CX289034

Overview
NameCX289034
Unique NameCX289034
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length385
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig171 contig Ccv1_Contig171:1..385. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289034 vs. ExPASy Swiss-Prot
Match: ERECT_ARATH (LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 6.509e-47
Identity = 92/128 (71.88%), Postives = 96/128 (75.00%), Query Frame = 1
Query:    1 GLCGYWLHSACRDSHPTERVTISKXXXXXXXXXXXXXXXXXXXXXCRPHNPTHFPDGSLDKPVNYSTPKLVILHMNMALHVYEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQ 384
            GLCG WL+S C DS  T RV+IS+                     CRPHNP  F DGSLDKPV YSTPKLVILHMNMALHVYEDIMRMTENLSEKYIIG+GASSTVYKCVLKNCKPVAIKRLYSH PQ
Sbjct:  557 GLCGSWLNSPCHDSRRTVRVSISRAAILGIAIGGLVILLMVLIAACRPHNPPPFLDGSLDKPVTYSTPKLVILHMNMALHVYEDIMRMTENLSEKYIIGHGASSTVYKCVLKNCKPVAIKRLYSHNPQ 684          
BLAST of CX289034 vs. ExPASy Swiss-Prot
Match: ERL2_ARATH (LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.754e-21
Identity = 55/126 (43.65%), Postives = 71/126 (56.35%), Query Frame = 1
Query:    4 LCGYWLHSACRDSHPTERVTISKXXXXXXXXXXXXXXXXXXXXXCRPHNPTHFPDGSLDKPVNYSTPKLVILHMNMALHVYEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYP 381
            LCG W+ S C  S P  +V  ++                      +         GS  +P    + KLVILHM+MA+H ++DIMR+TENL EKYIIGYGASSTVYKC  K  +P+AIKR+Y+ YP
Sbjct:  564 LCGNWVGSICGPSLPKSQV-FTRVAVICMVLGFITLICMIFIAVYKSKQQKPVLKGSSKQPEG--STKLVILHMDMAIHTFDDIMRVTENLDEKYIIGYGASSTVYKCTSKTSRPIAIKRIYNQYP 686          
BLAST of CX289034 vs. ExPASy Swiss-Prot
Match: ERL1_ARATH (LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.597e-21
Identity = 44/59 (74.58%), Postives = 55/59 (93.22%), Query Frame = 1
Query:  205 KLVILHMNMALHVYEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYP 381
            KLVILHM+MA+H ++DIMR+TENL+EK+IIGYGASSTVYKC LK+ +P+AIKRLY+ YP
Sbjct:  625 KLVILHMDMAIHTFDDIMRVTENLNEKFIIGYGASSTVYKCALKSSRPIAIKRLYNQYP 683          
The following BLAST results are available for this feature:
BLAST of CX289034 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ERECT_ARATH6.509e-4771.88LRR receptor-like serine/threonine-protein kinase ... [more]
ERL2_ARATH2.754e-2143.65LRR receptor-like serine/threonine-protein kinase ... [more]
ERL1_ARATH3.597e-2174.58LRR receptor-like serine/threonine-protein kinase ... [more]
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Properties
Property NameValue
Genbank descriptionC02008C12SK IF1 Citrus clementina cDNA clone C02008C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289034 ID=CX289034; Name=CX289034; organism=Citrus clementina; type=EST; length=385bp
GGTCTTTGCGGCTATTGGCTCCATTCTGCATGCCGTGATTCTCATCCAAC
GGAACGAGTTACAATTTCTAAAGCAGCTATTCTCGGAATTGCTCTCGGTG
CACTTGTAATTCTTCTCATGATCCTGGTGGCAGCATGCCGACCACACAAT
CCTACTCATTTTCCAGATGGATCACTTGACAAACCAGTTAATTACTCCAC
TCCCAAGTTAGTGATCCTTCACATGAACATGGCACTTCATGTGTATGAAG
ACATTATGAGGATGACCGAGAATTTGAGTGAGAAGTACATAATTGGTTAT
GGGGCATCGAGTACAGTGTACAAGTGTGTTCTTAAAAATTGTAAGCCAGT
GGCTATCAAGCGACTTTACTCTCACTATCCACAGT
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