CX289148

Overview
NameCX289148
Unique NameCX289148
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length388
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289148 vs. ExPASy Swiss-Prot
Match: CNG20_ARATH (Probable cyclic nucleotide-gated ion channel 20, chloroplastic OS=Arabidopsis thaliana GN=CNGC20 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 1.889e-54
Identity = 100/128 (78.12%), Postives = 118/128 (92.19%), Query Frame = 3
Query:    3 LLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIE 386
            LLLFA LIGNMQNFLQAL KR L+M+LRRRDVEQWM HRRLP+ +RR+VREAER+NWAATRGVNE++LF N+P+DLQR+IRRHLFKF+KKVRIF+LMDEPILDAI ERL+Q+TYI  S +L+RGGL+E
Sbjct:  501 LLLFALLIGNMQNFLQALGKRNLEMTLRRRDVEQWMSHRRLPDGIRRRVREAERFNWAATRGVNEELLFENMPDDLQRDIRRHLFKFLKKVRIFSLMDEPILDAIRERLKQRTYIGSSTVLHRGGLVE 628          
BLAST of CX289148 vs. ExPASy Swiss-Prot
Match: CNG19_ARATH (Putative cyclic nucleotide-gated ion channel 19 OS=Arabidopsis thaliana GN=CNGC19 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 4.077e-49
Identity = 90/128 (70.31%), Postives = 112/128 (87.50%), Query Frame = 3
Query:    3 LLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIE 386
            LLLFA LIGNM NFLQ+L +RR++M LR+RDVEQWM HRRLPE +R++VRE ERY WAATRGVNE++LF N+P+DLQR+IRRHLFKF+KKVRIF+LMDE +LD+I ERL+Q+TYI  S +L+  GL+E
Sbjct:  468 LLLFARLIGNMHNFLQSLDRRRMEMMLRKRDVEQWMSHRRLPEDIRKRVREVERYTWAATRGVNEELLFENMPDDLQRDIRRHLFKFLKKVRIFSLMDESVLDSIRERLKQRTYIRSSTVLHHRGLVE 595          
BLAST of CX289148 vs. ExPASy Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 2.033e-32
Identity = 64/125 (51.20%), Postives = 88/125 (70.40%), Query Frame = 3
Query:    3 LLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHL-FKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRG 374
            L+LFA LIGNMQ +L++   R  +M +R+RD EQWM HR LPE LR+++R  E+Y W  TRGV E+ L  NLP+DL+R+I+RHL    +KKV +F +MDE +LDA+C+RLR   Y   S ++  G
Sbjct:  380 LVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLPEDLRKRIRRYEQYRWQETRGVEEETLLRNLPKDLRRDIKRHLCLDLLKKVPLFEIMDEQLLDAVCDRLRPVLYTENSYVIREG 504          
BLAST of CX289148 vs. ExPASy Swiss-Prot
Match: CNG17_ARATH (Probable cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana GN=CNGC17 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.318e-31
Identity = 66/128 (51.56%), Postives = 92/128 (71.88%), Query Frame = 3
Query:    3 LLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHL-FKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLI 383
            L+LFA LIGNMQ +LQ+L  R  +  L++RD E+WMRHR+LPE+LR +VR  E+Y W ATRGV+E++L  +LP DL+R+I+RHL    V++V  F+ MD+ +LDAICERL       G+ ++  G LI
Sbjct:  388 LVLFAHLIGNMQTYLQSLTVRLEEWRLKKRDTEEWMRHRQLPEELRNRVRRYEQYKWLATRGVDEEVLLQSLPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLCTEGTYLVREGDLI 515          
BLAST of CX289148 vs. ExPASy Swiss-Prot
Match: CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 2.248e-31
Identity = 65/125 (52.00%), Postives = 89/125 (71.20%), Query Frame = 3
Query:    3 LLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHL-FKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRG 374
            LLLFA LIGNMQ +LQ+L  R  +M ++RRD EQWM HR LP+ LR +VR  ++Y W  TRGV+E+ +  +LP+DL+R+I+RHL    V++V +FA MDE +LDAICERL+   Y   + I+  G
Sbjct:  415 LLLFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRSLPQNLRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTESTYIVREG 539          
BLAST of CX289148 vs. ExPASy Swiss-Prot
Match: CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.539e-31
Identity = 66/125 (52.80%), Postives = 88/125 (70.40%), Query Frame = 3
Query:    3 LLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHL-FKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRG 374
            LLLFA LIGNMQ +LQ+L  R  +M ++RRD EQWM HR LP +LR +VR  ++Y W  TRGV+E+ L  NLP+DL+R+I+RHL    V++V +F  MDE +LDAICERL+   Y   S ++  G
Sbjct:  420 LLLFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPPELRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLYTESSYLVREG 544          
