CX289098

Overview
NameCX289098
Unique NameCX289098
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length412
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig920 contig Ccv1_Contig920:118..529. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289098 vs. ExPASy Swiss-Prot
Match: ATPO_IPOBA (ATP synthase subunit O, mitochondrial OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.336e-33
Identity = 78/133 (58.65%), Postives = 96/133 (72.18%), Query Frame = 2
Query:    5 RIRS-SLSVFNKIL----RSNSQLSPLHPQLS-----KGFSTSSLQKEQKVKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFL 373
            R RS   S+  K L    RSN+  S L P LS     + ++T+S  KEQK+KVPL ++G SGNYASALY+AAVK+N LEKVESE+ DLVEASKK+ T+ QF +D SVP +TRVNAI EIC QAKF D T++FL
Sbjct:    6 RARSMGFSILQKALSSAQRSNAHRSILCPTLSNSELLRNYATASASKEQKIKVPLTMYGVSGNYASALYLAAVKSNTLEKVESELYDLVEASKKSPTFSQFMRDPSVPVDTRVNAIKEICAQAKFGDTTQNFL 138          
BLAST of CX289098 vs. ExPASy Swiss-Prot
Match: ATPO_ARATH (ATP synthase subunit O, mitochondrial OS=Arabidopsis thaliana GN=At5g13450 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 2.654e-24
Identity = 62/129 (48.06%), Postives = 88/129 (68.22%), Query Frame = 2
Query:    2 SRIRSSLSVFNKILRSNSQLS----PLHPQLSKGFSTSSLQKEQKVKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLA 376
            +R RS +S F  I  ++S  S     L P L + ++T+S Q    VKVP+AL G +GN+AS LYIAAVK N+LEK+E+++ +++EA K A  + QFTKD SVP  TR+ AI + C QAKF++ TK+FL+
Sbjct:    3 NRFRSGISFFKTIAVTDSVSSVRSKSLFPAL-RTYATASAQTTANVKVPIALVGENGNFASWLYIAAVKMNSLEKIETDLSEMIEAMKTAPIFAQFTKDPSVPRGTRLAAIRDACDQAKFAEPTKNFLS 130          
The following BLAST results are available for this feature:
BLAST of CX289098 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ATPO_IPOBA5.336e-3358.65ATP synthase subunit O, mitochondrial OS=Ipomoea b... [more]
ATPO_ARATH2.654e-2448.06ATP synthase subunit O, mitochondrial OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionC02009B02SK IF1 Citrus clementina cDNA clone C02009B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289098 ID=CX289098; Name=CX289098; organism=Citrus clementina; type=EST; length=412bp
AAGTCGTATCAGATCGAGCCTCTCTGTATTCAACAAGATTCTCAGATCCA
ATTCTCAGCTATCCCCTCTTCATCCACAGTTATCGAAAGGTTTTTCCACT
TCGTCGTTGCAGAAGGAGCAGAAAGTTAAGGTGCCCCTGGCTTTGTTTGG
AGGTTCAGGAAATTATGCTTCTGCTCTGTACATTGCGGCAGTGAAAACTA
ACGCACTGGAGAAGGTTGAGTCTGAGATTCTTGACCTTGTTGAGGCTTCA
AAGAAGGCTGATACATATTTTCAGTTCACAAAGGACTTGTCTGTGCCTGC
AGAGACGAGAGTTAATGCCATTAACGAAATCTGTACTCAGGCTAAATTTT
CAGATGTTACGAAGCACTTCTTGGCCACTTCCCCCAGAAGAAGAGAAAGA
GTTGAAAGAGAC
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