CX289111

Overview
NameCX289111
Unique NameCX289111
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length226
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289111 vs. ExPASy Swiss-Prot
Match: RL31_PANGI (60S ribosomal protein L31 OS=Panax ginseng GN=RPL31 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.204e-34
Identity = 70/74 (94.59%), Postives = 73/74 (98.65%), Query Frame = 3
Query:    3 RKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIA 224
            RKEEVVTRE+TINLHKRLHGCTFKKKAP AIKEIRKFA+KAMGTKDVRVDVKLNKQIWSRGIRSVP+RVRVRIA
Sbjct:    8 RKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTKDVRVDVKLNKQIWSRGIRSVPRRVRVRIA 81          
BLAST of CX289111 vs. ExPASy Swiss-Prot
Match: RL31_NICGU (60S ribosomal protein L31 OS=Nicotiana glutinosa GN=RPL31 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.429e-33
Identity = 69/74 (93.24%), Postives = 72/74 (97.30%), Query Frame = 3
Query:    3 RKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIA 224
            RKEEVVTRE+TINLHKRLH CTFKKKAP AIKEIRKFA+KAMGTKDVRVDVKLNKQIWSRGIRSVP+RVRVRIA
Sbjct:    8 RKEEVVTREYTINLHKRLHSCTFKKKAPTAIKEIRKFAQKAMGTKDVRVDVKLNKQIWSRGIRSVPRRVRVRIA 81          
BLAST of CX289111 vs. ExPASy Swiss-Prot
Match: RL31_PERFR (60S ribosomal protein L31 OS=Perilla frutescens GN=RPL31 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.157e-33
Identity = 67/74 (90.54%), Postives = 72/74 (97.30%), Query Frame = 3
Query:    3 RKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIA 224
            RKEEVV+RE+TINLHKRLHGCTFKKKAPKAIKEIRKFA+KAMGT DVRVDVKLNK IWSRGIRSVP+R+RVRIA
Sbjct:    9 RKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKHIWSRGIRSVPRRIRVRIA 82          
BLAST of CX289111 vs. ExPASy Swiss-Prot
Match: RL313_ARATH (60S ribosomal protein L31-3 OS=Arabidopsis thaliana GN=RPL31C PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 3.519e-32
Identity = 64/74 (86.49%), Postives = 71/74 (95.95%), Query Frame = 3
Query:    3 RKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIA 224
            RKEEV+TRE+TINLH+RLH CTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWS+GIR  P+R+RVR+A
Sbjct:    7 RKEEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVA 80          
BLAST of CX289111 vs. ExPASy Swiss-Prot
Match: RL312_ARATH (60S ribosomal protein L31-2 OS=Arabidopsis thaliana GN=RPL31B PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 6.003e-32
Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = 3
Query:    3 RKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIA 224
            RKEEVVTRE+TINLH+RLH CTFKKKAPKAIKEIRKFAEK MGTKDVRVDVKLNKQIWS+GIR  P+R+RVR+A
Sbjct:    7 RKEEVVTREYTINLHRRLHSCTFKKKAPKAIKEIRKFAEKEMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVA 80          
BLAST of CX289111 vs. ExPASy Swiss-Prot
Match: RL311_ARATH (60S ribosomal protein L31-1 OS=Arabidopsis thaliana GN=RPL31A PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.082e-31
Identity = 63/74 (85.14%), Postives = 69/74 (93.24%), Query Frame = 3
Query:    3 RKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIA 224
            RKEEVVTRE+TINLH+RLH CTFKKKAP AIKEIRKFA KAMGTKDVRVDVKLNKQIWS+GIR  P+R+RVR+A
Sbjct:    7 RKEEVVTREYTINLHRRLHSCTFKKKAPNAIKEIRKFALKAMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVA 80          
BLAST of CX289111 vs. ExPASy Swiss-Prot
Match: RL31_PICMA (60S ribosomal protein L31 OS=Picea mariana GN=RPL31 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.338e-30
