CX289221

Overview
NameCX289221
Unique NameCX289221
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length384
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289221 vs. ExPASy Swiss-Prot
Match: CO058_HUMAN (UPF0580 protein C15orf58 OS=Homo sapiens GN=C15orf58 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.986e-12
Identity = 34/84 (40.48%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  127 PVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQ 378
            P +  D+ +   W+ RV+ GLFRY +   +T+++PG  GF+AQLN  R +++RP +  +  V Q FD  +FNF K+   EVLF+
Sbjct:   55 PQSPFDAALCSAWKQRVELGLFRYRLRELQTQILPGAVGFVAQLNVERGVQRRPPQ-TIKSVRQAFDPVQFNFNKIRPGEVLFR 137          
BLAST of CX289221 vs. ExPASy Swiss-Prot
Match: CO058_MOUSE (UPF0580 protein C15orf58 homolog OS=Mus musculus PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.799e-12
Identity = 33/86 (38.37%), Postives = 53/86 (61.63%), Query Frame = 1
Query:  127 PVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFE 384
            P++  DS +   W  R++ GLFRY +   +T+++PG  GF+AQLN  R +++R  +  +  V Q FD  +FNF K+   EVLF+ +
Sbjct:   55 PLSRFDSALRSAWRQRLELGLFRYRLEDLQTQILPGSVGFVAQLNIERGIQRRRPQ-NIRSVRQEFDPEQFNFNKIRPGEVLFRMQ 139          
BLAST of CX289221 vs. ExPASy Swiss-Prot
Match: CO058_BOVIN (UPF0580 protein C15orf58 homolog OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.160e-11
Identity = 33/85 (38.82%), Postives = 51/85 (60.00%), Query Frame = 1
Query:  124 PPVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQ 378
            PP++  DS +   W  R++ GLFRY +    T+ +PG  GF+AQLN  R +++R  +  +  V Q FD  +FNF ++   EVLF+
Sbjct:   54 PPLSHFDSALCSAWRQRMELGLFRYPLGELPTQTLPGTVGFVAQLNVERGVQRRCPQ-NIKSVRQEFDPEQFNFNQIRPGEVLFR 137          
BLAST of CX289221 vs. ExPASy Swiss-Prot
Match: CO058_XENTR (UPF0580 protein C15orf58 homolog OS=Xenopus tropicalis PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.374e-11
Identity = 36/118 (30.51%), Postives = 62/118 (52.54%), Query Frame = 1
Query:   43 LPLYAFKRVNKFKTEMGVHG------HEVREPEPPVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQ 378
            LP    +  N F+ +    G       E  E    ++  D  +  +WE+++  GLFRY +   +T+++PG   ++AQLN  R + +R  E  +  V Q F+ N+FN+ K+  EE++FQ
Sbjct:    8 LPNATVEEYNYFEEDFVFQGLSWKKRQEFAEDTSFLSPFDKALQSKWEEKMNEGLFRYPLRNVQTKILPGSVSYVAQLNIQRSINRRKPE-DIWSVQQKFNPNQFNYNKIKSEEIVFQ 124          
BLAST of CX289221 vs. ExPASy Swiss-Prot
Match: CO058_XENLA (UPF0580 protein C15orf58 homolog OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.755e-11
Identity = 33/99 (33.33%), Postives = 57/99 (57.58%), Query Frame = 1
Query:   91 GVHGHEVREPEPPVAFL---DSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQ 378
            G+   E R+     +FL   D  +  +WE ++  GLFRY +   +T+++PG   ++AQLN  R + +R  E  +  + Q F+ N+FN+ K+  EE++FQ
Sbjct:   28 GLSWKERRQYAEDTSFLSPFDKALQSKWEQKMNEGLFRYPLRNLQTKILPGSLSYVAQLNIQRSINRRKPE-DIWSIQQKFNPNQFNYNKIKPEEIVFQ 125          
BLAST of CX289221 vs. ExPASy Swiss-Prot
Match: CO058_MACFA (UPF0580 protein C15orf58 homolog OS=Macaca fascicularis GN=QflA-20034 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.755e-11
Identity = 32/84 (38.10%), Postives = 52/84 (61.90%), Query Frame = 1
Query:  127 PVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQ 378
            P +  D+ +   W+ RV+ GLFRY +   +T+++PG  GF+AQLN  R +++R  +  +  V Q FD  +FNF K+   EVL++
Sbjct:   55 PQSPFDAALCSAWKQRVELGLFRYRLRELQTQILPGVVGFVAQLNVERGVQRRRPQ-TIKSVRQAFDPEQFNFNKIQPGEVLYR 137          
The following BLAST results are available for this feature:
BLAST of CX289221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CO058_HUMAN3.986e-1240.48UPF0580 protein C15orf58 OS=Homo sapiens GN=C15orf... [more]
CO058_MOUSE6.799e-1238.37UPF0580 protein C15orf58 homolog OS=Mus musculus P... [more]
CO058_BOVIN1.160e-1138.82UPF0580 protein C15orf58 homolog OS=Bos taurus PE=... [more]
CO058_XENTR3.374e-1130.51UPF0580 protein C15orf58 homolog OS=Xenopus tropic... [more]
CO058_XENLA5.755e-1133.33UPF0580 protein C15orf58 homolog OS=Xenopus laevis... [more]
CO058_MACFA5.755e-1138.10UPF0580 protein C15orf58 homolog OS=Macaca fascicu... [more]
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Properties
Property NameValue
Genbank descriptionC02010E10SK IF1 Citrus clementina cDNA clone C02010E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289221 ID=CX289221; Name=CX289221; organism=Citrus clementina; type=EST; length=384bp
GGGAGGAATTGCTTGAACAAATGTTGCATTCAAGGTGCAAAGCTTCCTTT
ATATGCTTTCAAGAGGGTGAACAAGTTTAAAACTGAAATGGGTGTGCATG
GACACGAGGTTAGAGAGCCCGAGCCTCCCGTTGCATTTCTGGACTCGCTC
GTTCTTGGGGAGTGGGAGGACCGCGTACAGAGAGGACTATTTCGCTATGA
TGTTACTGCCTGTGAAACCAGGGTCATTCCTGGTCAGTATGGTTTCATTG
CTCAACTGAACGAGGGCCGCCACCTGAAGAAAAGGCCTACTGAGTTCCGT
GTTGATAAGGTCCTCCAGCCTTTTGATGGGAACAAGTTCAACTTTACCAA
AGTGGGGCAAGAAGAGGTGCTCTTCCAGTTTGAG
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