CX288998

Overview
NameCX288998
Unique NameCX288998
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length267
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288998 vs. ExPASy Swiss-Prot
Match: TRPA_ANAVT (Tryptophan synthase alpha chain OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=trpA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.052e-20
Identity = 47/82 (57.32%), Postives = 58/82 (70.73%), Query Frame = 2
Query:    5 ALKLLDSCGSDIIELSVPYSDPLTDGPDMQAAATRS*ARGTNWNAILSMLKEEVPQMLCPMASFTYYKPILRRGVDNFMSTV 250
            ALK+LDS G+DIIEL +PYSDPL DGP +QAAATR+   GT   ++L MLK   P +  P+  FTYY  IL RG+DNF+  V
Sbjct:   36 ALKILDSNGADIIELGIPYSDPLADGPVIQAAATRALQNGTKLESVLEMLKVTTPSLQAPIVLFTYYNSILHRGIDNFLEQV 117          
BLAST of CX288998 vs. ExPASy Swiss-Prot
Match: TRPA_TRIEI (Tryptophan synthase alpha chain OS=Trichodesmium erythraeum (strain IMS101) GN=trpA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.421e-19
Identity = 44/86 (51.16%), Postives = 63/86 (73.26%), Query Frame = 2
Query:    2 EALKLLDSCGSDIIELSVPYSDPLTDGPDMQAAATRS*ARGTNWNAILSMLKEEVPQMLCPMASFTYYKPILRRGVDNFMSTV*DI 259
            +AL++LD  G+++IEL VPYSDPL DGP +QAAATRS  RGT   ++L +++   P++  P+  FTYY PIL RGV+NF+  + D+
Sbjct:   36 KALEVLDRSGANMIELGVPYSDPLADGPVIQAAATRSLNRGTTLESVLEVVQTVSPKLRSPIILFTYYNPILYRGVENFLKKIYDV 121          
BLAST of CX288998 vs. ExPASy Swiss-Prot
Match: TRPA_CYAP4 (Tryptophan synthase alpha chain OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=trpA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.774e-19
Identity = 43/83 (51.81%), Postives = 58/83 (69.88%), Query Frame = 2
Query:    2 EALKLLDSCGSDIIELSVPYSDPLTDGPDMQAAATRS*ARGTNWNAILSMLKEEVPQMLCPMASFTYYKPILRRGVDNFMSTV 250
            +AL++LD  G+D+IEL VPYSDPL DGP +QAAATR+  +GT  +A+L M+    P +  P+  FTYY PI  RGV+ F+  V
Sbjct:   35 KALQVLDQQGADLIELGVPYSDPLADGPTIQAAATRALQKGTRLDAVLEMISHVAPNLRSPLILFTYYNPIFHRGVEPFLQQV 117          
BLAST of CX288998 vs. ExPASy Swiss-Prot
Match: TRPA_CYAP8 (Tryptophan synthase alpha chain OS=Cyanothece sp. (strain PCC 8801) GN=trpA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.541e-19
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 2
Query:    2 EALKLLDSCGSDIIELSVPYSDPLTDGPDMQAAATRS*ARGTNWNAILSMLKEEVPQMLCPMASFTYYKPILRRGVDNFMSTV 250
            +AL+LLD+ G+D+IEL VPYSDPL DGP +QAAATR+  RG     +L ++KE  P++  P+  FTYY PI  RGV+ F+  V
Sbjct:   35 KALRLLDASGADLIELGVPYSDPLADGPVIQAAATRALGRGVKLEDVLGVVKEVSPEIKAPIILFTYYNPIFYRGVEAFLQQV 117          
BLAST of CX288998 vs. ExPASy Swiss-Prot
Match: TRPA_SYNP2 (Tryptophan synthase alpha chain OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=trpA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.848e-19
Identity = 43/83 (51.81%), Postives = 59/83 (71.08%), Query Frame = 2
Query:    2 EALKLLDSCGSDIIELSVPYSDPLTDGPDMQAAATRS*ARGTNWNAILSMLKEEVPQMLCPMASFTYYKPILRRGVDNFMSTV 250
            +ALK+LD+ G+D IEL VPYSDPL DGP +QAAATR+ +RG     +L++++    Q+  P+  FTYY PI  RG+D FM+ V
Sbjct:   35 QALKILDAAGADFIELGVPYSDPLADGPTIQAAATRALSRGVTLEQVLAIVQRVHGQLTAPIILFTYYNPIFYRGIDAFMAQV 117          
BLAST of CX288998 vs. ExPASy Swiss-Prot
Match: TRPA_ACAM1 (Tryptophan synthase alpha chain OS=Acaryochloris marina (strain MBIC 11017) GN=trpA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.742e-18
Identity = 43/82 (52.44%), Postives = 57/82 (69.51%), Query Frame = 2
Query:    5 ALKLLDSCGSDIIELSVPYSDPLTDGPDMQAAATRS*ARGTNWNAILSMLKEEVPQMLCPMASFTYYKPILRRGVDNFMSTV 250
            AL+ LD+ G+D+IEL VPYSDPL DGP +QAAATR+  RGT  + +L M+ E  P++  P+  FTYY PI  RGV  F+  +
Sbjct:   36 ALRQLDASGADLIELGVPYSDPLADGPVIQAAATRALQRGTRLDQVLEMVTELSPEIRAPIILFTYYNPIYHRGVAEFLQQI 117          
BLAST of CX288998 vs. ExPASy Swiss-Prot
