CX288986

Overview
NameCX288986
Unique NameCX288986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11260 contig Ccv1_Contig11260:858..1399. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288986 vs. ExPASy Swiss-Prot
Match: SNX2_MOUSE (Sorting nexin-2 OS=Mus musculus GN=Snx2 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.551e-12
Identity = 46/180 (25.56%), Postives = 88/180 (48.89%), Query Frame = 3
Query:    9 YEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGD-ALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETM-KLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLD 542
            +E+ +     L+  L +       LV   +EL  + + F K+A +LG  E   AL +A S+L    E +    Q +A      F E L DY+R + ++K     R   +++  +   T+ K +E     ++  + DK+ +A+ E +E +A+ +   R FE I + + +E+ RF++++  D
Sbjct:  306 FEEKQQQFENLDQQLRKLHASVEALVCHRKELSANTAAFAKSAAMLGNSEDHTALSRALSQLAEVEEKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRMKCWQKWEDAQITLLKKRETEAKMMVANKPDKIQQAKNEIREWEAKVQQGERDFEQISKTIRKEVGRFEKERVKD 485          
BLAST of CX288986 vs. ExPASy Swiss-Prot
Match: SNX2_HUMAN (Sorting nexin-2 OS=Homo sapiens GN=SNX2 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.025e-12
Identity = 46/180 (25.56%), Postives = 88/180 (48.89%), Query Frame = 3
Query:    9 YEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGD-ALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETM-KLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLD 542
            +E+ +     L+  L +       LV   +EL  + + F K+A +LG  E   AL +A S+L    E +    Q +A      F E L DY+R + ++K     R   +++  +   T+ K +E     ++  + DK+ +A+ E +E +A+ +   R FE I + + +E+ RF++++  D
Sbjct:  306 FEEKQQQFENLDQQLRKLHVSVEALVCHRKELSANTAAFAKSAAMLGNSEDHTALSRALSQLAEVEEKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRMKCWQKWEDAQITLLKKREAEAKMMVANKPDKIQQAKNEIREWEAKVQQGERDFEQISKTIRKEVGRFEKERVKD 485          
BLAST of CX288986 vs. ExPASy Swiss-Prot
Match: SNX2_BOVIN (Sorting nexin-2 OS=Bos taurus GN=SNX2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.893e-12
Identity = 45/180 (25.00%), Postives = 87/180 (48.33%), Query Frame = 3
Query:    9 YEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGD-ALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETM-KLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLD 542
            +E+ +      +  L +       LV   +EL  + + F K+A +LG  E   AL +A S+L    E +    Q +A      F E L DY+R + ++K     R   +++  +   T+ K +E     ++  + DK+ +A+ E +E +A+ +   R FE I + + +E+ RF++++  D
Sbjct:  306 FEEKQQQFENQDQQLRKLHASVEALVCHRKELSANTAAFAKSAAMLGNSEDHTALSRALSQLAEVEEKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRVKCWQKWEDAQITLLKKRETEAKMMVANKPDKIQQAKNEIREWEAKVQQGERDFEQISKTIRKEVGRFEKERVKD 485          
BLAST of CX288986 vs. ExPASy Swiss-Prot
Match: SNX1_PONAB (Sorting nexin-1 OS=Pongo abelii GN=SNX1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.820e-11
Identity = 50/179 (27.93%), Postives = 86/179 (48.04%), Query Frame = 3
Query:   12 EKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGD-ALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAF-RQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLD 542
            EKL+    E E  L +       LV   +EL  + + F K+  +LG+ E + AL +A S+L    E +    Q +A+       E L DY+R +  ++A   +R   + R Q   A   K +E     L   + DK+ +A+ E  E ++      R FE I  ++ +E++RF+++K+ D
Sbjct:  311 EKLQEVECE-EQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKPDKLQQAKDEILEWESRVTQYERDFERISTVVRKEVIRFEKEKSKD 488          
BLAST of CX288986 vs. ExPASy Swiss-Prot
Match: SNX1_HUMAN (Sorting nexin-1 OS=Homo sapiens GN=SNX1 PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 3.820e-11
Identity = 50/179 (27.93%), Postives = 86/179 (48.04%), Query Frame = 3
Query:   12 EKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGD-ALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAF-RQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLD 542
            EKL+    E E  L +       LV   +EL  + + F K+  +LG+ E + AL +A S+L    E +    Q +A+       E L DY+R +  ++A   +R   + R Q   A   K +E     L   + DK+ +A+ E  E ++      R FE I  ++ +E++RF+++K+ D
Sbjct:  311 EKLQEVECE-EQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKPDKLQQAKDEILEWESRVTQYERDFERISTVVRKEVIRFEKEKSKD 488          
BLAST of CX288986 vs. ExPASy Swiss-Prot
Match: SNX1_BOVIN (Sorting nexin-1 OS=Bos taurus GN=SNX1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.989e-11
Identity = 48/179 (26.82%), Postives = 88/179 (49.16%), Query Frame = 3
Query:   12 EKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGD-ALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETM-KLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLD 542
