CX289041

Overview
NameCX289041
Unique NameCX289041
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length403
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1390 contig Ccv1_Contig1390:88..490. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289041 vs. ExPASy Swiss-Prot
Match: ARNA_KLEP3 (Bifunctional polymyxin resistance protein arnA OS=Klebsiella pneumoniae (strain 342) GN=arnA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.887e-19
Identity = 48/135 (35.56%), Postives = 77/135 (57.04%), Query Frame = 2
Query:    5 NLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENP-ARANGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 400
            NL+   P+KL++GG+ +R F  I D IEA+  +IEN   R +G I N+GNP NE ++++LAEM+   + +  +           +V S ++YG+GY D + R P +    + L W PK  + + +E TL +  RT
Sbjct:  518 NLVEGSPIKLIEGGKQKRCFTDISDGIEALFRIIENKDGRCDGQIINIGNPENEASIKELAEMLLACFERHPLRDRFPPFAGFREVESSDYYGKGYQDVEHRKPSIRNAKRCLNWEPKVEMEETVEHTLDFFLRT 652          
BLAST of CX289041 vs. ExPASy Swiss-Prot
Match: ARNA_KLEP7 (Bifunctional polymyxin resistance protein arnA OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=arnA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.291e-18
Identity = 48/135 (35.56%), Postives = 77/135 (57.04%), Query Frame = 2
Query:    5 NLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENP-ARANGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 400
            NL+   P+KL++GG+ +R F  I D IEA+  +IEN   R +G I N+GNP NE ++++LAEM+   + +  +           +V S ++YG+GY D + R P +    + L W PK  + + +E TL +  RT
Sbjct:  518 NLVEGSPIKLIEGGKQKRCFTDISDGIEALFRIIENKDGRCDGQIINIGNPDNEASIKELAEMLLACFERHPLRDRFPPFAGFREVESSDYYGKGYQDVEHRKPSIRNAKRCLNWEPKVEMEETVEHTLDFFLRT 652          
BLAST of CX289041 vs. ExPASy Swiss-Prot
Match: ARNA_PROMH (Bifunctional polymyxin resistance protein arnA OS=Proteus mirabilis (strain HI4320) GN=arnA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.757e-18
Identity = 48/131 (36.64%), Postives = 72/131 (54.96%), Query Frame = 2
Query:    5 NLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 388
            NL+   P+KLVDGG+ +R F  I D IEA+  +IEN   + +G I N+GNP NE ++R+LAEM+ + + K  + G          + S  +YG+GY D + R P +    + L W P       +E TL +
Sbjct:  518 NLVEGSPIKLVDGGEQKRCFTDINDGIEALFRIIENRDNKCDGQIINIGNPTNEASIRELAEMLLDCFEKHELRGHFPPFAGFKKIESSSYYGKGYQDVEHRKPSIKNAERLLDWKPTIETRQTVEETLDF 648          
BLAST of CX289041 vs. ExPASy Swiss-Prot
Match: ARNA_ERWT9 (Bifunctional polymyxin resistance protein arnA OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=arnA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.757e-18
Identity = 47/131 (35.88%), Postives = 74/131 (56.49%), Query Frame = 2
Query:    5 NLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPAR-ANGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 388
            NL+   P+KL+DGG+ +R F  I D IEA+ L+IEN  +  +G I N+GNP NE +++QLAE + E + +  +           +V S  +YG+GY D + R P +    Q L W P  ++   ++ TL +
Sbjct:  518 NLVEGSPIKLIDGGRQKRCFTDIHDGIEALFLIIENKQKNCDGQIINIGNPENEASIKQLAEQLLESFERHPLRDRFPPFAGFREVESSTYYGKGYQDVEHRKPSIRNAKQLLNWQPTIAMDKTIDDTLDF 648          
BLAST of CX289041 vs. ExPASy Swiss-Prot
Match: ARNA_ERWCT (Bifunctional polymyxin resistance protein arnA OS=Erwinia carotovora subsp. atroseptica GN=arnA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.757e-18
Identity = 50/135 (37.04%), Postives = 71/135 (52.59%), Query Frame = 2
Query:    5 NLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVY--AKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 400
            NL+   P+KLVDGG  +R F  I D IEA+  +IEN   + +G I N+GNPHNE ++R+L EM+   +    +          +DV S  +YG+GY D   R P +    + L W P   +   +  TL Y  RT
Sbjct:  525 NLVEGSPIKLVDGGAQKRCFTDIHDGIEALFRVIENRNGQCDGQIINIGNPHNEASIRELGEMLLTSFNAHPLRDRFPPFAGFIDVESSSYYGKGYQDVAHRTPSIRNAKRLLEWEPTVKMEQTVAETLDYFLRT 659          
BLAST of CX289041 vs. ExPASy Swiss-Prot
Match: ARNA_YERE8 (Bifunctional polymyxin resistance protein arnA OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=arnA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.409e-18
Identity = 50/133 (37.59%), Postives = 73/133 (54.89%), Query Frame = 2