Match: TRPA_MAIZE (Indole-3-glycerol phosphate lyase, chloroplastic OS=Zea mays GN=BX1 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 4.888e-18
Identity = 40/76 (52.63%), Postives = 55/76 (72.37%), Query Frame = 2
Query:    2 EALKLLDSCGSDIIELSVPYSDPLTDGPDMQAAATRS*ARGTNWNAILSMLKEEVPQMLCPMASFTYYKPILRRGV 229
            EAL+LLD CG+D+IEL VP SDP  DGP +QA+  R+ A GT  +A+L ML+E  P++ CP+   +YYKPI+ R +
Sbjct:  121 EALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIMSRSL 196          
BLAST of CX288998 vs. ExPASy Swiss-Prot
Match: TRPA_THEEB (Tryptophan synthase alpha chain OS=Thermosynechococcus elongatus (strain BP-1) GN=trpA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.384e-18
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = 2
Query:    5 ALKLLDSCGSDIIELSVPYSDPLTDGPDMQAAATRS*ARGTNWNAILSMLKEEVPQMLCPMASFTYYKPILRRGVDNFMSTV 250
            ALK+LD  G+D+IEL +PYSDPL DGP +QAAATR+  RGT   A+L M  +   Q+  P+  F+YY PI  RGV +F+  V
Sbjct:   38 ALKILDDHGADLIELGMPYSDPLADGPVIQAAATRALQRGTRLEAVLEMTTDLHQQLTAPLILFSYYNPIYHRGVSSFLKAV 119          
BLAST of CX288998 vs. ExPASy Swiss-Prot
Match: TRPA_PORYE (Tryptophan synthase alpha chain OS=Porphyra yezoensis GN=trpA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.404e-17
Identity = 41/83 (49.40%), Postives = 58/83 (69.88%), Query Frame = 2
Query:    2 EALKLLDSCGSDIIELSVPYSDPLTDGPDMQAAATRS*ARGTNWNAILSMLKEEVPQMLCPMASFTYYKPILRRGVDNFMSTV 250
            +AL++LDS G+DIIEL +PYSDPL DGP +Q A+ R+  +G N N ILSM+K     +  P+  FTYY P+L  G++NF+  +
Sbjct:   33 KALQILDSYGADIIELGLPYSDPLADGPIIQEASNRALKQGINLNKILSMVKTVNMTIKAPIVLFTYYNPVLHLGINNFIYAI 115          
BLAST of CX288998 vs. ExPASy Swiss-Prot
Match: TRPA_PORPU (Tryptophan synthase alpha chain OS=Porphyra purpurea GN=trpA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.404e-17
Identity = 40/83 (48.19%), Postives = 58/83 (69.88%), Query Frame = 2
Query:    2 EALKLLDSCGSDIIELSVPYSDPLTDGPDMQAAATRS*ARGTNWNAILSMLKEEVPQMLCPMASFTYYKPILRRGVDNFMSTV 250
            +ALK+LD  G+DIIEL +PYSDPL DGP +QAA++R+  +  N N IL M+      ++ P+  FTYY P+L  G++NF+S +
Sbjct:   43 KALKILDQHGADIIELGLPYSDPLADGPIIQAASSRALKQSINLNNILDMVNITSSNIVAPIVLFTYYNPVLNLGINNFISAI 125          
The following BLAST results are available for this feature:
BLAST of CX288998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
TRPA_ANAVT1.052e-2057.32Tryptophan synthase alpha chain OS=Anabaena variab... [more]
TRPA_TRIEI4.421e-1951.16Tryptophan synthase alpha chain OS=Trichodesmium e... [more]
TRPA_CYAP45.774e-1951.81Tryptophan synthase alpha chain OS=Cyanothece sp. ... [more]
TRPA_CYAP87.541e-1953.01Tryptophan synthase alpha chain OS=Cyanothece sp. ... [more]
TRPA_SYNP29.848e-1951.81Tryptophan synthase alpha chain OS=Synechococcus s... [more]
TRPA_ACAM13.742e-1852.44Tryptophan synthase alpha chain OS=Acaryochloris m... [more]
TRPA_MAIZE4.888e-1852.63Indole-3-glycerol phosphate lyase, chloroplastic O... [more]
TRPA_THEEB6.384e-1852.44Tryptophan synthase alpha chain OS=Thermosynechoco... [more]
TRPA_PORYE5.404e-1749.40Tryptophan synthase alpha chain OS=Porphyra yezoen... [more]
TRPA_PORPU5.404e-1748.19Tryptophan synthase alpha chain OS=Porphyra purpur... [more]

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Properties
Property NameValue
Genbank descriptionC02007H01SK IF1 Citrus clementina cDNA clone C02007H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288998 ID=CX288998; Name=CX288998; organism=Citrus clementina; type=EST; length=267bp
AGAAGCGTTGAAGTTGCTTGACTCTTGTGGATCAGACATAATTGAACTGA
GTGTTCCATATTCAGATCCTTTAACAGATGGCCCAGACATGCAAGCTGCG
GCTACACGATCATGAGCACGAGGAACCAACTGGAATGCAATTCTTTCTAT
GTTGAAAGAGGAGGTTCCTCAAATGTTGTGCCCAATGGCTTCATTTACAT
ATTACAAACCAATTCTGAGGCGAGGCGTTGATAATTTCATGTCCACAGTG
TGAGACATTGAAATGCC
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