CX288925

Overview
NameCX288925
Unique NameCX288925
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length527
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1057 contig Ccv1_Contig1057:66..592. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288925 vs. ExPASy Swiss-Prot
Match: MSBP2_ARATH (Membrane steroid-binding protein 2 OS=Arabidopsis thaliana GN=MSBP2 PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 7.454e-49
Identity = 101/165 (61.21%), Postives = 116/165 (70.30%), Query Frame = 2
Query:   38 DTVTSYTGLSPAAFFTILALMCVVYKTVCSMFVDPEP--PEDLKNKLIXXXXXXXXXXXXNFSNQTVIPETVQLGEVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSDSELEVLQDWEYKFMEK 526
            +T+T+YTGLSPAAFFT+LAL   VY+ V   FV PE   P  L+ +                     +P  VQLGE+TE EL+ YDGSD  KPLLMAIKGQIYDVS+SRMFYGPGGPYA+FAG+DASRALA MSF+ QDLTG+I GL   ELE LQDWEYKFM K
Sbjct:   11 ETITAYTGLSPAAFFTVLALAFAVYQVVSGFFVSPEVHRPRSLEVQ----------------PQSEPLPPPVQLGEITEEELKLYDGSDSKKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEDQDLTGDISGLGAFELEALQDWEYKFMSK 159          
BLAST of CX288925 vs. ExPASy Swiss-Prot
Match: MSBP1_ARATH (Membrane steroid-binding protein 1 OS=Arabidopsis thaliana GN=MSBP1 PE=1 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 1.043e-42
Identity = 86/163 (52.76%), Postives = 108/163 (66.26%), Query Frame = 2
Query:   38 DTVTSYTGLSPAAFFTILALMCVVYKTVCSMFVDPEPPEDLKNKLIXXXXXXXXXXXXNFSNQTVIPETVQLGEVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSDSELEVLQDWEYKFMEK 526
            + + +YTGLSP  FFT LAL   +Y+ +   F  P    +   +                  +  IP+ VQ+GE+TE EL+ YDGSDP KPLLMAIK QIYDV++SRMFYGPGGPYA+FAG+DASRALA MSF+ +DLT ++ GL   EL+ LQDWEYKFM K
Sbjct:   11 EAIHAYTGLSPVVFFTALALAFAIYQVISGWFASPFDDVNRHQRARSLAQ----------EEEPPIPQPVQVGEITEEELKQYDGSDPQKPLLMAIKHQIYDVTQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTWDVSGLGPFELDALQDWEYKFMSK 163          
BLAST of CX288925 vs. ExPASy Swiss-Prot
Match: SBP3_ARATH (Probable steroid-binding protein 3 OS=Arabidopsis thaliana GN=MP3 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.576e-21
Identity = 44/90 (48.89%), Postives = 66/90 (73.33%), Query Frame = 2
Query:  257 EVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSDSELEVLQDWEYKFMEK 526
            E T  +L  Y+G+D +KP+ +AIKG+++DV+  + FYG GG Y+MFAG+DASRAL  MS + +D++ ++EGL++ E+  L DWE KF  K
Sbjct:    2 EFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMSKNEEDVSPSLEGLTEKEINTLNDWETKFEAK 91          
BLAST of CX288925 vs. ExPASy Swiss-Prot
Match: NENF_RAT (Neudesin OS=Rattus norvegicus GN=Nenf PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.826e-17
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 2
Query:  263 TEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSDSELEVLQD 502
            TE EL  Y G + ++P+ +A+KG ++DV+  + FYG G PY   AG+D+SR +A MS DP DLT +I GL+  ELE L D
Sbjct:   47 TEEELARYSGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALAGKDSSRGVAKMSLDPADLTHDISGLTAKELEALDD 126          
BLAST of CX288925 vs. ExPASy Swiss-Prot
Match: PGRC1_RAT (Membrane-associated progesterone receptor component 1 OS=Rattus norvegicus GN=Pgrmc1 PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 6.369e-16
Identity = 45/94 (47.87%), Postives = 59/94 (62.77%), Query Frame = 2
Query:  257 EVTEHELRAYDG-SDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSD---SELEVLQDWEYKFMEK 526
            + T  ELR YDG  DP   +LMAI G+++DV++ R FYGP GPY +FAGRDASR LA    D + L    + LSD   ++ E L DW+ +F  K
Sbjct:   72 DFTPAELRRYDGVQDPR--ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLNDWDSQFTFK 163          
BLAST of CX288925 vs. ExPASy Swiss-Prot
Match: NENF_MOUSE (Neudesin OS=Mus musculus GN=Nenf PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.369e-16
Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = 2
Query:  263 TEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSDSELEVLQD 502
            TE EL  Y G + ++P+ +A+KG ++DV+  + FYG G PY   AG+D+SR +A MS DP DLT +  GL+  ELE L D
Sbjct:   47 TEEELARYGGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALAGKDSSRGVAKMSLDPADLTHDTTGLTAKELEALDD 126          
BLAST of CX288925 vs. ExPASy Swiss-Prot