Query:    5 NLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTV----DVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 388
            NL+   P+KLVDGG+ +R F  I D IEA+  +IEN     +G I N+GNP NE ++R+LAEM+   + K   E     P      D+ S  +YG+GY D + R P +    + L W P+ +L   +  TL +
Sbjct:  518 NLVEGSPIKLVDGGEQKRCFTDIHDGIEALFRIIENRDGACDGQIINIGNPTNEASIRELAEMLLRCFEK--HELRHNFPPFAGFKDIESSAYYGKGYQDVEYRTPSIRNARRILDWQPEIALEQTVMETLDF 648          
BLAST of CX289041 vs. ExPASy Swiss-Prot
Match: ARNA_SHIDS (Bifunctional polymyxin resistance protein arnA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=arnA PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 6.409e-18
Identity = 49/142 (34.51%), Postives = 77/142 (54.23%), Query Frame = 2
Query:    5 NLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 400
            NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +   ++ L W PK  + + ++ TL +  RT
Sbjct:  518 NLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRT 652          
BLAST of CX289041 vs. ExPASy Swiss-Prot
Match: ARNA_SHIBS (Bifunctional polymyxin resistance protein arnA OS=Shigella boydii serotype 4 (strain Sb227) GN=arnA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.409e-18
Identity = 49/142 (34.51%), Postives = 77/142 (54.23%), Query Frame = 2
Query:    5 NLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 400
            NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +   ++ L W PK  + + ++ TL +  RT
Sbjct:  518 NLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRT 652          
BLAST of CX289041 vs. ExPASy Swiss-Prot
Match: ARNA_ECOUT (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain UTI89 / UPEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.409e-18
Identity = 49/142 (34.51%), Postives = 76/142 (53.52%), Query Frame = 2
Query:    5 NLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 400
            NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +    + L W PK  + + ++ TL +  RT
Sbjct:  518 NLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHYFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNARRCLNWEPKIDMQETIDETLDFFLRT 652          
BLAST of CX289041 vs. ExPASy Swiss-Prot
Match: ARNA_ECOSE (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain SE11) GN=arnA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.409e-18
Identity = 49/142 (34.51%), Postives = 77/142 (54.23%), Query Frame = 2
Query:    5 NLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 400
            NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +   ++ L W PK  + + ++ TL +  RT
Sbjct:  518 NLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRT 652          
The following BLAST results are available for this feature:
BLAST of CX289041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ARNA_KLEP39.887e-1935.56Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_KLEP71.291e-1835.56Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PROMH3.757e-1836.64Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ERWT93.757e-1835.88Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ERWCT3.757e-1837.04Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERE86.409e-1837.59Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SHIDS6.409e-1834.51Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SHIBS6.409e-1834.51Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOUT6.409e-1834.51Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOSE6.409e-1834.51Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionC02008D08SK IF1 Citrus clementina cDNA clone C02008D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289041 ID=CX289041; Name=CX289041; organism=Citrus clementina; type=EST; length=403bp
TAACAATCTCCTTCGCCGGCAACCACTCAAGCTTGTCGACGGTGGCCAAT
CTCAGAGGACTTTTATTTACATAAAGGATGCTATTGAAGCTGTTCTATTA
ATGATTGAAAATCCAGCAAGGGCCAATGGTCATATTTTCAATGTGGGCAA
CCCCCACAATGAAGTTACAGTTCGACAGCTTGCTGAGATGATGACTGAGG
TGTATGCAAAGGTGAGTGGAGAGGCTGCTTTGGAGGAGCCAACAGTTGAT
GTCAGCTCCAAAGAATTTTATGGTGAAGGATATGATGATAGTGACAAGAG
AATTCCAGACATGACCATTATAAATCAACAGCTTGGTTGGAACCCGAAGA
CATCACTTTGGGACTTGCTTGAATCAACCCTTACCTATCAGCACAGGACA
TAT
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