CX289117

Overview
NameCX289117
Unique NameCX289117
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length409
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289117 vs. ExPASy Swiss-Prot
Match: U2AFB_ARATH (Splicing factor U2af small subunit B OS=Arabidopsis thaliana GN=U2AF35B PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 7.424e-59
Identity = 104/136 (76.47%), Postives = 115/136 (84.56%), Query Frame = 1
Query:    1 RHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCN 408
            RHGDRCSRLH +P+ISPTLLLSNMYQRPDMITPGVDPQGQ LDP KIQDH            +K+GE+ESLN+CDNLADHM+GNVYV F+EE+HAA AL+ L GRFY+GRPII DFSPVTDFREATCRQYEEN CN
Sbjct:   28 RHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEEDHAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCN 163          
BLAST of CX289117 vs. ExPASy Swiss-Prot
Match: U2AFA_ARATH (Splicing factor U2af small subunit A OS=Arabidopsis thaliana GN=U2AF35A PE=1 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 4.812e-58
Identity = 105/136 (77.21%), Postives = 114/136 (83.82%), Query Frame = 1
Query:    1 RHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCN 408
            RHGDRCSRLH +P+ISPTLLLSNMYQRPDMITPGVD QGQ LDPRKIQ+H             K+GEIESLNICDNLADHM+GNVYVQF+EE+ AA AL+ L GRFY+GRPII DFSPVTDFREATCRQYEEN CN
Sbjct:   28 RHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCN 163          
BLAST of CX289117 vs. ExPASy Swiss-Prot
Match: U2AFA_ORYSJ (Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica GN=U2AF35A PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 1.892e-54
Identity = 98/136 (72.06%), Postives = 110/136 (80.88%), Query Frame = 1
Query:    1 RHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCN 408
            RHGDRCSRLH KPS+SPTLLLSNMY RPDMITPG+D QG  +DP KIQ              SKYGEIESL++CDN ADHM+GNVYVQFREE+ AA AL+ L GR+Y+GRPIIV+FSPV+DFREATCRQYEEN CN
Sbjct:   28 RHGDRCSRLHNKPSVSPTLLLSNMYLRPDMITPGIDAQGNPIDPEKIQADFEDFYEDIFEELSKYGEIESLHVCDNFADHMIGNVYVQFREEDQAARALQALTGRYYSGRPIIVEFSPVSDFREATCRQYEENSCN 163          
BLAST of CX289117 vs. ExPASy Swiss-Prot
Match: U2AFB_ORYSJ (Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica GN=U2AF35B PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 2.471e-54
Identity = 94/136 (69.12%), Postives = 112/136 (82.35%), Query Frame = 1
Query:    1 RHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCN 408
            RHGDRCSRLH +P++SPT++L+NMYQRPDMITPGVD QGQ +DP K+Q+H            SK+GE+E+LN+CDNLADHM+GNVYVQFREEE A  A   L GRFY+GRPIIV++SPVTDFREATCRQ+EEN CN
Sbjct:   28 RHGDRCSRLHNRPTVSPTIVLANMYQRPDMITPGVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEEQAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCN 163          
BLAST of CX289117 vs. ExPASy Swiss-Prot
Match: U2AF1_MOUSE (Splicing factor U2AF 35 kDa subunit OS=Mus musculus GN=U2af1 PE=2 SV=4)