Match: PGRC1_PONAB (Membrane-associated progesterone receptor component 1 OS=Pongo abelii GN=PGRMC1 PE=2 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 8.318e-16
Identity = 45/94 (47.87%), Postives = 59/94 (62.77%), Query Frame = 2
Query:  257 EVTEHELRAYDG-SDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSD---SELEVLQDWEYKFMEK 526
            + T  ELR +DG  DP   +LMAI G+++DV++ R FYGP GPY +FAGRDASR LA    D + L    + LSD   ++ E L DWE +F  K
Sbjct:   72 DFTPAELRRFDGVQDPR--ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTAAQQETLSDWESQFTFK 163          
BLAST of CX288925 vs. ExPASy Swiss-Prot
Match: PGRC1_HUMAN (Membrane-associated progesterone receptor component 1 OS=Homo sapiens GN=PGRMC1 PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 8.318e-16
Identity = 45/94 (47.87%), Postives = 59/94 (62.77%), Query Frame = 2
Query:  257 EVTEHELRAYDG-SDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSD---SELEVLQDWEYKFMEK 526
            + T  ELR +DG  DP   +LMAI G+++DV++ R FYGP GPY +FAGRDASR LA    D + L    + LSD   ++ E L DWE +F  K
Sbjct:   72 DFTPAELRRFDGVQDPR--ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTAAQQETLSDWESQFTFK 163          
BLAST of CX288925 vs. ExPASy Swiss-Prot
Match: PGRC1_CHICK (Membrane-associated progesterone receptor component 1 OS=Gallus gallus GN=PGRMC1 PE=2 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 8.318e-16
Identity = 44/94 (46.81%), Postives = 61/94 (64.89%), Query Frame = 2
Query:  257 EVTEHELRAYDG-SDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSD---SELEVLQDWEYKFMEK 526
            + T  +LR YDG  DP   +LMA+ G+++DV+R+  FYGP GPY +FAGRDASR LA    D + L  + + LSD   ++ E L+DWE +F  K
Sbjct:   70 DFTLEQLRPYDGVRDPR--ILMAVNGKVFDVTRASKFYGPDGPYGIFAGRDASRGLATFCLDKEALRDDYDDLSDLNATQQETLRDWESQFTFK 161          
BLAST of CX288925 vs. ExPASy Swiss-Prot
Match: PGRC1_PIG (Membrane-associated progesterone receptor component 1 OS=Sus scrofa GN=PGRMC1 PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 1.853e-15
Identity = 44/94 (46.81%), Postives = 59/94 (62.77%), Query Frame = 2
Query:  257 EVTEHELRAYDG-SDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSD---SELEVLQDWEYKFMEK 526
            + T  ELR +DG  DP   +LMAI G+++DV++ R FYGP GPY +FAGRDASR LA    D + L    + LSD   ++ E L DW+ +F  K
Sbjct:   71 DFTPAELRRFDGVQDPR--ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLNDWDSQFTFK 162          
The following BLAST results are available for this feature:
BLAST of CX288925 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
MSBP2_ARATH7.454e-4961.21Membrane steroid-binding protein 2 OS=Arabidopsis ... [more]
MSBP1_ARATH1.043e-4252.76Membrane steroid-binding protein 1 OS=Arabidopsis ... [more]
SBP3_ARATH6.576e-2148.89Probable steroid-binding protein 3 OS=Arabidopsis ... [more]
NENF_RAT9.826e-1748.75Neudesin OS=Rattus norvegicus GN=Nenf PE=2 SV=1[more]
PGRC1_RAT6.369e-1647.87Membrane-associated progesterone receptor componen... [more]
NENF_MOUSE6.369e-1647.50Neudesin OS=Mus musculus GN=Nenf PE=1 SV=1[more]
PGRC1_PONAB8.318e-1647.87Membrane-associated progesterone receptor componen... [more]
PGRC1_HUMAN8.318e-1647.87Membrane-associated progesterone receptor componen... [more]
PGRC1_CHICK8.318e-1646.81Membrane-associated progesterone receptor componen... [more]
PGRC1_PIG1.853e-1546.81Membrane-associated progesterone receptor componen... [more]

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Properties
Property NameValue
Genbank descriptionC02007A04SK IF1 Citrus clementina cDNA clone C02007A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288925 ID=CX288925; Name=CX288925; organism=Citrus clementina; type=EST; length=527bp
AGCTTACACAATGGTGGCGTTTTTCGCAGCGGTGATGGACACGGTCACCA
GCTACACCGGACTATCACCGGCGGCTTTCTTCACAATCCTGGCCCTTATG
TGCGTGGTTTATAAAACGGTTTGTAGCATGTTCGTTGACCCAGAGCCGCC
AGAAGACTTGAAGAACAAGCTCATCAGCTCCAGCGCCGCGGCGTAGGCGG
CGACGGCGGCTAACTTTTCGAACCAAACGGTGATCCCCGAAACGGTGCAG
CTAGGAGAAGTCACTGAACATGAGTTGAGAGCTTATGATGGTTCTGACCC
TAATAAGCCTCTTTTGATGGCTATCAAGGGACAAATCTACGACGTCTCTC
GCTCCAGGATGTTCTATGGACCTGGAGGGCCATATGCAATGTTTGCTGGA
AGGGACGCCAGTAGAGCCTTAGCTCTTATGTCTTTTGACCCTCAAGACCT
AACTGGGAATATTGAAGGCCTTAGTGATTCTGAGCTTGAAGTTCTGCAAG
ATTGGGAATATAAATTCATGGAAAAAT
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