CX289175

Overview
NameCX289175
Unique NameCX289175
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length517
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289175 vs. ExPASy Swiss-Prot
Match: HS23M_ARATH (23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.678e-26
Identity = 74/152 (48.68%), Postives = 89/152 (58.55%), Query Frame = 3
Query:   69 MASSLALKRLVSFNLIPRALRCTVAPSATSASRFFNTNAVRQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRSLSQVLNFMDQMTESPFFSGTRG----GLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEG 512
            MAS+LALKRL+S ++ PR+ R  + P+ +S  R FNTNAVR Y                                    TRS+SQVLN MDQ  E+P  S TRG    G RRGWD KE DDAL L IDMPGL +EDV+++LEQ+TLVIRGEG
Sbjct:    1 MASALALKRLLSSSIAPRS-RSVLRPAVSS--RLFNTNAVRSYDDDGENGDGVDLYRRSVPRRRGDFFSDVFDPFSP--TRSVSQVLNLMDQFMENPLLSATRGMGASGARRGWDIKEKDDALYLRIDMPGLSREDVKLALEQDTLVIRGEG 147          
BLAST of CX289175 vs. ExPASy Swiss-Prot
Match: HS235_ARATH (23.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.5 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.678e-26
Identity = 76/153 (49.67%), Postives = 92/153 (60.13%), Query Frame = 3
Query:   72 ASSLALKRLVSFNLI--PRALRCTVAPSATSASRFFNTNAVRQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRSLSQVLNFMDQMTESPFFSGTRG----GLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEG 512
            +S+LAL+RL+S + +  PRALR  V P A S SR FNTNA R Y                                    TRSLSQ+LNFMDQ++E P  S TRG    G+RRGW+ KE DDAL+L IDMPGL +EDV+++LEQNTLVIRGEG
Sbjct:    4 SSALALRRLLSSSTVAVPRALRA-VRPVAAS-SRLFNTNAARNYEDGVDRNHHSNRHVSRHGGDFFSHILDPFTP-----TRSLSQMLNFMDQVSEIPLVSATRGMGASGVRRGWNVKEKDDALHLRIDMPGLSREDVKLALEQNTLVIRGEG 149          
BLAST of CX289175 vs. ExPASy Swiss-Prot
Match: HS22M_PEA (Heat shock 22 kDa protein, mitochondrial OS=Pisum sativum GN=HSP22 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.052e-24
Identity = 69/149 (46.31%), Postives = 86/149 (57.72%), Query Frame = 3
Query:   69 MASSLALKRLVSFNLIPRALRCTVAPSATSASRFFNTNAVRQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRSLSQVLNFMDQMTESPFFSGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGG 515
            MASSLALKR +S  L+  +    + P A+SASR FNTNA+RQY                                     RSLSQVLN +D +T++P  S      RRGWDA+ET+DAL L +DMPGLGKEDV++S+EQNTL I+GE G
Sbjct:    1 MASSLALKRFLSSGLLSSSF---LRPVASSASRSFNTNAMRQYDQHSDDRNVDVYRHSFPRTRRDDLLLSDVFDPFSPP-RSLSQVLNMVDLLTDNPVLSAAS---RRGWDARETEDALFLRLDMPGLGKEDVKISVEQNTLTIKGEEG 142          
BLAST of CX289175 vs. ExPASy Swiss-Prot
Match: HS22M_SOYBN (Heat shock 22 kDa protein, mitochondrial OS=Glycine max GN=HSP23.9 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.875e-20
Identity = 30/41 (73.17%), Postives = 39/41 (95.12%), Query Frame = 3
Query:  390 RGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEG 512
            RGWDA+ET+DAL+L +DMPGL KEDV++S+EQNTL+I+GEG
Sbjct:  112 RGWDARETEDALHLRVDMPGLAKEDVKISVEQNTLIIKGEG 152          

HSP 2 Score: 39.6614 bits (91), Expect = 4.875e-20
Identity = 21/43 (48.84%), Postives = 32/43 (74.42%), Query Frame = 3
Query:   69 MASSLALKRLVSFNLIPRALRCTVAPSATSASRFFNTNAVRQY 197
            MASSL  KR +S +L+ R+L   + P+A+++ R F+TNA+RQY
Sbjct:    1 MASSLIAKRFLSSSLLSRSL---LRPAASASHRSFDTNAMRQY 40          