HSP 1 Score: 139.043 bits (349), Expect = 6.997e-33
Identity = 67/136 (49.26%), Postives = 87/136 (63.97%), Query Frame = 1
Query:    1 RHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXS-KYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVC 405
            RHGDRCSRLH KP+ S T+ L N+Y+ P   +   D    A+   ++Q+H              KYGE+E +N+CDNL DH+VGNVYV+FR EE A  A+ +LN R++ G+PI  + SPVTDFREA CRQYE   C
Sbjct:   28 RHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGEC 163          
BLAST of CX289117 vs. ExPASy Swiss-Prot
Match: U2AF1_HUMAN (Splicing factor U2AF 35 kDa subunit OS=Homo sapiens GN=U2AF1 PE=1 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 6.997e-33
Identity = 67/136 (49.26%), Postives = 87/136 (63.97%), Query Frame = 1
Query:    1 RHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXS-KYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVC 405
            RHGDRCSRLH KP+ S T+ L N+Y+ P   +   D    A+   ++Q+H              KYGE+E +N+CDNL DH+VGNVYV+FR EE A  A+ +LN R++ G+PI  + SPVTDFREA CRQYE   C
Sbjct:   28 RHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGEC 163          
BLAST of CX289117 vs. ExPASy Swiss-Prot
Match: U2AF1_BOVIN (Splicing factor U2AF 35 kDa subunit OS=Bos taurus GN=U2AF1 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 6.997e-33
Identity = 67/136 (49.26%), Postives = 87/136 (63.97%), Query Frame = 1
Query:    1 RHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXS-KYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVC 405
            RHGDRCSRLH KP+ S T+ L N+Y+ P   +   D    A+   ++Q+H              KYGE+E +N+CDNL DH+VGNVYV+FR EE A  A+ +LN R++ G+PI  + SPVTDFREA CRQYE   C
Sbjct:   28 RHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGEC 163          
BLAST of CX289117 vs. ExPASy Swiss-Prot
Match: U2AF1_SCHPO (Splicing factor U2AF 23 kDa subunit OS=Schizosaccharomyces pombe GN=SPAP8A3.06 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 2.659e-32
Identity = 64/135 (47.41%), Postives = 87/135 (64.44%), Query Frame = 1
Query:    1 RHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVC 405
            RHG+RCSR H KP+ S T+L  NMY+ P       +P G+    R++ +             SKYGE+E L +CDN+ DH+VGNVYV+F+ EE A NA+ +LN R+Y+ RP+  + SPVTDFREA CRQ+E + C
Sbjct:   28 RHGERCSRKHVKPNFSQTILCPNMYKNPIH-----EPNGKKFTQRELAEQFDAFYEDMFCEFSKYGEVEQLVVCDNVGDHLVGNVYVRFKYEESAQNAIDDLNSRWYSQRPVYAELSPVTDFREACCRQHETSEC 157          
BLAST of CX289117 vs. ExPASy Swiss-Prot
Match: U2AF1_DROME (Splicing factor U2af 38 kDa subunit OS=Drosophila melanogaster GN=U2af38 PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 1.010e-31
Identity = 65/138 (47.10%), Postives = 83/138 (60.14%), Query Frame = 1
Query:    1 RHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQA--LDPRKIQDHXXXXXXXXXXXXS-KYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVC 405
            RHGDRCSR+H KP+ S T+LL N+Y  P       D       +   ++Q+H              KYGEIE +N+CDNL DH+VGNVY++FR E  A  A  +LN R++ GRP+  + SPVTDFREA CRQYE   C
Sbjct:   28 RHGDRCSRIHNKPTFSQTVLLQNLYVNPQNSAKSADGSHLVANVSDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKAANDLNNRWFGGRPVYSELSPVTDFREACCRQYEMGEC 165          
BLAST of CX289117 vs. ExPASy Swiss-Prot
Match: U2AF4_RAT (Splicing factor U2AF 26 kDa subunit OS=Rattus norvegicus GN=U2af1l4 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.320e-31
Identity = 64/136 (47.06%), Postives = 84/136 (61.76%), Query Frame = 1
Query:    1 RHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXS-KYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVC 405
            RHGDRCSRLH KP+ S T++L N+Y+ P       D     +   ++Q+H              KYGEIE +N+CDNL DH+VGNVYV+FR EE A  A+  LN R++ G+ +  + SPVTDFRE+ CRQYE   C
Sbjct:   28 RHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGEC 163          
The following BLAST results are available for this feature:
BLAST of CX289117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
U2AFB_ARATH7.424e-5976.47Splicing factor U2af small subunit B OS=Arabidopsi... [more]
U2AFA_ARATH4.812e-5877.21Splicing factor U2af small subunit A OS=Arabidopsi... [more]
U2AFA_ORYSJ1.892e-5472.06Splicing factor U2af small subunit A OS=Oryza sati... [more]
U2AFB_ORYSJ2.471e-5469.12Splicing factor U2af small subunit B OS=Oryza sati... [more]
U2AF1_MOUSE6.997e-3349.26Splicing factor U2AF 35 kDa subunit OS=Mus musculu... [more]
U2AF1_HUMAN6.997e-3349.26Splicing factor U2AF 35 kDa subunit OS=Homo sapien... [more]
U2AF1_BOVIN6.997e-3349.26Splicing factor U2AF 35 kDa subunit OS=Bos taurus ... [more]
U2AF1_SCHPO2.659e-3247.41Splicing factor U2AF 23 kDa subunit OS=Schizosacch... [more]
U2AF1_DROME1.010e-3147.10Splicing factor U2af 38 kDa subunit OS=Drosophila ... [more]
U2AF4_RAT1.320e-3147.06Splicing factor U2AF 26 kDa subunit OS=Rattus norv... [more]

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Properties
Property NameValue
Genbank descriptionC02009D01SK IF1 Citrus clementina cDNA clone C02009D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289117 ID=CX289117; Name=CX289117; organism=Citrus clementina; type=EST; length=409bp
AGGCACGGCGATCGATGCTCTCGGCTTCATACGAAGCCCAGCATCAGCCC
CACACTCCTCCTCTCCAACATGTACCAACGCCCCGACATGATCACTCCCG
GCGTTGACCCGCAGGGCCAGGCCCTTGACCCTCGCAAGATCCAAGATCAC
TTCGAGGATTTTTACGAGGATCTGTTCGAGGAACTAAGCAAGTACGGCGA
GATTGAGAGCTTGAACATCTGTGACAATTTGGCCGATCACATGGTCGGTA
ACGTGTATGTTCAGTTTAGAGAAGAAGAACATGCTGCTAATGCTCTTCGC
AATCTCAATGGGAGGTTCTATGCAGGGCGCCCCATCATTGTCGACTTCTC
TCCTGTCACGGATTTTCGGGAAGCTACTTGTAGGCAGTACGAGGAAAATG
TATGCAATC
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