CX289148
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX289148 vs. ExPASy Swiss-Prot
Match: CNG20_ARATH (Probable cyclic nucleotide-gated ion channel 20, chloroplastic OS=Arabidopsis thaliana GN=CNGC20 PE=2 SV=1) HSP 1 Score: 210.69 bits (535), Expect = 1.889e-54 Identity = 100/128 (78.12%), Postives = 118/128 (92.19%), Query Frame = 3 Query: 3 LLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIE 386 LLLFA LIGNMQNFLQAL KR L+M+LRRRDVEQWM HRRLP+ +RR+VREAER+NWAATRGVNE++LF N+P+DLQR+IRRHLFKF+KKVRIF+LMDEPILDAI ERL+Q+TYI S +L+RGGL+E Sbjct: 501 LLLFALLIGNMQNFLQALGKRNLEMTLRRRDVEQWMSHRRLPDGIRRRVREAERFNWAATRGVNEELLFENMPDDLQRDIRRHLFKFLKKVRIFSLMDEPILDAIRERLKQRTYIGSSTVLHRGGLVE 628
BLAST of CX289148 vs. ExPASy Swiss-Prot
Match: CNG19_ARATH (Putative cyclic nucleotide-gated ion channel 19 OS=Arabidopsis thaliana GN=CNGC19 PE=2 SV=1) HSP 1 Score: 192.971 bits (489), Expect = 4.077e-49 Identity = 90/128 (70.31%), Postives = 112/128 (87.50%), Query Frame = 3 Query: 3 LLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIE 386 LLLFA LIGNM NFLQ+L +RR++M LR+RDVEQWM HRRLPE +R++VRE ERY WAATRGVNE++LF N+P+DLQR+IRRHLFKF+KKVRIF+LMDE +LD+I ERL+Q+TYI S +L+ GL+E Sbjct: 468 LLLFARLIGNMHNFLQSLDRRRMEMMLRKRDVEQWMSHRRLPEDIRKRVREVERYTWAATRGVNEELLFENMPDDLQRDIRRHLFKFLKKVRIFSLMDESVLDSIRERLKQRTYIRSSTVLHHRGLVE 595
BLAST of CX289148 vs. ExPASy Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2) HSP 1 Score: 137.502 bits (345), Expect = 2.033e-32 Identity = 64/125 (51.20%), Postives = 88/125 (70.40%), Query Frame = 3 Query: 3 LLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHL-FKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRG 374 L+LFA LIGNMQ +L++ R +M +R+RD EQWM HR LPE LR+++R E+Y W TRGV E+ L NLP+DL+R+I+RHL +KKV +F +MDE +LDA+C+RLR Y S ++ G Sbjct: 380 LVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLPEDLRKRIRRYEQYRWQETRGVEEETLLRNLPKDLRRDIKRHLCLDLLKKVPLFEIMDEQLLDAVCDRLRPVLYTENSYVIREG 504
BLAST of CX289148 vs. ExPASy Swiss-Prot
Match: CNG17_ARATH (Probable cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana GN=CNGC17 PE=2 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 1.318e-31 Identity = 66/128 (51.56%), Postives = 92/128 (71.88%), Query Frame = 3 Query: 3 LLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHL-FKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLI 383 L+LFA LIGNMQ +LQ+L R + L++RD E+WMRHR+LPE+LR +VR E+Y W ATRGV+E++L +LP DL+R+I+RHL V++V F+ MD+ +LDAICERL G+ ++ G LI Sbjct: 388 LVLFAHLIGNMQTYLQSLTVRLEEWRLKKRDTEEWMRHRQLPEELRNRVRRYEQYKWLATRGVDEEVLLQSLPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLCTEGTYLVREGDLI 515
BLAST of CX289148 vs. ExPASy Swiss-Prot
Match: CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2) HSP 1 Score: 134.035 bits (336), Expect = 2.248e-31 Identity = 65/125 (52.00%), Postives = 89/125 (71.20%), Query Frame = 3 Query: 3 LLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHL-FKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRG 374 LLLFA LIGNMQ +LQ+L R +M ++RRD EQWM HR LP+ LR +VR ++Y W TRGV+E+ + +LP+DL+R+I+RHL V++V +FA MDE +LDAICERL+ Y + I+ G Sbjct: 415 LLLFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRSLPQNLRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTESTYIVREG 539
BLAST of CX289148 vs. ExPASy Swiss-Prot
Match: CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 6.539e-31 Identity = 66/125 (52.80%), Postives = 88/125 (70.40%), Query Frame = 3 Query: 3 LLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHL-FKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRG 374 LLLFA LIGNMQ +LQ+L R +M ++RRD EQWM HR LP +LR +VR ++Y W TRGV+E+ L NLP+DL+R+I+RHL V++V +F MDE +LDAICERL+ Y S ++ G Sbjct: 420 LLLFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPPELRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLYTESSYLVREG 544
BLAST of CX289148 vs. ExPASy Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 6.539e-31 Identity = 64/125 (51.20%), Postives = 89/125 (71.20%), Query Frame = 3 Query: 3 LLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHL-FKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRG 374 LLLFA LIGNMQ +LQ+L R +M ++RRD EQWM HR LP+ LR +VR ++Y W TRGV+E+ + +LP+DL+R+I+RHL V++V +FA MDE +LDAICERL+ + + I+ G Sbjct: 409 LLLFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRSLPQNLRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLFTESTYIVREG 533
BLAST of CX289148 vs. ExPASy Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 8.541e-31 Identity = 63/129 (48.84%), Postives = 91/129 (70.54%), Query Frame = 3 Query: 3 LLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHL-FKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIE 386 L+LF+FLIGNMQ +LQ+ R +M ++RRD EQWM HR LPE LR+++R E+Y W TRGV+E+ L +NLP+DL+R+I+RHL + +V +F MDE +LDA+C+RL+ Y S I+ G ++ Sbjct: 393 LVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVD 521
BLAST of CX289148 vs. ExPASy Swiss-Prot
Match: CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=2 SV=2) HSP 1 Score: 132.109 bits (331), Expect = 8.541e-31 Identity = 61/129 (47.29%), Postives = 88/129 (68.22%), Query Frame = 3 Query: 3 LLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHL-FKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIE 386 L+LFA LIGNMQ +L++ R +M +R+RD EQWM HR LP+ LR+++R E+Y W TRGV E+ L NLP+DL+R+I+RH +KKV +F +MDE +LDA+C++L+ Y S + G +E Sbjct: 381 LVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLPDDLRKRIRRYEQYKWQETRGVEEENLLRNLPKDLRRDIKRHFCLDLLKKVPLFEIMDEQLLDAVCDKLKPVLYTENSYAIREGDPVE 509
BLAST of CX289148 vs. ExPASy Swiss-Prot
Match: CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2) HSP 1 Score: 130.183 bits (326), Expect = 3.245e-30 Identity = 65/125 (52.00%), Postives = 88/125 (70.40%), Query Frame = 3 Query: 3 LLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHL-FKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRG 374 LLLFA LIGNMQ +LQ+L R +M ++RRD EQWM HR LP +LR +VR ++Y W TRGV+E+ L NLP+DL+R+I+RHL V++V +F MDE +LDAICERL+ + S ++ G Sbjct: 421 LLLFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPPELRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREG 545 The following BLAST results are available for this feature:
BLAST of CX289148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX289148 ID=CX289148; Name=CX289148; organism=Citrus clementina; type=EST; length=388bpback to top |