CX289320 | Citrus Genome Database

Overview


Name	CX289320
Unique Name	CX289320
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	430

Libraries


Library Name	Type
IF1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.567e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3

Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF GKQLEDGRTLADYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 95.9005 bits (237), Expect = 7.067e-20
Identity = 48/51 (94.12%), Postives = 48/51 (94.12%), Query Frame = 3

Query:  276 MQIFVKTLTGKTITLEVESSDTIDNVKANIQDKEGIPPDQHRLIFAGKHLE 428
            MQIFVKTLTGKTITLEVESSDTIDNVKA IQDKEGIPPDQ RLIFAGK LE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 51

BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.567e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3

Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF GKQLEDGRTLADYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 95.9005 bits (237), Expect = 7.067e-20
Identity = 48/51 (94.12%), Postives = 48/51 (94.12%), Query Frame = 3

Query:  276 MQIFVKTLTGKTITLEVESSDTIDNVKANIQDKEGIPPDQHRLIFAGKHLE 428
            MQIFVKTLTGKTITLEVESSDTIDNVKA IQDKEGIPPDQ RLIFAGK LE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 51

BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.567e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3

Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF GKQLEDGRTLADYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 95.9005 bits (237), Expect = 7.067e-20
Identity = 48/51 (94.12%), Postives = 48/51 (94.12%), Query Frame = 3

Query:  276 MQIFVKTLTGKTITLEVESSDTIDNVKANIQDKEGIPPDQHRLIFAGKHLE 428
            MQIFVKTLTGKTITLEVESSDTIDNVKA IQDKEGIPPDQ RLIFAGK LE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 51

BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.567e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3

Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF GKQLEDGRTLADYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 95.9005 bits (237), Expect = 7.067e-20
Identity = 48/51 (94.12%), Postives = 48/51 (94.12%), Query Frame = 3

Query:  276 MQIFVKTLTGKTITLEVESSDTIDNVKANIQDKEGIPPDQHRLIFAGKHLE 428
            MQIFVKTLTGKTITLEVESSDTIDNVKA IQDKEGIPPDQ RLIFAGK LE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 51

BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.567e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3

Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF GKQLEDGRTLADYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 95.9005 bits (237), Expect = 7.067e-20
Identity = 48/51 (94.12%), Postives = 48/51 (94.12%), Query Frame = 3

Query:  276 MQIFVKTLTGKTITLEVESSDTIDNVKANIQDKEGIPPDQHRLIFAGKHLE 428
            MQIFVKTLTGKTITLEVESSDTIDNVKA IQDKEGIPPDQ RLIFAGK LE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 51

BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.567e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3

Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF GKQLEDGRTLADYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 95.9005 bits (237), Expect = 7.067e-20
Identity = 48/51 (94.12%), Postives = 48/51 (94.12%), Query Frame = 3

Query:  276 MQIFVKTLTGKTITLEVESSDTIDNVKANIQDKEGIPPDQHRLIFAGKHLE 428
            MQIFVKTLTGKTITLEVESSDTIDNVKA IQDKEGIPPDQ RLIFAGK LE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 51

BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.567e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3

Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF GKQLEDGRTLADYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 95.9005 bits (237), Expect = 7.067e-20
Identity = 48/51 (94.12%), Postives = 48/51 (94.12%), Query Frame = 3

Query:  276 MQIFVKTLTGKTITLEVESSDTIDNVKANIQDKEGIPPDQHRLIFAGKHLE 428
            MQIFVKTLTGKTITLEVESSDTIDNVKA IQDKEGIPPDQ RLIFAGK LE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 51

BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.567e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3

Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF GKQLEDGRTLADYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 95.9005 bits (237), Expect = 7.067e-20
Identity = 48/51 (94.12%), Postives = 48/51 (94.12%), Query Frame = 3

Query:  276 MQIFVKTLTGKTITLEVESSDTIDNVKANIQDKEGIPPDQHRLIFAGKHLE 428
            MQIFVKTLTGKTITLEVESSDTIDNVKA IQDKEGIPPDQ RLIFAGK LE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 51

BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.567e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3

Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF GKQLEDGRTLADYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 95.9005 bits (237), Expect = 7.067e-20
Identity = 48/51 (94.12%), Postives = 48/51 (94.12%), Query Frame = 3

Query:  276 MQIFVKTLTGKTITLEVESSDTIDNVKANIQDKEGIPPDQHRLIFAGKHLE 428
            MQIFVKTLTGKTITLEVESSDTIDNVKA IQDKEGIPPDQ RLIFAGK LE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 51

BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPPO (Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.567e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3

Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF GKQLEDGRTLADYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 95.9005 bits (237), Expect = 7.067e-20
Identity = 48/51 (94.12%), Postives = 48/51 (94.12%), Query Frame = 3

Query:  276 MQIFVKTLTGKTITLEVESSDTIDNVKANIQDKEGIPPDQHRLIFAGKHLE 428
            MQIFVKTLTGKTITLEVESSDTIDNVKA IQDKEGIPPDQ RLIFAGK LE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 51

The following BLAST results are available for this feature:

BLAST of CX289320 vs. ExPASy Swiss-Prot

BLAST of CX289320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93


Match Name	E-value	Identity	Description
UBIQ_WHEAT	1.567e-35	97.37	Ubiquitin OS=Triticum aestivum PE=3 SV=1	[more]
UBIQ_SOYBN	1.567e-35	97.37	Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1	[more]
UBIQ_SOLTU	1.567e-35	97.37	Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1	[more]
UBIQ_SOLLC	1.567e-35	97.37	Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=...	[more]
UBIQ_PETCR	1.567e-35	97.37	Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3...	[more]
UBIQ_PEA	1.567e-35	97.37	Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1	[more]
UBIQ_ORYSJ	1.567e-35	97.37	Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ...	[more]
UBIQ_NICSY	1.567e-35	97.37	Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE...	[more]
UBIQ_MAIZE	1.567e-35	97.37	Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1	[more]
UBIQ_LUPPO	1.567e-35	97.37	Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	C02011F08SK IF1 Citrus clementina cDNA clone C02011F08, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX289320 ID=CX289320; Name=CX289320; organism=Citrus clementina; type=EST; length=430bp
AACATACTTAGTTTAGATACCAAGGCTCCCAATCTCATCCTTACAACATG
CAGATCTTTGTGAAAACTTTGACCGGCAAGACCATCACTCTCGAGGTGGA
GAGCTCCGACACGATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAAG
GGATTCCACCGGACCAGCAGCGGCTGATCTTCACCGGAAAGCAGCTCGAG
GACGGGCGCACCTTGGCGGATTACAACATCCAGAAGGAGTCGACTCTCCA
CCTCGTCCTCCGTGTTCGCGGCGGCATGCAGATCTTCGTCAAGACTCTGA
CCGGGAAGACGATCACCCTGGAGGTGGAGAGCTCCGACACGATCGACAAC
GTGAAGGCGAATATCCAGGACAAGGAAGGGATCCCCCCGGACCAGCATAG
GCTCATCTTCGCCGGCAAGCATCTGGAGGA