/193 (69.95%), Query Frame = 3 Query: 3 FVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFL 578 F KE+K +FPNA R+NRG V+++++ C+ TD++++HEHRGVP L + H P+GPTA+F L NVV RHDI +R G E PHLI DNF + LG R ILK+LFP PK D+ R+ITFAN+ D+IS R H+Y + +E+ E+GPRFE+RL++++LGT++ +A +EW +R ++ T+ ++ +L Sbjct: 101 FAKEIKLLFPNAVRLNRGNYVMADLVSACKKSGTTDLIVLHEHRGVPTSLTVSHFPYGPTAFFSLHNVVLRHDILNR---GNQSEVNPHLIFDNFTTPLGNRVVTILKNLFPPGPKKDSSRVITFANRGDFISVRQHVYVRT--KDGVEMAEVGPRFEMRLFELRLGTLENKDADVEWQLRRFVRTANRKDYL 288
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: IMP4_DEBHA (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Debaryomyces hansenii GN=IMP4 PE=3 SV=2) HSP 1 Score: 198.364 bits (503), Expect = 2.469e-50 Identity = 88/194 (45.36%), Postives = 136/194 (70.10%), Query Frame = 3 Query: 3 FVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFLG 581 F KE+K +FPN+ ++NRG VI++++ TC+ + +D++++HEHRG+P L I H P GP+ F L NV RHD+ + IG E+YPHL+ +NF S+LG+R I+KHLFP K D+ R+ITF N D+IS RHH+Y K ++EL E+GPRFE+RLY+++LG +D ++++EW +R ++ T ++ +LG Sbjct: 96 FSKEIKLMFPNSIKLNRGNYVITDLVATCQRVQISDLIILHEHRGIPTSLTISHFPHGPSIIFTLHNVKLRHDLPE---IGNSSESYPHLVFENFTSELGKRVVKIMKHLFPPGVKKDSSRVITFINNDDFISVRHHMYVKT--KDTVELSEVGPRFEMRLYELRLGLLDNKDSEVEWQLRRFIRTGNRKNYLG 284 The following BLAST results are available for this feature:
BLAST of CX288924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 22
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288924 ID=CX288924; Name=CX288924; organism=Citrus clementina; type=EST; length=617bpback to top |