CX289186

Overview
NameCX289186
Unique NameCX289186
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length501
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289186 vs. ExPASy Swiss-Prot
Match: SNF12_ARATH (SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana GN=At5g14170 PE=1 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 3.041e-62
Identity = 116/163 (71.17%), Postives = 137/163 (84.05%), Query Frame = 2
Query:    2 FGEEKIKFATISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRYMNRK-SAGSDAAGS 487
            FGEEK+KF  +SQKIS           EHKIKLSGN+PA ++CYD+LVDVPFP+++++   LAN EKNKEI+ACDE ICA+I+KIHEHRRRRAFFLGFSQSP EFINALI SQSKDLK+VAG+ASRN E+E RSDFFNQPWVEDAVIRY+NR+ +AG+D  GS
Sbjct:  371 FGEEKLKFTMVSQKISHHLSPPPPIHLEHKIKLSGNNPAVSACYDVLVDVPFPIQRDLNNLLANAEKNKEIEACDEAICAAIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSKDLKVVAGEASRNAERERRSDFFNQPWVEDAVIRYLNRRPAAGNDGPGS 533          
BLAST of CX289186 vs. ExPASy Swiss-Prot
Match: SMRD3_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 OS=Mus musculus GN=Smarcd3 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 2.605e-21
Identity = 51/145 (35.17%), Postives = 89/145 (61.38%), Query Frame = 2
Query:   14 KIKFATISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRY 448
            ++KF+ I Q+++            H I +  +    T+CYD+ V+V  PL+ +M++FL +    +EI A D  I  +I+ I++ + +R F L FS+ P  ++  L+ SQS+DLK++  D + NPE+E R++F++QPW ++AV RY
Sbjct:  319 RLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMT-DVAGNPEEERRAEFYHQPWSQEAVSRY 462          
BLAST of CX289186 vs. ExPASy Swiss-Prot
Match: SMRD3_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 OS=Homo sapiens GN=SMARCD3 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.605e-21
Identity = 51/145 (35.17%), Postives = 89/145 (61.38%), Query Frame = 2
Query:   14 KIKFATISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRY 448
            ++KF+ I Q+++            H I +  +    T+CYD+ V+V  PL+ +M++FL +    +EI A D  I  +I+ I++ + +R F L FS+ P  ++  L+ SQS+DLK++  D + NPE+E R++F++QPW ++AV RY
Sbjct:  319 RLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMT-DVAGNPEEERRAEFYHQPWSQEAVSRY 462          
BLAST of CX289186 vs. ExPASy Swiss-Prot
Match: SMRD2_RAT (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Rattus norvegicus GN=Smarcd2 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.094e-19
Identity = 51/149 (34.23%), Postives = 86/149 (57.72%), Query Frame = 2
Query:   14 KIKFATISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRYMNRK 460
            +++F+ I  K++            H I +  N    T+CYD+ V+V  PL+ +M+ FLA+    +EI + D  I  +I+ I++ + +R F L FS  P +FI   + SQ +DLK++  D   NPE+E R+ F++QPW ++AV R++  K
Sbjct:  292 RLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTEPQDFIQEWLRSQRRDLKIIT-DVIGNPEEERRAAFYHQPWAQEAVGRHIFAK 439          
BLAST of CX289186 vs. ExPASy Swiss-Prot
Match: SMRD2_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Mus musculus GN=Smarcd2 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.094e-19
Identity = 51/149 (34.23%), Postives = 86/149 (57.72%), Query Frame = 2
Query:   14 KIKFATISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRYMNRK 460
            +++F+ I  K++            H I +  N    T+CYD+ V+V  PL+ +M+ FLA+    +EI + D  I  +I+ I++ + +R F L FS  P +FI   + SQ +DLK++  D   NPE+E R+ F++QPW ++AV R++  K
Sbjct:  292 RLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTEPQDFIQEWLRSQRRDLKIIT-DVIGNPEEERRAAFYHQPWAQEAVGRHIFAK 439          
BLAST of CX289186 vs. ExPASy Swiss-Prot
Match: SMRD2_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Homo sapiens GN=SMARCD2 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.094e-19
Identity = 51/149 (34.23%), Postives = 86/149 (57.72%), Query Frame = 2
Query:   14 KIKFATISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRYMNRK 460
            +++F+ I  K++            H I +  N    T+CYD+ V+V  PL+ +M+ FLA+    +EI + D  I  +I+ I++ + +R F L FS  P +FI   + SQ +DLK++  D   NPE+E R+ F++QPW ++AV R++  K
Sbjct:  292 RLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIIT-DVIGNPEEERRAAFYHQPWAQEAVGRHIFAK 439          
BLAST of CX289186 vs. ExPASy Swiss-Prot
Match: SMRD1_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Mus musculus GN=Smarcd1 PE=1 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 1.094e-19