Identity = 59/74 (79.73%), Postives = 69/74 (93.24%), Query Frame = 3
Query:    3 RKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIA 224
            R+ EV TRE+TINLH+RLHGCTFKK APKA+KEIRKFA+KAMGT DVR+DVKLNK +WSRGIRSVP+R+RVRI+
Sbjct:    8 RRNEVATREYTINLHRRLHGCTFKKMAPKAVKEIRKFAQKAMGTTDVRLDVKLNKAVWSRGIRSVPRRMRVRIS 81          
BLAST of CX289111 vs. ExPASy Swiss-Prot
Match: RL31_SPOFR (60S ribosomal protein L31 OS=Spodoptera frugiperda GN=RpL31 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.432e-25
Identity = 53/71 (74.65%), Postives = 64/71 (90.14%), Query Frame = 3
Query:   12 EVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIA 224
            EVVTRE+T+NLHKRLHG  FKK+AP+AIKEIRKFAEK MGT DVRVD +LNK +WS+G+R+VP RVRVR++
Sbjct:   16 EVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDVRVDTRLNKFLWSKGVRNVPFRVRVRLS 86          
BLAST of CX289111 vs. ExPASy Swiss-Prot
Match: RL31_HELVI (60S ribosomal protein L31 OS=Heliothis virescens GN=RpL31 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.432e-25
Identity = 53/71 (74.65%), Postives = 64/71 (90.14%), Query Frame = 3
Query:   12 EVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIA 224
            EVVTRE+T+NLHKRLHG  FKK+AP+AIKEIRKFAEK MGT DVRVD +LNK +WS+G+R+VP RVRVR++
Sbjct:   16 EVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDVRVDTRLNKFLWSKGVRNVPFRVRVRLS 86          
BLAST of CX289111 vs. ExPASy Swiss-Prot
Match: RL31_CYAPA (60S ribosomal protein L31 OS=Cyanophora paradoxa GN=RPL31 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.191e-25
Identity = 53/74 (71.62%), Postives = 64/74 (86.49%), Query Frame = 3
Query:    3 RKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIA 224
            R  E+VTRE+TINLHKRLHG  FKK+AP+A+KEI+KFA K MGT DVRVD +LNK +W++GIRSVP RVRVR+A
Sbjct:   10 RAAEIVTREYTINLHKRLHGVGFKKRAPRAVKEIKKFASKIMGTTDVRVDPRLNKFVWNQGIRSVPYRVRVRLA 83          
The following BLAST results are available for this feature:
BLAST of CX289111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RL31_PANGI2.204e-3494.5960S ribosomal protein L31 OS=Panax ginseng GN=RPL3... [more]
RL31_NICGU1.429e-3393.2460S ribosomal protein L31 OS=Nicotiana glutinosa G... [more]
RL31_PERFR4.157e-3390.5460S ribosomal protein L31 OS=Perilla frutescens GN... [more]
RL313_ARATH3.519e-3286.4960S ribosomal protein L31-3 OS=Arabidopsis thalian... [more]
RL312_ARATH6.003e-3286.4960S ribosomal protein L31-2 OS=Arabidopsis thalian... [more]
RL311_ARATH5.082e-3185.1460S ribosomal protein L31-1 OS=Arabidopsis thalian... [more]
RL31_PICMA7.338e-3079.7360S ribosomal protein L31 OS=Picea mariana GN=RPL3... [more]
RL31_SPOFR1.432e-2574.6560S ribosomal protein L31 OS=Spodoptera frugiperda... [more]
RL31_HELVI1.432e-2574.6560S ribosomal protein L31 OS=Heliothis virescens G... [more]
RL31_CYAPA3.191e-2571.6260S ribosomal protein L31 OS=Cyanophora paradoxa G... [more]

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Properties
Property NameValue
Genbank descriptionC02009C05SK IF1 Citrus clementina cDNA clone C02009C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289111 ID=CX289111; Name=CX289111; organism=Citrus clementina; type=EST; length=226bp
GACGAAAGGAGGAGGTGGTGACCAGAGAGTTCACCATCAACCTTCACAAG
CGTCTACATGGCTGTACATTCAAGAAGAAAGCTCCAAAAGCCATTAAGGA
GATCAGGAAATTTGCAGAGAAAGCTATGGGCACTAAGGATGTTAGGGTTG
ATGTCAAATTGAACAAGCAAATCTGGAGCAGGGGCATCCGAAGTGTCCCA
AAGAGGGTTAGGGTTCGCATTGCTCG
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