CX289099

Overview
NameCX289099
Unique NameCX289099
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13865 contig Ccv1_Contig13865:86..552. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289099 vs. ExPASy Swiss-Prot
Match: ISPH_MICAN (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Microcystis aeruginosa (strain NIES-843) GN=ispH PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 6.283e-29
Identity = 53/93 (56.99%), Postives = 73/93 (78.49%), Query Frame = 2
Query:  188 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEI 466
            D K F+  L +SDNYNR+GFGHKEE ++ M  EY SD+I++++EN +    G+V + LA+++GFCWGVERAV +AYE R+ FP+E+IWITNEI
Sbjct:    2 DTKSFKRTLQQSDNYNRKGFGHKEEVMDAMTNEYQSDLIQEIRENNYRLQRGDVTIYLAQAFGFCWGVERAVAMAYETRQHFPQERIWITNEI 94          
BLAST of CX289099 vs. ExPASy Swiss-Prot
Match: ISPH_CYAA5 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain ATCC 51142) GN=ispH PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 8.205e-29
Identity = 53/93 (56.99%), Postives = 75/93 (80.65%), Query Frame = 2
Query:  188 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEI 466
            D K F+ +L +S+NY+R+GFGH+ E +  MN EY S +I+K++EN +++  G+V +KLAE++GFCWGVERAV +AYE R+ FP+EKIWITNEI
Sbjct:    2 DTKAFKRSLQQSNNYHRKGFGHETEVMGTMNTEYQSSLIQKIRENNYQWQEGDVTIKLAEAFGFCWGVERAVAMAYETRQHFPQEKIWITNEI 94          
BLAST of CX289099 vs. ExPASy Swiss-Prot
Match: ISPH_SYNP2 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ispH PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 9.072e-28
Identity = 52/93 (55.91%), Postives = 71/93 (76.34%), Query Frame = 2
Query:  188 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEI 466
            D K F+ +L  S+NY R+GFGHK+E   +M  EY S +I+++++N +E T G+V + LAE++GFCWGVERAV +AYE RK FP EKIW+TNEI
Sbjct:    2 DTKAFKRSLNHSENYYRQGFGHKDEVAGMMTSEYQSSLIQEIRDNNYELTRGDVTIYLAEAFGFCWGVERAVAMAYETRKHFPTEKIWVTNEI 94          
BLAST of CX289099 vs. ExPASy Swiss-Prot
Match: ISPH_ACAM1 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Acaryochloris marina (strain MBIC 11017) GN=ispH PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.640e-27
Identity = 49/93 (52.69%), Postives = 72/93 (77.42%), Query Frame = 2
Query:  188 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEI 466
            D K F+ +L +S+ Y+R+GFGH+EE   L+  EY S +I++++ NG+    G+V + LAE++GFCWGVERA+ +AYE R+QFP+E+IWITNEI
Sbjct:    2 DTKAFKRSLHKSEQYHRKGFGHEEEVTNLLQSEYNSKLIQQIRNNGYRLQQGDVTIHLAEAFGFCWGVERAIALAYETRRQFPQERIWITNEI 94          
BLAST of CX289099 vs. ExPASy Swiss-Prot
Match: ISPH_SYNR3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain RCC307) GN=ispH PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 6.501e-26
Identity = 50/93 (53.76%), Postives = 68/93 (73.12%), Query Frame = 2
Query:  188 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEI 466
            D + F+ +L  S+ YNRRGFG  EE    + Q Y S++I+ ++ENG+E   G V ++LAE++GFCWGVERAV IAYE R+ +P E+IWITNEI
Sbjct:    2 DTRAFKRSLHHSERYNRRGFGRAEEVAGSLEQAYQSELIQSIRENGYELREGRVTIRLAEAFGFCWGVERAVAIAYETRRHYPTERIWITNEI 94          
BLAST of CX289099 vs. ExPASy Swiss-Prot
Match: ISPH_CYAP8 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 8801) GN=ispH PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 6.501e-26
Identity = 47/93 (50.54%), Postives = 72/93 (77.42%), Query Frame = 2
Query:  188 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEI 466
            D K F+ +L +S+NY+R+GFG  E  + +MN EY S +I+++++N +++  GNV + LA+++GFCWGVERAV +AYE R+ FP+E IWITNE+
Sbjct:    2 DTKAFKRSLQQSENYHRKGFGQTEAAMGVMNTEYQSSLIQQIRQNNYQWKQGNVTIHLAQAFGFCWGVERAVAMAYETRQHFPKESIWITNEL 94          
BLAST of CX289099 vs. ExPASy Swiss-Prot
Match: ISPH_CYAP7 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 7424) GN=ispH PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 6.501e-26
