CX289101

Overview
NameCX289101
Unique NameCX289101
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length417
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX289101_ssr11 microsatellite CX289101_ssr11:11..24. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15497 contig Ccv1_Contig15497:22..438. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.773e-20
Identity = 52/70 (74.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            LIKLLLIGDSGVGKSCLLLR                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAY
Sbjct:    9 LIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 78
[Close]
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.773e-20
Identity = 52/70 (74.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            LIKLLLIGDSGVGKSCLLLR                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAY
Sbjct:   15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 84
[Close]
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.773e-20
Identity = 52/70 (74.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            LIKLLLIGDSGVGKSCLLLR                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAY
Sbjct:   15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 84
[Close]
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.160e-20
Identity = 51/70 (72.86%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            LIKLLLIGDSGVGKSCLLLR                  KIRTIEL+GKRIKLQIWDTAGQERFRTITTAY
Sbjct:   15 LIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAY 84
[Close]
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.739e-20
Identity = 50/70 (71.43%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L+KLLLIGDSGVGKSCLLLR                  KIRTIEL+GKRIKLQIWDTAGQERFRTITTAY
Sbjct:   15 LVKLLLIGDSGVGKSCLLLRFSDGSFTPSFIATIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAY 84
[Close]
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.450e-19
Identity = 48/70 (68.57%), Postives = 50/70 (71.43%), Query Frame = 2 
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KLLLIGDSGVGK+CLL R                  KIRTIELDGK+IKLQIWDTAGQERFRTITTAY
Sbjct:    8 LFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAY 77
[Close]
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.450e-19
Identity = 48/70 (68.57%), Postives = 50/70 (71.43%), Query Frame = 2 
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KLLLIGDSGVGK+CLL R                  KIRTIELDGK+IKLQIWDTAGQERFRTITTAY
Sbjct:    8 LFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAY 77
[Close]
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.450e-19
Identity = 48/70 (68.57%), Postives = 50/70 (71.43%), Query Frame = 2 
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KLLLIGDSGVGK+CLL R                  KIRTIELDGK+IKLQIWDTAGQERFRTITTAY
Sbjct:    8 LFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAY 77
[Close]
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 7.450e-19
Identity = 48/70 (68.57%), Postives = 50/70 (71.43%), Query Frame = 2 
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KLLLIGDSGVGK+CLL R                  KIRTIELDGK+IKLQIWDTAGQERFRTITTAY
Sbjct:    8 LFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAY 77
[Close]
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB8B_BOVIN (Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.450e-19
Identity = 48/70 (68.57%), Postives = 50/70 (71.43%), Query Frame = 2 
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KLLLIGDSGVGK+CLL R                  KIRTIELDGK+IKLQIWDTAGQERFRTITTAY
Sbjct:    8 LFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAY 77
The following BLAST results are available for this feature:
BLAST of CX289101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
YPT2_SCHPO1.773e-2074.29GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]
RB1BV_BETVU1.773e-2074.29Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
ARA3_ARATH1.773e-2074.29Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
RAB8A_DICDI5.160e-2072.86Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]
RAB8B_DICDI6.739e-2071.43Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]
RAB8B_RAT7.450e-1968.57Ras-related protein Rab-8B OS=Rattus norvegicus GN... [more]
RAB8B_PONAB7.450e-1968.57Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8... [more]
RAB8B_MOUSE7.450e-1968.57Ras-related protein Rab-8B OS=Mus musculus GN=Rab8... [more]
RAB8B_HUMAN7.450e-1968.57Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
RAB8B_BOVIN7.450e-1968.57Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B ... [more]

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Properties
Property NameValue
Genbank descriptionC02009B06SK IF1 Citrus clementina cDNA clone C02009B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289101 ID=CX289101; Name=CX289101; organism=Citrus clementina; type=EST; length=417bp
AGAGAGAGCAAGAGAGAGAGAGAGACCGAGTCCCCCCCCCCCCCACGCAC
GCACAGACTCTCTGTTCACAAGCAATCTCTCCCATGTTACCGGCGACTTG
TTAAATCTTCTCACCCTTACAGTTTCAGAAAGAGAGTAATTGATTTGTTG
TGAGAGAGAAGAGATGGCTGCACCACCAGCGAGGGCACGTGCTGATTATG
ATTACCTCATCAAGCTTCTTTTGATCGGTGACAGCGGTGTGGGGAAGAGT
TGTTTGCTTCTGCGATTTTCAGATGGTTCCTTCACAACCAGTTTTATTAC
TACTATTGGCATTGATTTTAAGATAAGAACCATCGAGCTTGATGGAAAAC
GGATTAAATTGCAAATTTGGGATACAGCTGGTCAGGAACGGTTTCGAACC
ATCACAACAGCTTACTA
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