CX289054

Overview
NameCX289054
Unique NameCX289054
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length474
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15100 contig Ccv1_Contig15100:515..988. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289054 vs. ExPASy Swiss-Prot
Match: PYRC_ARATH (Dihydroorotase, mitochondrial OS=Arabidopsis thaliana GN=PYR4 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 3.511e-64
Identity = 105/134 (78.36%), Postives = 126/134 (94.03%), Query Frame = 1
Query:   73 SHYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDKTSPDEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQ 474
            S++ RAIVMPNLKPP+T+TAAA+ YR+ I+KALP+ S+F PLMTLYLTDKT P+EI+LAR++GVV+AVKLYPAGATTNSQDGVTDLFGKC+ VLEEMV+QNMPLLVHGEVTDP +D+FDREK+FI+T+LQPLIQ
Sbjct:   62 SNFKRAIVMPNLKPPVTSTAAAIIYRKFIMKALPSESSFDPLMTLYLTDKTLPEEIRLARESGVVYAVKLYPAGATTNSQDGVTDLFGKCLPVLEEMVKQNMPLLVHGEVTDPSIDVFDREKIFIETVLQPLIQ 195          

HSP 2 Score: 42.3578 bits (98), Expect = 3.511e-64
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = 2
Query:    5 KGIIMELTLTQPDDWHLHLRD 67
            + + MELT+TQPDDWHLHLRD
Sbjct:   29 RAVRMELTITQPDDWHLHLRD 49          
BLAST of CX289054 vs. ExPASy Swiss-Prot
Match: PYRC_RALSO (Dihydroorotase OS=Ralstonia solanacearum GN=pyrC PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 3.966e-50
Identity = 91/130 (70.00%), Postives = 104/130 (80.00%), Query Frame = 1
Query:   79 YGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDKTSPDEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPL 468
            +GRAI+MPNLKPP+TTTA A AYRE IL ALPA + F PLMTLYLTD T+P+E++ AR +G V  VKLYPAGATTNS  GVTDL  +C   LE M +  MPLLVHGEVTDP VDIFDRE VFIDT++QPL
Sbjct:   34 FGRAIIMPNLKPPVTTTAQARAYRERILAALPAGTRFEPLMTLYLTDNTTPEEVRAARASGFVHGVKLYPAGATTNSDAGVTDL-RRCAKTLEAMQDVGMPLLVHGEVTDPTVDIFDREAVFIDTVMQPL 162          

HSP 2 Score: 34.6538 bits (78), Expect = 3.966e-50
Identity = 13/19 (68.42%), Postives = 16/19 (84.21%), Query Frame = 2
Query:   11 IIMELTLTQPDDWHLHLRD 67
            +I  LT+ +PDDWHLHLRD
Sbjct:    1 MIDTLTIVRPDDWHLHLRD 19          
BLAST of CX289054 vs. ExPASy Swiss-Prot
Match: PYRC_RALPJ (Dihydroorotase OS=Ralstonia pickettii (strain 12J) GN=pyrC PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 7.316e-49
Identity = 91/130 (70.00%), Postives = 102/130 (78.46%), Query Frame = 1
Query:   79 YGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDKTSPDEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPL 468
            +GRAI+MPNLKPP+TTTA A AYRE IL ALPA + F PLMTLYLTD TSP+ I+ AR +G +  VKLYPAGATTNS  GVTDL  +C   LE M E  MPLLVHGEVTDP VDIFDRE VFIDT++ PL
Sbjct:   34 FGRAIIMPNLKPPVTTTAQARAYRERILAALPAGTQFEPLMTLYLTDNTSPEVIREARASGFIHGVKLYPAGATTNSDAGVTDL-RRCAKTLEAMQEVGMPLLVHGEVTDPTVDIFDREAVFIDTVMLPL 162          