            EKL+    E E  L +       LV   +EL  + + F K+  +LG+ E + AL +A S+L    E +    Q +A+       E L DY+R +  ++A   +R   +++  +   T+ K +E     L   + DK+ +A+ E  E ++      R FE I  ++ +E++RF+++K+ D
Sbjct:  311 EKLQEVECE-EQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQTTLQKKREAEARLLWANKPDKLQQAKDEIVEWESRVTQYERDFERISTVVRKEVIRFEKEKSRD 488          
BLAST of CX288986 vs. ExPASy Swiss-Prot
Match: SNX1_MACFA (Sorting nexin-1 OS=Macaca fascicularis GN=SNX1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.516e-11
Identity = 50/179 (27.93%), Postives = 86/179 (48.04%), Query Frame = 3
Query:   12 EKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGD-ALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAF-RQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLD 542
            EKL+    E E  L +       LV   +EL  + + F K+  +LG+ E + AL +A S+L    E +    Q +A+       E L DY+R +  ++A   +R   + R Q   A   K +E     L   + DK+ +A+ E  E ++      R FE I  ++ +E++RF+++K+ D
Sbjct:  311 EKLQEVECE-EQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKPDKLQQAKDEILEWESRVTQYERDFERISTVVRKEVMRFEKEKSKD 488          
BLAST of CX288986 vs. ExPASy Swiss-Prot
Match: SNX2_PONAB (Sorting nexin-2 OS=Pongo abelii GN=SNX2 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.510e-11
Identity = 46/184 (25.00%), Postives = 88/184 (47.83%), Query Frame = 3
Query:    9 YEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGD-ALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAET-MKLKEINLDKLMLTRSDKVGEAEIEYK----ELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLD 542
            +E+ +     L+  L +       LV   +EL  + + F K+A +LG  E   AL +A S+L    E +    Q +A      F E L DY+R + ++K     R   +++  +   T +K +E     ++  + DK+ +A+ E +    E +A+ +   R FE I + + +E+ RF++++  D
Sbjct:  306 FEEKQQQFENLDQQLRKLHASVEALVCHRKELSANTAAFAKSAAMLGNSEDHTALSRALSQLAEVEEKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRMKCWQKWEDAQITLLKKREAEAKMMVANKPDKIQQAKNEIREEIEEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKD 489          
BLAST of CX288986 vs. ExPASy Swiss-Prot
Match: SNX2_MACFA (Sorting nexin-2 OS=Macaca fascicularis GN=SNX2 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.510e-11
Identity = 46/184 (25.00%), Postives = 88/184 (47.83%), Query Frame = 3
Query:    9 YEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGD-ALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAET-MKLKEINLDKLMLTRSDKVGEAEIEYK----ELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLD 542
            +E+ +     L+  L +       LV   +EL  + + F K+A +LG  E   AL +A S+L    E +    Q +A      F E L DY+R + ++K     R   +++  +   T +K +E     ++  + DK+ +A+ E +    E +A+ +   R FE I + + +E+ RF++++  D
Sbjct:  306 FEEKQQQFENLDQQLRKLHASVEALVCHRKELSANTAAFAKSAAMLGNSEDHTALSRALSQLAEVEEKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRMKCWQKWEDAQITLLKKREAEAKMMVANKPDKIQQAKNEIREEIEEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKD 489          
The following BLAST results are available for this feature:
BLAST of CX288986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
SNX2_MOUSE1.551e-1225.56Sorting nexin-2 OS=Mus musculus GN=Snx2 PE=1 SV=2[more]
SNX2_HUMAN2.025e-1225.56Sorting nexin-2 OS=Homo sapiens GN=SNX2 PE=1 SV=2[more]
SNX2_BOVIN5.893e-1225.00Sorting nexin-2 OS=Bos taurus GN=SNX2 PE=2 SV=1[more]
SNX1_PONAB3.820e-1127.93Sorting nexin-1 OS=Pongo abelii GN=SNX1 PE=2 SV=1[more]
SNX1_HUMAN3.820e-1127.93Sorting nexin-1 OS=Homo sapiens GN=SNX1 PE=1 SV=3[more]
SNX1_BOVIN4.989e-1126.82Sorting nexin-1 OS=Bos taurus GN=SNX1 PE=2 SV=1[more]
SNX1_MACFA6.516e-1127.93Sorting nexin-1 OS=Macaca fascicularis GN=SNX1 PE=... [more]
SNX2_PONAB8.510e-1125.00Sorting nexin-2 OS=Pongo abelii GN=SNX2 PE=2 SV=1[more]
SNX2_MACFA8.510e-1125.00Sorting nexin-2 OS=Macaca fascicularis GN=SNX2 PE=... [more]
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Properties
Property NameValue
Genbank descriptionC02007F12SK IF1 Citrus clementina cDNA clone C02007F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288986 ID=CX288986; Name=CX288986; organism=Citrus clementina; type=EST; length=542bp
ATCCTGAATACGAGAAGCTGAAACACTACATTTTTGAGCTTGAAAACCAC
TTGGCTGAAGCTCAGAAACATGCATATCGTCTTGTCAAAAGACATAGAGA
GTTGGGGGAATCTCTATCTGATTTTGGGAAGGCAGCTAAGCTTCTTGGTG
CTTGTGAAGGAGATGCTCTTGGAAAGGCGTTCTCTGAGCTTGGGATGAAA
TCTGAGGCATTATCAGTAAAGCTGCAAAGAGAGGCCCATCAACTTCTTAT
GAATTTTGAAGAACCTTTGAAGGATTATGTTCGAGCTGTGCAATCCATAA
AGGCAACGATAGCAGAGAGAGCCAATGCCTTCAGGCAACAATGTGAACTT
GCTGAAACAATGAAGTTGAAGGAGATAAATCTTGACAAACTCATGTTAAC
ACGATCTGATAAGGTTGGTGAGGCTGAGATTGAATACAAGGAGTTGAAGG
CAGAGAGTGAGGACTCGACTAGGAGATTTGAAACAATCGTGCGCTTAATG
AATGAAGAGATTGTACGTTTTCAGGAACAGAAAACATTGGAT
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