CX289050
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX289050 vs. ExPASy Swiss-Prot
Match: YTX2_XENLA (Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis PE=4 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 9.775e-18 Identity = 56/190 (29.47%), Postives = 91/190 (47.89%), Query Frame = -2 Query: 27 GN*IEEAGEIANQFCEYFAALFSTSSPTKDQMEDALRGLKPKVSPEMNAYMS*PYTEEEITEALAQMCPTKAPGPDGLPAAFYQKHWKSVKEGVISTCLHILNNSGTIAPLNHTYIALIPKCAKPRKVTEFRPISLYNVIYRIIAKTVAKRLKTILHNVIDASQSAFIPNRLITDNIIVGYECLHKIRHS 596 G +E+ I ++ ++ LFS + D E+ GL P VS + P T +E+++AL M K+PG DGL F+Q W ++ ++L+PK R + +RP+SL + Y+I+AK ++ RLK++L VI QS +P R I DN+ + + LH R + Sbjct: 396 GTPLEDPEAIRDRARSFYQNLFSPDPISPDACEELWDGL-PVVSERRKERLETPITLDELSQALRLMPHNKSPGLDGLTIEFFQFFWDTLGPDFHRVLTEAFKKGELPLSCRRAVLSLLPKKGDLRLIKNWRPVSLLSTDYKIVAKAISLRLKSVLAEVIHPDQSYTVPGRTIFDNVFLIRDLLHFARRT 584
BLAST of CX289050 vs. ExPASy Swiss-Prot
Match: POL2_MOUSE (Retrovirus-related Pol polyprotein LINE-1 OS=Mus musculus GN=Pol PE=1 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 7.006e-16 Identity = 63/208 (30.29%), Postives = 99/208 (47.60%), Query Frame = -2 Query: 3 IEDAHGN*IEEAGEIANQFCEYFAALFSTSSPTKDQMEDAL-RGLKPKVSPEMNAYMS*PYTEEEITEALAQMCPTKAPGPDGLPAAFYQKHWKSVKEGVISTCLHILNNSGTIAPLNHTY---IALIPKCAK-PRKVTEFRPISLYNVIYRIIAKTVAKRLKTILHNVIDASQSAFIPNRLITDNIIVGYECLHKIRHSKGKKKGLV 611 I + G+ + EI N ++ L+ST D+M+ L R PK++ + +++ P + +EI + + K+PGPDG A FYQ +K ++ H + GT+ N Y I LIPK K P K+ FRPISL N+ +I+ K +A R++ + +I Q FIP NI +H I K K ++ Sbjct: 400 IRNEKGDITTDPEEIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDHLNSPISPKEIEAVINSLPTKKSPGPDGFSAEFYQT-FKEDLIPILHKLFHKIEVEGTLP--NSFYEATITLIPKPQKDPTKIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHYINKLKDKNHMII 604
BLAST of CX289050 vs. ExPASy Swiss-Prot
Match: LIN1_NYCCO (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 8.015e-12 Identity = 53/194 (27.32%), Postives = 87/194 (44.85%), Query Frame = -2 Query: 18 EAGEIANQFCEYFAALFSTSSPTKDQMEDALRGLK-PKVSPEMNAYMS*PYTEEEITEALAQMCPTKAPGPDGLPAAFYQKHWKSVKEGVISTCLHILNNSGTIAPLNHTY----IALIPKCAK-PRKVTEFRPISLYNVIYRIIAKTVAKRLKTILHNVIDASQSAFIPNRLITDNIIVGYECLHKIRHSKGK 581 + EI EY+ L+S +++ L P++S + ++ P + EI + + K+PGPDG + FYQ + KE ++ L++ N L +T+ I LIPK K P + +RPISL N+ +I+ K + R++ + +I Q FIP NI + I K K Sbjct: 402 DPSEIQKILNEYYKKLYSHKYENLKEIDQYLEACHLPRLSQKEVEMLNRPISSSEIASTIQNLPKKKSPGPDGFTSEFYQ----TFKEELVPILLNLFQNIEKEGILPNTFYEANITLIPKPGKDPTRKENYRPISLMNIDAKILNKILTNRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINVIQHINKLKNK 591 The following BLAST results are available for this feature:
BLAST of CX289050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 3
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX289050 ID=CX289050; Name=CX289050; organism=Citrus clementina; type=EST; length=627bpback to top |