CX289106

Overview
NameCX289106
Unique NameCX289106
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length151
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig173 contig Ccv1_Contig173:1..151. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX289106 vs. ExPASy Swiss-Prot
Match: R27A2_ARATH (60S ribosomal protein L27a-2 OS=Arabidopsis thaliana GN=RPL27AB PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.210e-18
Identity = 40/49 (81.63%), Postives = 47/49 (95.92%), Query Frame = 2 
Query:    2 LRNKFHCPIVNVDKLWSMVPQEVKAKASKDNVPMIDVTQFGYFKVLGKG 148
            LRNKF CPIVN+DKLWS+VP++VKAK+SKDNVP+IDVTQ G+FKVLGKG
Sbjct:   64 LRNKFFCPIVNLDKLWSLVPEDVKAKSSKDNVPLIDVTQHGFFKVLGKG 112
[Close]
BLAST of CX289106 vs. ExPASy Swiss-Prot
Match: R27A3_ARATH (60S ribosomal protein L27a-3 OS=Arabidopsis thaliana GN=RPL27AC PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 4.923e-18
Identity = 39/49 (79.59%), Postives = 47/49 (95.92%), Query Frame = 2 
Query:    2 LRNKFHCPIVNVDKLWSMVPQEVKAKASKDNVPMIDVTQFGYFKVLGKG 148
            LRNKF CPIVN+DKLWS+VP++VKAK++KDNVP+IDVTQ G+FKVLGKG
Sbjct:   64 LRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGFFKVLGKG 112
[Close]
BLAST of CX289106 vs. ExPASy Swiss-Prot
Match: RL27A_OSCBR (60S ribosomal protein L27a OS=Oscheius brevesophaga GN=rpl-27a PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.829e-11
Identity = 27/49 (55.10%), Postives = 37/49 (75.51%), Query Frame = 2 
Query:    5 RNKFHCPIVNVDKLWSMVPQEVKAKASKDNVPMIDVTQFGYFKVLGKGV 151
            +N  +CP VNVD+LW++VP+E K K S +  P+ID  + GYFKVLGKG+
Sbjct:   65 KNHHYCPTVNVDRLWALVPEEQKTKVSAEKAPVIDCVKAGYFKVLGKGL 113
The following BLAST results are available for this feature:
BLAST of CX289106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
R27A2_ARATH2.210e-1881.6360S ribosomal protein L27a-2 OS=Arabidopsis thalia... [more]
R27A3_ARATH4.923e-1879.5960S ribosomal protein L27a-3 OS=Arabidopsis thalia... [more]
RL27A_OSCBR5.829e-1155.1060S ribosomal protein L27a OS=Oscheius brevesophag... [more]
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Properties
Property NameValue
Genbank descriptionC02009B12SK IF1 Citrus clementina cDNA clone C02009B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289106 ID=CX289106; Name=CX289106; organism=Citrus clementina; type=EST; length=151bp
ACTGCGTAATAAATTTCATTGCCCAATTGTGAACGTCGACAAGCTTTGGT
CGATGGTACCTCAGGAGGTCAAAGCCAAGGCTTCCAAAGACAATGTGCCA
ATGATCGATGTGACTCAGTTTGGCTACTTTAAGGTTTTGGGTAAGGGCGT
T
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