CX289318

Overview
NameCX289318
Unique NameCX289318
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289318 vs. ExPASy Swiss-Prot
Match: EF1B2_ARATH (Elongation factor 1-beta 2 OS=Arabidopsis thaliana GN=At5g19510 PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 1.873e-49
Identity = 101/191 (52.88%), Postives = 121/191 (63.35%), Query Frame = 3
Query:   12 MAITFSDLHTESGLKSLDQYLSGKSYISGDQLTKDDIKVYAAVLKKPAGSFPNASRWYDSVSSHIAPSFPGKAVGVRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIID 584
            MA+TFSDLHTE G+KS++++L+GK+YISGDQL+ DD+KVYAAV  KP+ +FPNAS+WY+SV+S +A SFPGKAVGV+                                                            VL+DVKPWDDETDMKKLEEAVR VEMPGLFWGASKLVPVGYGIKK+ IM TI+D
Sbjct:    1 MAVTFSDLHTEEGVKSVEEHLAGKTYISGDQLSVDDVKVYAAVPVKPSDAFPNASKWYESVASQLAKSFPGKAVGVQFGGSAAAAPAVEAEAPAAAADDDDDMDLFGDETEEEKKAAEEREAAKKDTKKPKESGKSSVLMDVKPWDDETDMKKLEEAVRGVEMPGLFWGASKLVPVGYGIKKLTIMFTIVD 191          
BLAST of CX289318 vs. ExPASy Swiss-Prot
Match: EF1B1_ARATH (Elongation factor 1-beta 1 OS=Arabidopsis thaliana GN=At5g12110 PE=2 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 2.991e-47
Identity = 102/195 (52.31%), Postives = 119/195 (61.03%), Query Frame = 3
Query:   12 MAITFSDLHTESGLKSLDQYLSGKSYISGDQLTKDDIKVYAAVLKKPAGSFPNASRWYDSVSSHIAPSFP----GKAVGVRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIID 584
            MA+TFSDLHTE GLK+L+++L+GK+YISGDQL+ DD+KVYAAVL+ P   FPNAS+WYDSV+SH+A SFP    G  VG  V                                                           VLL+VKPWDDETDMKKLEEAVRSV+MPGL WGASKLVPVGYGIKK+ IMMTI+D
Sbjct:    1 MAVTFSDLHTERGLKTLEEHLAGKTYISGDQLSVDDVKVYAAVLENPGDGFPNASKWYDSVASHLAKSFPGKADGVRVGGGVAPPSEAHPHTEEPAADGDGDDDDDIDLFADETEDEKKAAEEREAAKKDTKKTKESGKSSVLLEVKPWDDETDMKKLEEAVRSVQMPGLTWGASKLVPVGYGIKKLTIMMTIVD 195          
BLAST of CX289318 vs. ExPASy Swiss-Prot
Match: EF1B_ORYSJ (Elongation factor 1-beta OS=Oryza sativa subsp. japonica GN=Os07g0662500 PE=1 SV=3)

HSP 1 Score: 186.808 bits (473), Expect = 6.662e-47
Identity = 97/191 (50.79%), Postives = 118/191 (61.78%), Query Frame = 3
Query:   12 MAITFSDLHTESGLKSLDQYLSGKSYISGDQLTKDDIKVYAAVLKKPAGSFPNASRWYDSVSSHIAPSFPGKAVGVRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIID 584
            MA+TF+DLHT  GLK+L+Q+LSGK+Y+SG+ ++KDDIKV+AAV  KP   FPNA+RWYD+V++ +A  FPGKAVGV +                                                           VLLDVKPWDDETDMKKLEEAVRSV+M GL WGASKLVPVGYGIKK+QIM+TI+D
Sbjct:    1 MAVTFTDLHTADGLKALEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAAALASRFPGKAVGVNLPGGGAASSAAAAAPAAKDADEDDDDLDLFGDETEEDKKAADERAASKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKLQIMLTIVD 191          
BLAST of CX289318 vs. ExPASy Swiss-Prot
Match: EF1B_WHEAT (Elongation factor 1-beta OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 8.762e-23
Identity = 47/76 (61.84%), Postives = 64/76 (84.21%), Query Frame = 3
Query:   12 MAITFSDLHTESGLKSLDQYLSGKSYISGDQLTKDDIKVYAAVLKKPAGSFPNASRWYDSVSSHIAPSFPGKAVGV 239
            MA+TFSDLHT  GLK+L+ +L+GK+YISGD +TKDD+KV+AAV  KP+  FPNA+RWYD+V++ ++  FPG+A GV
Sbjct:    1 MAVTFSDLHTADGLKALEAHLAGKTYISGDGITKDDVKVFAAVPLKPSAEFPNAARWYDTVAAAVSSRFPGQASGV 76          