HSP 2 Score: 34.2686 bits (77), Expect = 7.316e-49
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 2
Query:   23 LTLTQPDDWHLHLRD 67
            LT+ +PDDWHLHLRD
Sbjct:    5 LTIVRPDDWHLHLRD 19          
BLAST of CX289054 vs. ExPASy Swiss-Prot
Match: PYRC_METFK (Dihydroorotase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=pyrC PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 7.171e-46
Identity = 83/132 (62.88%), Postives = 103/132 (78.03%), Query Frame = 1
Query:   79 YGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDKTSPDEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQ 474
            +GRAIVMPNL+PP+TTTA A AYRE I++A+PA S F PLMTLYLTD TS +EI  A+ +G+V  VKLYPAGATTNS  GVT++ G CV  LE M +  +PLLVH EVTD  VD+FDRE+VFI+  + PL++
Sbjct:   34 FGRAIVMPNLRPPVTTTALAYAYRERIMQAMPAGSGFEPLMTLYLTDNTSAEEIDRAKASGIVHGVKLYPAGATTNSDSGVTNI-GHCVKALEAMEKHGIPLLVHAEVTDVDVDVFDRERVFIERNMVPLLE 164          

HSP 2 Score: 35.4242 bits (80), Expect = 7.171e-46
Identity = 12/15 (80.00%), Postives = 15/15 (100.00%), Query Frame = 2
Query:   23 LTLTQPDDWHLHLRD 67
            +T+T+PDDWHLHLRD
Sbjct:    5 ITITRPDDWHLHLRD 19          
BLAST of CX289054 vs. ExPASy Swiss-Prot
Match: PYRC_NITEU (Dihydroorotase OS=Nitrosomonas europaea GN=pyrC PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 9.345e-46
Identity = 85/134 (63.43%), Postives = 102/134 (76.12%), Query Frame = 1
Query:   79 YGRAIVMPNLKPPITTTAAAVAYRESILKALPA--SSNFTPLMTLYLTDKTSPDEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQ 474
            + RAI+MPNLKPPI TT  A AYR  IL ALPA  +  F PLMTLYLTD TSP+EI  A+ +G+V  +KLYPAGATT+S  GVTD+  +C   LE+M E +MPLLVHGEV DP VD+FDREK+FID +L PL+Q
Sbjct:   37 FARAIIMPNLKPPIVTTEQAAAYRVRILSALPAELAGRFEPLMTLYLTDTTSPEEITRAQASGIVQGIKLYPAGATTHSDAGVTDI-ARCEATLEKMEELDMPLLVHGEVVDPAVDVFDREKIFIDRVLTPLLQ 169          

HSP 2 Score: 35.8094 bits (81), Expect = 9.345e-46
Identity = 13/16 (81.25%), Postives = 15/16 (93.75%), Query Frame = 2
Query:   20 ELTLTQPDDWHLHLRD 67
            +LT T+PDDWHLHLRD
Sbjct:    7 KLTFTRPDDWHLHLRD 22          
BLAST of CX289054 vs. ExPASy Swiss-Prot
Match: PYRC_CUPTR (Dihydroorotase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=pyrC PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.587e-45
Identity = 84/130 (64.62%), Postives = 95/130 (73.08%), Query Frame = 1
Query:   79 YGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDKTSPDEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPL 468
            + RAIVMPNLKPP+TT A A AYR  IL ALPA   F PLMTLYLTD T P+EI  AR +G V  VKLYPAGATTNS  GVTD+  +C   LE M    +PLLVHGEVTDP +DIFDRE VFI+ ++ PL
Sbjct:   34 FARAIVMPNLKPPVTTVAQAQAYRARILAALPAGMQFEPLMTLYLTDNTGPEEIAAARASGFVHGVKLYPAGATTNSDAGVTDI-RRCYPALEAMQRAGLPLLVHGEVTDPAIDIFDREAVFIERVMTPL 162          