Identity = 52/153 (33.99%), Postives = 84/153 (54.90%), Query Frame = 2
Query:    2 FGEEKIKFATISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRYMNRK 460
            F  +++KF+ I Q++             H I +  N    T+CYD+ V+V   L+ +M +FL +    +EI   D  I  +I+ I++ + +R F L F++ P  FIN  + SQ +DLK +  D   NPE+E R++F+ QPW ++AV RY   K
Sbjct:  347 FESQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMT-DVVGNPEEERRAEFYFQPWAQEAVCRYFYSK 498          
BLAST of CX289186 vs. ExPASy Swiss-Prot
Match: SMRD1_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Homo sapiens GN=SMARCD1 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.094e-19
Identity = 52/153 (33.99%), Postives = 84/153 (54.90%), Query Frame = 2
Query:    2 FGEEKIKFATISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRYMNRK 460
            F  +++KF+ I Q++             H I +  N    T+CYD+ V+V   L+ +M +FL +    +EI   D  I  +I+ I++ + +R F L F++ P  FIN  + SQ +DLK +  D   NPE+E R++F+ QPW ++AV RY   K
Sbjct:  347 FESQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMT-DVVGNPEEERRAEFYFQPWAQEAVCRYFYSK 498          
BLAST of CX289186 vs. ExPASy Swiss-Prot
Match: SMRD1_BOVIN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Bos taurus GN=SMARCD1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.695e-18
Identity = 50/153 (32.68%), Postives = 83/153 (54.25%), Query Frame = 2
Query:    2 FGEEKIKFATISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRYMNRK 460
            F  +++KF+ I Q++             H I +  N    T+CYD+  +V   L+ +M +FL +    +EI   D  I  +I+ I++ + +R F L F++ P  FIN  + SQ +DLK++  D   N E+E R++F+ QPW ++AV RY   K
Sbjct:  347 FESQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDEEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKVMT-DVVGNSEEERRAEFYFQPWAQEAVCRYFYSK 498          
BLAST of CX289186 vs. ExPASy Swiss-Prot
Match: SSR3_SCHPO (SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe GN=ssr3 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 39/151 (25.83%), Postives = 78/151 (51.66%), Query Frame = 2
Query:    2 FGEEKIKFATISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRYMN 454
            F  +++ F  I + +++           + I +S ++    + +D+ ++   P   ++ +FLA M    +I + D+ +   I+ I   + +  F   FS+SP EFIN  I SQS+DL++V    + N  ++  +D++ QPWV ++   Y+N
Sbjct:  258 FEADRLYFPRIPELMNRFLEPIDPIVIPYTINVSEHTVEKVTIFDIRINTEDPRHSQIRSFLATMMSQDKIRSIDDKLTELIQAITYSQSKYDFMKKFSESPIEFINEWIESQSRDLEIVLDGTNMNYAEKRSADYYQQPWVHESAFHYLN 408          
The following BLAST results are available for this feature:
BLAST of CX289186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
SNF12_ARATH3.041e-6271.17SWI/SNF complex component SNF12 homolog OS=Arabido... [more]
SMRD3_MOUSE2.605e-2135.17SWI/SNF-related matrix-associated actin-dependent ... [more]
SMRD3_HUMAN2.605e-2135.17SWI/SNF-related matrix-associated actin-dependent ... [more]
SMRD2_RAT1.094e-1934.23SWI/SNF-related matrix-associated actin-dependent ... [more]
SMRD2_MOUSE1.094e-1934.23SWI/SNF-related matrix-associated actin-dependent ... [more]
SMRD2_HUMAN1.094e-1934.23SWI/SNF-related matrix-associated actin-dependent ... [more]
SMRD1_MOUSE1.094e-1933.99SWI/SNF-related matrix-associated actin-dependent ... [more]
SMRD1_HUMAN1.094e-1933.99SWI/SNF-related matrix-associated actin-dependent ... [more]
SMRD1_BOVIN2.695e-1832.68SWI/SNF-related matrix-associated actin-dependent ... [more]
SSR3_SCHPO4.453e-1325.83SWI/SNF and RSC complexes subunit ssr3 OS=Schizosa... [more]

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Properties
Property NameValue
Genbank descriptionC02010B09SK IF1 Citrus clementina cDNA clone C02010B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289186 ID=CX289186; Name=CX289186; organism=Citrus clementina; type=EST; length=501bp
ATTTGGGGAAGAGAAGATTAAATTTGCTACGATTTCCCAGAAGATTTCAC
AGCATTTAATACCTCCACCACCTATACATTTGGAGCACAAGATAAAGCTT
TCAGGGAATAGCCCTGCTGGAACTTCTTGTTATGACATGCTTGTCGATGT
GCCTTTTCCACTAGAAAAGGAAATGGCTGCCTTTTTGGCAAACATGGAAA
AGAACAAAGAGATTGATGCTTGTGATGAACTAATATGTGCTTCTATAAAG
AAGATACATGAGCATCGCCGGAGGCGGGCTTTCTTTCTTGGTTTCAGTCA
GTCTCCAGGGGAGTTTATTAATGCTTTAATTGCTTCTCAAAGTAAGGATC
TAAAGCTTGTTGCTGGAGACGCTAGCCGTAATCCAGAAAAAGAGTGTCGG
TCTGATTTCTTTAATCAGCCATGGGTTGAAGACGCTGTCATCCGTTACAT
GAATCGCAAATCTGCTGGGAGTGATGCTGCTGGAAGCACTTAATATGGAT
A
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