HSP 2 Score: 100.908 bits (250), Expect = 4.808e-21
Identity = 46/54 (85.19%), Postives = 52/54 (96.30%), Query Frame = 3
Query:  423 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIID 584
            VL+D+KPWDDETDMKKLEEAVRSV+M GL WGASKL+PVGYGIKK+QIM+TIID
Sbjct:  132 VLMDIKPWDDETDMKKLEEAVRSVQMEGLTWGASKLMPVGYGIKKLQIMLTIID 185          
BLAST of CX289318 vs. ExPASy Swiss-Prot
Match: EF1D2_ARATH (Elongation factor 1-delta 2 OS=Arabidopsis thaliana GN=At2g18110 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.681e-21
Identity = 45/54 (83.33%), Postives = 51/54 (94.44%), Query Frame = 3
Query:  423 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIID 584
            VL+D+KPWDDETDMKKLEEAVRS++M GLFWGASKLVPVGYGIKK+ IM TI+D
Sbjct:  145 VLMDIKPWDDETDMKKLEEAVRSIQMEGLFWGASKLVPVGYGIKKLHIMCTIVD 198          
BLAST of CX289318 vs. ExPASy Swiss-Prot
Match: EF1D2_ORYSJ (Elongation factor 1-delta 2 OS=Oryza sativa subsp. japonica GN=Os03g0406200 PE=2 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 4.808e-21
Identity = 47/54 (87.04%), Postives = 51/54 (94.44%), Query Frame = 3
Query:  423 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIID 584
            VLLDVKPWDDETDM KLEEAVR+V+M GL WGASKLVPVGYGIKK+QIMMTI+D
Sbjct:  140 VLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVD 193          

HSP 2 Score: 71.633 bits (174), Expect = 3.124e-12
Identity = 35/79 (44.30%), Postives = 55/79 (69.62%), Query Frame = 3
Query:   12 MAITFSDLHTESGLKSLDQYLSGKSYISGDQLTKDDIKVYAAVLKKPAGSFPNASRWYDSVSSHIAPS-FPGKAVGVRV 245
            MAIT S++++E+GL+ LD+YL  +SYISG Q +KDD+ V+ ++   PA S+ N +RWYD +S+ +  S    +  GV+V
Sbjct:    1 MAITLSNVNSEAGLQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHISALLRSSGVTAEGEGVKV 79          
BLAST of CX289318 vs. ExPASy Swiss-Prot
Match: EF1D1_ORYSJ (Elongation factor 1-delta 1 OS=Oryza sativa subsp. japonica GN=Os07g0614500 PE=2 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 4.808e-21
Identity = 47/54 (87.04%), Postives = 51/54 (94.44%), Query Frame = 3
Query:  423 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIID 584
            VLLDVKPWDDETDM KLEEAVR+V+M GL WGASKLVPVGYGIKK+QIMMTI+D
Sbjct:  143 VLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVD 196          
BLAST of CX289318 vs. ExPASy Swiss-Prot
Match: EF1D1_ARATH (Elongation factor 1-delta 1 OS=Arabidopsis thaliana GN=At1g30230 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 4.808e-21
Identity = 44/54 (81.48%), Postives = 52/54 (96.30%), Query Frame = 3
Query:  423 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIID 584
            VL+D+KPWDDETDMKKLEEAV+S++M GLFWGASKLVPVGYGIKK+QI+ TI+D
Sbjct:  145 VLIDIKPWDDETDMKKLEEAVKSIQMEGLFWGASKLVPVGYGIKKLQILCTIVD 198          
BLAST of CX289318 vs. ExPASy Swiss-Prot
Match: EF1D_PIMBR (Elongation factor 1-delta OS=Pimpinella brachycarpa PE=2 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 5.316e-20
Identity = 45/54 (83.33%), Postives = 50/54 (92.59%), Query Frame = 3
Query:  423 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIID 584
            VLLDVKPWDDETDM KLEEAVRS++M GL WGASKLV VGYGIKK+QIM+TI+D
Sbjct:  140 VLLDVKPWDDETDMTKLEEAVRSIKMDGLLWGASKLVAVGYGIKKLQIMLTIVD 193          