HSP 2 Score: 36.5798 bits (83), Expect = 1.587e-45
Identity = 13/16 (81.25%), Postives = 16/16 (100.00%), Query Frame = 2
Query:   20 ELTLTQPDDWHLHLRD 67
            +LT+T+PDDWHLHLRD
Sbjct:    4 KLTITRPDDWHLHLRD 19          
BLAST of CX289054 vs. ExPASy Swiss-Prot
Match: PYRC_ALHEH (Dihydroorotase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=pyrC PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.696e-45
Identity = 85/132 (64.39%), Postives = 97/132 (73.48%), Query Frame = 1
Query:   79 YGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDKTSPDEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQ 474
            +GRAI+MPNLKPP+TT   A AYRE IL ALPA ++F PLMTLYLTD T P EI+ A  +G V AVKLYPAGATTNS  GVTDL  +C   L  M E+ +PL VHGEVT   VDIFDRE  FID +L PL+Q
Sbjct:   33 FGRAIIMPNLKPPVTTVDQAAAYRERILAALPAGAHFEPLMTLYLTDNTPPAEIEKAAASGFVHAVKLYPAGATTNSDAGVTDL-ARCEETLAAMAERGLPLCVHGEVTRDEVDIFDREAHFIDEVLDPLVQ 163          

HSP 2 Score: 36.5798 bits (83), Expect = 2.696e-45
Identity = 13/18 (72.22%), Postives = 16/18 (88.89%), Query Frame = 2
Query:   14 IMELTLTQPDDWHLHLRD 67
            +  +TLT+PDDWHLHLRD
Sbjct:    1 MQRITLTRPDDWHLHLRD 18          
BLAST of CX289054 vs. ExPASy Swiss-Prot
Match: PYRC_AGRT5 (Dihydroorotase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=pyrC PE=3 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 3.513e-45
Identity = 83/133 (62.41%), Postives = 100/133 (75.19%), Query Frame = 1
Query:   76 HYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDKTSPDEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQ 474
            H+ RAI+MPNL PP+ TTA A AYRE ILKA+P    F PLMTLYLT+ T  D+++  +K+G++ AVKLYPAGATTNS  GV D F K + VLE M +  +PL VHGEVT P VDIFDREK FIDT+L+PL Q
Sbjct:   32 HFARAIIMPNLVPPVVTTADASAYRERILKAIPEGDRFEPLMTLYLTEDTVADDVEEGKKSGLITAVKLYPAGATTNSHGGVRD-FNKAMPVLERMAKIGLPLCVHGEVTTPDVDIFDREKAFIDTVLEPLRQ 163          

HSP 2 Score: 34.6538 bits (78), Expect = 3.513e-45
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 2
Query:   23 LTLTQPDDWHLHLRD 67
            LTL +PDDWHLHLRD
Sbjct:    4 LTLRRPDDWHLHLRD 18          
BLAST of CX289054 vs. ExPASy Swiss-Prot
Match: PYRC_AGRRK (Dihydroorotase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=pyrC PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.513e-45
Identity = 83/133 (62.41%), Postives = 101/133 (75.94%), Query Frame = 1
Query:   76 HYGRAIVMPNLKPPITTTAAAVAYRESILKALPASSNFTPLMTLYLTDKTSPDEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLIQ 474
            H+ RAI+MPNL PP+ TTA A AYRE ILKALPA   F PLMTLYLT+ T+PD+++  +K+G++ AVKLYPAGATTNS  GV +L  K +  LE M +  +PL VHGEVT P VDIFDRE VFI+T+L PL Q
Sbjct:   32 HFARAIIMPNLVPPVVTTADATAYRERILKALPAGDRFQPLMTLYLTEHTNPDDVEEGKKSGLITAVKLYPAGATTNSHGGVRNL-DKAMPTLERMAKIGLPLCVHGEVTTPEVDIFDREAVFIETVLDPLRQ 163          