BLAST of CX289148 vs. ExPASy Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.539e-31
Identity = 64/125 (51.20%), Postives = 89/125 (71.20%), Query Frame = 3
Query:    3 LLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHL-FKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRG 374
            LLLFA LIGNMQ +LQ+L  R  +M ++RRD EQWM HR LP+ LR +VR  ++Y W  TRGV+E+ +  +LP+DL+R+I+RHL    V++V +FA MDE +LDAICERL+   +   + I+  G
Sbjct:  409 LLLFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRSLPQNLRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLFTESTYIVREG 533          
BLAST of CX289148 vs. ExPASy Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.541e-31
Identity = 63/129 (48.84%), Postives = 91/129 (70.54%), Query Frame = 3
Query:    3 LLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHL-FKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIE 386
            L+LF+FLIGNMQ +LQ+   R  +M ++RRD EQWM HR LPE LR+++R  E+Y W  TRGV+E+ L +NLP+DL+R+I+RHL    + +V +F  MDE +LDA+C+RL+   Y   S I+  G  ++
Sbjct:  393 LVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVD 521          
BLAST of CX289148 vs. ExPASy Swiss-Prot
Match: CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 8.541e-31
Identity = 61/129 (47.29%), Postives = 88/129 (68.22%), Query Frame = 3
Query:    3 LLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHL-FKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIE 386
            L+LFA LIGNMQ +L++   R  +M +R+RD EQWM HR LP+ LR+++R  E+Y W  TRGV E+ L  NLP+DL+R+I+RH     +KKV +F +MDE +LDA+C++L+   Y   S  +  G  +E
Sbjct:  381 LVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLPDDLRKRIRRYEQYKWQETRGVEEENLLRNLPKDLRRDIKRHFCLDLLKKVPLFEIMDEQLLDAVCDKLKPVLYTENSYAIREGDPVE 509          
BLAST of CX289148 vs. ExPASy Swiss-Prot
Match: CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 3.245e-30
Identity = 65/125 (52.00%), Postives = 88/125 (70.40%), Query Frame = 3
Query:    3 LLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHL-FKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRG 374
            LLLFA LIGNMQ +LQ+L  R  +M ++RRD EQWM HR LP +LR +VR  ++Y W  TRGV+E+ L  NLP+DL+R+I+RHL    V++V +F  MDE +LDAICERL+   +   S ++  G
Sbjct:  421 LLLFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPPELRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREG 545          
The following BLAST results are available for this feature:
BLAST of CX289148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
CNG20_ARATH1.889e-5478.13Probable cyclic nucleotide-gated ion channel 20, c... [more]
CNG19_ARATH4.077e-4970.31Putative cyclic nucleotide-gated ion channel 19 OS... [more]
CNG10_ARATH2.033e-3251.20Probable cyclic nucleotide-gated ion channel 10 OS... [more]
CNG17_ARATH1.318e-3151.56Probable cyclic nucleotide-gated ion channel 17 OS... [more]
CNGC8_ARATH2.248e-3152.00Putative cyclic nucleotide-gated ion channel 8 OS=... [more]
CNGC9_ARATH6.539e-3152.80Putative cyclic nucleotide-gated ion channel 9 OS=... [more]
CNGC7_ARATH6.539e-3151.20Putative cyclic nucleotide-gated ion channel 7 OS=... [more]
CNGC1_ARATH8.541e-3148.84Cyclic nucleotide-gated ion channel 1 OS=Arabidops... [more]
CNG13_ARATH8.541e-3147.29Putative cyclic nucleotide-gated ion channel 13 OS... [more]
CNGC6_ARATH3.245e-3052.00Probable cyclic nucleotide-gated ion channel 6 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC02009G03SK IF1 Citrus clementina cDNA clone C02009G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289148 ID=CX289148; Name=CX289148; organism=Citrus clementina; type=EST; length=388bp
GCCTCTTGCTCTTTGCTTTTCTCATTGGAAATATGCAGAACTTTCTCCAG
GCTCTTGTAAAGAGGAGGTTGGATATGTCATTAAGACGTCGTGATGTGGA
GCAATGGATGAGACATCGACGCTTGCCTGAACAATTAAGAAGGCAAGTAC
GAGAAGCTGAACGATATAATTGGGCTGCCACCCGAGGGGTGAATGAAGAC
ATGCTGTTCACGAATTTGCCTGAAGATCTTCAGAGAGAGATAAGACGCCA
CCTCTTCAAATTTGTTAAAAAGGTTCGAATTTTTGCCCTGATGGATGAGC
CAATATTAGATGCTATTTGTGAGAGATTGAGACAAAAGACATACATCAGT
GGAAGCAAAATTTTATATCGTGGTGGTCTGATAGAGAA
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