CX289280

Overview
NameCX289280
Unique NameCX289280
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length614
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289280 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.072e-17
Identity = 55/134 (41.04%), Postives = 72/134 (53.73%), Query Frame = 3
Query:  231 DDDSSVEEPRSRARP-----CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF-SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSW 614
            +++  +EE   R          LYV NLP S   S+L E+F   GTV +VE+  +  T  SRG  ++TMGS+  AK AI   DGS VGGR ++V F  +          A I    + FV +SPHKLYV NLSW
Sbjct:   94 EEEEEIEEKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFV-DSPHKLYVANLSW 226          
BLAST of CX289280 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.881e-12
Identity = 43/131 (32.82%), Postives = 65/131 (49.62%), Query Frame = 3
Query:  222 NEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSW 614
            +EV+ D   EE +      +L+V NLP   D   L  +F+  G V   EV  N +T  SRG G++TM ++  A+ A+   +  DV GR + V      N   R  E    PP+    +E  +++YVGN+ W
Sbjct:  118 DEVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTV------NKAARRGERPERPPR---TFEQSYRIYVGNIPW 239          
BLAST of CX289280 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.812e-11
Identity = 43/128 (33.59%), Postives = 68/128 (53.12%), Query Frame = 3
Query:  231 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSW 614
            D D  VEE R+ +   +++V NLP S D + L E+F+  G V  VEV  +  TG SRG G++TM S    + A    +G ++ GR +RV        R  +  +     +    ++S +++YVGNL+W
Sbjct:   72 DGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENS--SFRGGSRGGGSFDSSNRVYVGNLAW 197          
The following BLAST results are available for this feature:
BLAST of CX289280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ROC5_NICSY6.072e-1741.0433 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC4_NICSY5.881e-1232.8231 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_NICSY3.812e-1133.5929 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
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Properties
Property NameValue
Genbank descriptionC02011B11SK IF1 Citrus clementina cDNA clone C02011B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289280 ID=CX289280; Name=CX289280; organism=Citrus clementina; type=EST; length=614bp
TAACAACTTCTTCCTCTCTGTTCACAAAAATTACTCCTCCAGCTACACCA
AAACGATTCGGTTTTACCTCTCTGCCAACTTTAATTAATTTCCAGTACCC
AAAGCTCTCATCTTGCTGGTCCCGCTCTCACCCAGCTGGGTTTCGCTCAG
TTCTTGCGGTGGTAGATGAGGAAGCGGTAGTAGTTGAAGATGAGATTAAC
GGCAAGGATAATGTTGGTGGAAACGAAGTGGACGACGACAGTTCAGTCGA
AGAGCCAAGGAGCCGCGCAAGGCCCTGTGAGTTATACGTGTGTAACTTGC
CCAGGAGCTTTGACATTTCAGAGCTTCTTGAGATGTTCAAGCCTTTTGGA
ACCGTTCTTTCCGTTGAGGTTTCGAGGAATCCCGAAACAGGCATAAGTCG
TGGATGCGGTTACCTGACAATGGGTTCGATCAATTCAGCAAAAAATGCAA
TTATTGCATTGGACGGATCTGATGTGGGTGGACGTGAAATGCGGGTGAGA
TTTTCAATTGATATGAATTCGCGGACTAGGAATGCTGAGGCATTGATTTC
ACCACCAAAGAAGATTTTTGTCTATGAAAGCCCTCATAAATTATATGTTG
GCAATCTTTCCTGG
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