HSP 2 Score: 74.3294 bits (181), Expect = 4.819e-13
Identity = 33/63 (52.38%), Postives = 47/63 (74.60%), Query Frame = 3
Query:   12 MAITFSDLHTESGLKSLDQYLSGKSYISGDQLTKDDIKVYAAVLKKPAGSFPNASRWYDSVSS 200
            MA+TF DL +E+GL+ LD+YL  +SYISG Q +KDD+ V+AA+ K P+  + N SRWY+ V +
Sbjct:    1 MAVTFYDLSSEAGLEKLDEYLLSRSYISGYQASKDDLAVHAALAKPPSSKYVNVSRWYNHVEA 63          
BLAST of CX289318 vs. ExPASy Swiss-Prot
Match: EF1D_BETVU (Elongation factor 1-delta OS=Beta vulgaris PE=2 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 3.446e-19
Identity = 46/54 (85.19%), Postives = 49/54 (90.74%), Query Frame = 3
Query:  423 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIID 584
            VLLDVKPWDDETDMKKLEEAVRSV+  GL  GASKLVPVGYGIKK+ IMMTI+D
Sbjct:  145 VLLDVKPWDDETDMKKLEEAVRSVQQEGLTLGASKLVPVGYGIKKLTIMMTIVD 198          

HSP 2 Score: 70.0922 bits (170), Expect = 9.088e-12
Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 3
Query:   12 MAITFSDLHTESGLKSLDQYLSGKSYISGDQLTKDDIKVYAAVLKKPAGSFPNASRWYDSVSSHIAPS-FPGKAVGVRV 245
            MA+TFSDL + +GL SLD YL  +SYI+G Q +KDD+ V++AV K    S+ N SRWY  + + +  S   G+  GV V
Sbjct:    1 MAVTFSDLSSPAGLDSLDAYLLSRSYITGYQASKDDLTVFSAVPKASLASYVNVSRWYKHIDALLRISGVSGEGSGVTV 79          
The following BLAST results are available for this feature:
BLAST of CX289318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
EF1B2_ARATH1.873e-4952.88Elongation factor 1-beta 2 OS=Arabidopsis thaliana... [more]
EF1B1_ARATH2.991e-4752.31Elongation factor 1-beta 1 OS=Arabidopsis thaliana... [more]
EF1B_ORYSJ6.662e-4750.79Elongation factor 1-beta OS=Oryza sativa subsp. ja... [more]
EF1B_WHEAT8.762e-2361.84Elongation factor 1-beta OS=Triticum aestivum PE=1... [more]
EF1D2_ARATH3.681e-2183.33Elongation factor 1-delta 2 OS=Arabidopsis thalian... [more]
EF1D2_ORYSJ4.808e-2187.04Elongation factor 1-delta 2 OS=Oryza sativa subsp.... [more]
EF1D1_ORYSJ4.808e-2187.04Elongation factor 1-delta 1 OS=Oryza sativa subsp.... [more]
EF1D1_ARATH4.808e-2181.48Elongation factor 1-delta 1 OS=Arabidopsis thalian... [more]
EF1D_PIMBR5.316e-2083.33Elongation factor 1-delta OS=Pimpinella brachycarp... [more]
EF1D_BETVU3.446e-1985.19Elongation factor 1-delta OS=Beta vulgaris PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionC02011F06SK IF1 Citrus clementina cDNA clone C02011F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289318 ID=CX289318; Name=CX289318; organism=Citrus clementina; type=EST; length=586bp
TGAAGACTAAAATGGCCATCACCTTTTCAGATCTCCACACAGAGTCAGGC
CTTAAGTCTCTCGATCAGTATCTTTCTGGGAAATCTTATATCTCCGGTGA
TCAACTGACAAAAGATGACATCAAGGTCTACGCTGCCGTTTTGAAGAAAC
CTGCCGGTTCTTTCCCCAACGCCAGCAGGTGGTACGACAGCGTTTCTTCA
CATATCGCCCCAAGCTTCCCTGGCAAAGCCGTTGGTGTGAGAGTTGATGG
CAAAGGTGCTCCAGTTGACGCCGCCCCAGCCAAGCCTGCTGCTGCTGGAG
GTGGTGATGATGATGATTTGGATCTCTTCGGAGATGAGACTGAGGAGGAT
AAGAAAGCAGCAGAGGAGAGGGAGGCTGCTAAAAAGCAATCATCCAAGAA
GAAAGAGAGTGGAAAATCATCGGTACTTTTGGATGTAAAGCCTTGGGATG
ACGAGACAGACATGAAAAAGCTAGAAGAGGCAGTTAGGAGTGTTGAGATG
CCGGGTCTCTTTTGGGGAGCATCAAAATTGGTCCCAGTCGGTTATGGGAT
TAAGAAGATGCAGATCATGATGACAATCATTGATGA
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