Identity = 45/93 (48.39%), Postives = 73/93 (78.49%), Query Frame = 2
Query:  188 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEI 466
            D K F+ +L +S+NY+R+GFG ++E + +MN EY S +I++++ N +  T G+V ++LAE++GFCWGVERAV ++YE R+ FP ++IW+TNE+
Sbjct:    2 DTKAFKRSLQQSENYHRKGFGQEDEAMGVMNSEYQSSLIQEIRNNNYRLTQGDVTIRLAEAFGFCWGVERAVAMSYETRQHFPNQRIWLTNEV 94          
BLAST of CX289099 vs. ExPASy Swiss-Prot
Match: ISPH_CYAP4 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ispH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.448e-25
Identity = 49/93 (52.69%), Postives = 70/93 (75.27%), Query Frame = 2
Query:  188 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEI 466
            D K F+ +L  S+ Y+R+GFGH+ E  E++  EY S +I++++ENG  +  G V ++LAE++GFCWGVERAV +AYE R+ FP E+IWITNEI
Sbjct:    2 DTKAFKRSLHSSNQYHRKGFGHEAEVTEMLRFEYQSSLIQQIRENGNRFQRGEVTIQLAEAFGFCWGVERAVALAYETRQHFPTERIWITNEI 94          
BLAST of CX289099 vs. ExPASy Swiss-Prot
Match: ISPH_THEEB (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Thermosynechococcus elongatus (strain BP-1) GN=ispH PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.892e-25
Identity = 48/93 (51.61%), Postives = 70/93 (75.27%), Query Frame = 2
Query:  188 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEI 466
            D + F+ +L  S+NY+R+GFGH EE  + +  EY S +I++++ NG+ +  G+V ++LAE++GFCWGVERAV +AYE R  FP E+IWITNEI
Sbjct:    2 DTRAFKRSLHSSENYHRKGFGHGEEVNQQLQGEYQSSLIQQIRANGYRWQQGDVTIRLAEAFGFCWGVERAVALAYETRTHFPTERIWITNEI 94          
BLAST of CX289099 vs. ExPASy Swiss-Prot
Match: ISPH_SYNS3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain CC9311) GN=ispH PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.892e-25
Identity = 49/93 (52.69%), Postives = 67/93 (72.04%), Query Frame = 2
Query:  188 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEI 466
            D   F+ +L  SD YNRRGFG  +E    + Q Y S +I  +++NG+  T G +KV+LAE++GFCWGVERAV +AYE R+ +P+E+IWITNEI
Sbjct:    2 DTHAFKRSLHHSDRYNRRGFGRADEVAGSLEQAYQSSLIGSIRDNGYSLTHGRLKVRLAEAFGFCWGVERAVAMAYETRRHYPQERIWITNEI 94          
The following BLAST results are available for this feature:
BLAST of CX289099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ISPH_MICAN6.283e-2956.994-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CYAA58.205e-2956.994-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNP29.072e-2855.914-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_ACAM12.640e-2752.694-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNR36.501e-2653.764-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CYAP86.501e-2650.544-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CYAP76.501e-2648.394-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CYAP41.448e-2552.694-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_THEEB1.892e-2551.614-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNS31.892e-2552.694-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionC02009B04SK IF1 Citrus clementina cDNA clone C02009B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289099 ID=CX289099; Name=CX289099; organism=Citrus clementina; type=EST; length=467bp
GAATCCGTGAATCTCCCTCATCATGGCGACGACTCTGCAATTCTGCCGTG
TTTGCGCGCGAACTGACATAGGTTCGCGCAGTAATAATCGCTCCGGAGCG
CTGGCTCCGCCGCGCCGGAGGCCTGTGATCGTCAGGTGCTCCGGTGAAAA
ATCGCCGAGCTCGGCGGCGGCTATTGGTGCCGAATTTGACGCGAAACTGT
TTCGGCATAACTTGACGAGAAGTGATAATTACAATCGGAGAGGATTTGGC
CACAAGGAAGAGACTTTGGAGCTCATGAATCAGGAGTACACAAGTGATAT
TATAAAGAAATTGAAGGAGAATGGATTTGAGTATACTTGGGGAAATGTTA
AGGTGAAGCTGGCCGAATCATATGGCTTTTGCTGGGGAGTTGAGCGTGCT
GTGCAGATTGCTTATGAAGCAAGAAAACAGTTTCCTGAGGAGAAGATCTG
GATTACCAATGAAATCA
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