CX288979

Overview
NameCX288979
Unique NameCX288979
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length561
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX288979 vs. ExPASy Swiss-Prot
Match: BIN4_ARATH (DNA-binding protein BIN4 OS=Arabidopsis thaliana GN=BIN4 PE=1 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 1.668e-44
Identity = 87/119 (73.11%), Postives = 105/119 (88.24%), Query Frame = 2 
Query:  203 STSTLPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFDSEDE 559
            S+S LPLV+SEK+ RTK LVECEG+S+DLSGDMGAVGR++V  T     +M+LDLKGTIYK+T++PSRTFC+V+ G +EAKIEAIMNDFIQL PQSNVYEAETMVEGTL+GF F+S+DE
Sbjct:  271 SSSRLPLVLSEKVNRTKVLVECEGDSIDLSGDMGAVGRVVVSDTTG---DMYLDLKGTIYKSTIIPSRTFCVVNVGQTEAKIEAIMNDFIQLIPQSNVYEAETMVEGTLEGFTFESDDE 386
The following BLAST results are available for this feature:
BLAST of CX288979 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
BIN4_ARATH1.668e-4473.11DNA-binding protein BIN4 OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionC02007F03SK IF1 Citrus clementina cDNA clone C02007F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288979 ID=CX288979; Name=CX288979; organism=Citrus clementina; type=EST; length=561bp
GGAATTCGGCACGAGGGCAGCTGTGACTGGTAGAGAAGAAAAGACTTCAG
TTAAGAAGGTTTCAAAAGAAAAGTCTCCTAAGAAAGGGCTAAAATCACCA
AAGAAAGAAAAGGATGTAGTTAATAATGTGAAAAGAAAAGGAAACAATGA
CCATGAAGATGCTGAGGAAGACATAGCGGAGAAGCGTAGTATGCTTAATG
TCTCTACCTCGACATTGCCTTTGGTGATGTCAGAGAAACTCCAACGTACT
AAGGCACTCGTGGAGTGTGAAGGGGAGTCCGTAGATCTGAGTGGCGATAT
GGGGGCTGTTGGAAGAATACTAGTTCCTGGTACTGCTGAGGGAAACCATG
AAATGTTCTTGGACTTAAAAGGAACCATATACAAAACAACATTAGTTCCT
TCCAGGACATTTTGCATTGTTAGCTTTGGCCACTCAGAGGCTAAGATAGA
GGCCATCATGAATGACTTTATTCAGCTGAAGCCACAGTCTAATGTTTATG
AAGCTGAGACTATGGTTGAAGGAACATTGGATGGTTTCTTATTTGATTCG
GAAGATGAATC
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