HSP 3 Score: 25.7942 bits (55), Expect = 4.875e-20
Identity = 12/24 (50.00%), Postives = 15/24 (62.50%), Query Frame = 2
Query:  284 CV*SIFTNKEPEPGPELHGSDDGE 355
            CV SIF++ E EPG E  G   G+
Sbjct:   72 CVGSIFSDSEFEPGSEHDGPGHGQ 95          
BLAST of CX289175 vs. ExPASy Swiss-Prot
Match: HS23C_CHERU (Small heat shock protein, chloroplastic OS=Chenopodium rubrum GN=HSP23 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 9.862e-19
Identity = 55/148 (37.16%), Postives = 77/148 (52.03%), Query Frame = 3
Query:   75 SSLALKRLVSFNLIPRALRCTVAPSATSASRFFNTNAVRQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRSLSQVLNFMDQMTESPFFSGTRGG---LRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGE 509
            +S+AL+RL S NL+   +   +     S SR FNTNA                                        TRS+ Q++N MDQ+ E+PF + +RG    +RRGWD +E ++AL L +DMPGL KEDV+VS+E NTL+I+ E
Sbjct:    2 ASMALRRLASRNLVSGGIFRPL-----SVSRSFNTNAQMGRVDHDHELDDRSNRAPISRRGDFPASFFSDVFDPFRATRSVGQLMNLMDQLMENPFMAASRGSGRAMRRGWDVREDEEALELKVDMPGLAKEDVKVSVEDNTLIIKSE 144          
BLAST of CX289175 vs. ExPASy Swiss-Prot
Match: HS24M_ORYSJ (24.1 kDa heat shock protein, mitochondrial OS=Oryza sativa subsp. japonica GN=HSP24.1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.779e-13
Identity = 55/160 (34.38%), Postives = 80/160 (50.00%), Query Frame = 3
Query:   69 MASSLALKRLVSFNLIPRALRCTVAPSATSA---------SRFFNTNA-VRQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT--RSLSQVLNFMDQMTESPFFSGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEG 512
            MAS +A KR+  F L+ + L  + A  A SA         SR +NT A +R++                                    +  +SL ++L+ MD +  +P        LRRGW+AKE+++AL+L +DMPGLGKE V+V  EQN+LVI+GEG
Sbjct:    1 MASIVASKRIPLFRLVEQLLAASPAQGAASALRPVAVAGGSRAYNTGAQLRRHERDESDDDSGRGYDTRRPTRDATMPAFFSDVFRDPFSAPQSLGRLLSLMDDLA-TPAGRAGAATLRRGWNAKESEEALHLRVDMPGLGKEHVKVWAEQNSLVIKGEG 159          
The following BLAST results are available for this feature:
BLAST of CX289175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
HS23M_ARATH1.678e-2648.6823.6 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS235_ARATH1.678e-2649.6723.5 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS22M_PEA2.052e-2446.31Heat shock 22 kDa protein, mitochondrial OS=Pisum ... [more]
HS22M_SOYBN4.875e-2073.17Heat shock 22 kDa protein, mitochondrial OS=Glycin... [more]
HS23C_CHERU9.862e-1937.16Small heat shock protein, chloroplastic OS=Chenopo... [more]
HS24M_ORYSJ2.779e-1334.3824.1 kDa heat shock protein, mitochondrial OS=Oryz... [more]
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Properties
Property NameValue
Genbank descriptionC02010A08SK IF1 Citrus clementina cDNA clone C02010A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289175 ID=CX289175; Name=CX289175; organism=Citrus clementina; type=EST; length=517bp
AGCCGCAGTCACAAAAAGTATTTTGAAATCTCTGCATTGTTTTGTGCTTT
CTTTAAGAATTCGGCTCAATGGCGTCCTCTCTTGCTCTCAAGAGGCTTGT
TTCTTTTAATCTCATCCCCAGGGCTTTACGCTGCACCGTCGCTCCTTCTG
CTACTTCGGCATCTCGGTTCTTCAACACAAACGCTGTTCGTCAATACGAT
GACGGCGGAGACGACCGTGATCTCGACATTGATCGCCGTTCCGCTCGCTC
TTTCCCTCGCCGTCGTGACGACTTCTTCTCAGATGTGTTTGATCCATTTT
CACCAACAAGGAGCCTGAGCCAGGTCCTGAACTTCATGGATCAGATGACG
GAGAGCCCTTTCTTCAGTGGCACGCGTGGTGGACTGCGCCGAGGCTGGGA
TGCCAAAGAAACCGATGACGCATTGAACCTCAGCATCGACATGCCAGGGC
TGGGCAAGGAAGACGTGAGAGTCTCTCTGGAGCAGAACACTCTGGTGATC
AGAGGCGAGGGCGGAAA
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