HSP 2 Score: 34.6538 bits (78), Expect = 3.513e-45
Identity = 12/18 (66.67%), Postives = 16/18 (88.89%), Query Frame = 2
Query:   14 IMELTLTQPDDWHLHLRD 67
            + +LT+ +PDDWHLHLRD
Sbjct:    1 MQKLTIRRPDDWHLHLRD 18          
BLAST of CX289054 vs. ExPASy Swiss-Prot
Match: PYRC_LARHH (Dihydroorotase OS=Laribacter hongkongensis (strain HLHK9) GN=pyrC PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.013e-44
Identity = 85/132 (64.39%), Postives = 96/132 (72.73%), Query Frame = 1
Query:   79 YGRAIVMPNLKPPITTTAAAVAYRESILKALPASSN-FTPLMTLYLTDKTSPDEIKLARKTGVVFAVKLYPAGATTNSQDGVTDLFGKCVHVLEEMVEQNMPLLVHGEVTDPIVDIFDREKVFIDTILQPLI 471
            + RAIVMPNLKPP+TT   A AYRE IL ALP     F PLMTLYLTD T P EI    ++G V A+KLYPAGATTNS  GVT L G C+  L  M E  +PLLVHGEVTDP +D+FDRE VFIDT+LQPL+
Sbjct:   33 FARAIVMPNLKPPVTTVVQAAAYRERILAALPPGGPAFEPLMTLYLTDNTPPAEIDRVAESGFVHALKLYPAGATTNSDAGVTSLSG-CLPTLTRMAELGVPLLVHGEVTDPQIDVFDREAVFIDTVLQPLL 163          

HSP 2 Score: 36.965 bits (84), Expect = 1.013e-44
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 2
Query:   23 LTLTQPDDWHLHLRD 67
            LTLT+PDDWHLHLRD
Sbjct:    4 LTLTRPDDWHLHLRD 18          
The following BLAST results are available for this feature:
BLAST of CX289054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 196
Match NameE-valueIdentityDescription
PYRC_ARATH3.511e-6478.36Dihydroorotase, mitochondrial OS=Arabidopsis thali... [more]
PYRC_RALSO3.966e-5070.00Dihydroorotase OS=Ralstonia solanacearum GN=pyrC P... [more]
PYRC_RALPJ7.316e-4970.00Dihydroorotase OS=Ralstonia pickettii (strain 12J)... [more]
PYRC_METFK7.171e-4662.88Dihydroorotase OS=Methylobacillus flagellatus (str... [more]
PYRC_NITEU9.345e-4663.43Dihydroorotase OS=Nitrosomonas europaea GN=pyrC PE... [more]
PYRC_CUPTR1.587e-4564.62Dihydroorotase OS=Cupriavidus taiwanensis (strain ... [more]
PYRC_ALHEH2.696e-4564.39Dihydroorotase OS=Alkalilimnicola ehrlichei (strai... [more]
PYRC_AGRT53.513e-4562.41Dihydroorotase OS=Agrobacterium tumefaciens (strai... [more]
PYRC_AGRRK3.513e-4562.41Dihydroorotase OS=Agrobacterium radiobacter (strai... [more]
PYRC_LARHH1.013e-4464.39Dihydroorotase OS=Laribacter hongkongensis (strain... [more]

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Properties
Property NameValue
Genbank descriptionC02008E11SK IF1 Citrus clementina cDNA clone C02008E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289054 ID=CX289054; Name=CX289054; organism=Citrus clementina; type=EST; length=474bp
GTGCAAAGGAATTATAATGGAGCTCACTCTAACTCAACCTGATGATTGGC
ATCTTCACCTTCGCGATGTGTAAGTCATTATGGGAGGGCAATTGTGATGC
CGAATTTAAAACCTCCCATCACCACCACAGCTGCTGCTGTGGCCTACCGC
GAGTCCATCTTGAAAGCACTGCCTGCCAGTAGCAATTTCACTCCGCTTAT
GACACTTTATTTGACAGATAAAACAAGTCCTGATGAGATCAAGCTTGCTA
GAAAAACTGGTGTTGTATTTGCTGTGAAGTTGTACCCTGCTGGTGCCACG
ACAAATTCTCAAGACGGTGTCACAGATCTTTTTGGGAAATGTGTACATGT
CCTTGAGGAGATGGTCGAGCAGAATATGCCGTTGCTGGTTCATGGGGAGG
TTACAGATCCTATTGTTGACATTTTTGATCGTGAGAAGGTCTTCATTGAC
ACCATTTTGCAGCCTTTAATCCAA
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