CX289322

Overview
NameCX289322
Unique NameCX289322
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length595
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289322 vs. ExPASy Swiss-Prot
Match: BRP16_RAT (Brain protein 16 OS=Rattus norvegicus GN=Brp16 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.132e-15
Identity = 54/168 (32.14%), Postives = 96/168 (57.14%), Query Frame = 2
Query:    8 HVGSILVNISKKEAGRKILLDPKRGLLKQIV--RQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLRAFWSVNGPRVLQVGYEDEGDPKVMEAYEQVGSLLV 505
            ++G +L N+S++   R  LLDP R ++++++   Q+  S+ +R+ GV GT+RNCCFE  H  + LL     + P LLLP+AG + + EE+  ++P++L   L  +++   D +IR   +E+I L+T    G +         +L+  Y  E +P V  A E++  +L+
Sbjct:  182 YLGPLLSNLSQQAEVRAFLLDPDRCVVQRLLPLTQYTDSS-VRRGGVVGTLRNCCFEHRHH-KWLLGPQVDILPFLLLPLAGPEEFSEEEMEELPVDL-QYLSPDKQREPDADIRKMLIEAIMLLTATAPGRKQVRDQGAYLILRELYAWESEPDVRMACEKLIQVLI 346          
BLAST of CX289322 vs. ExPASy Swiss-Prot
Match: BRP16_HUMAN (Brain protein 16 OS=Homo sapiens GN=BRP16 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.202e-14
Identity = 53/168 (31.55%), Postives = 96/168 (57.14%), Query Frame = 2
Query:    8 HVGSILVNISKKEAGRKILLDPKRGLLKQIV--RQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLRAFWSVNGPRVLQVGYEDEGDPKVMEAYEQVGSLLV 505
            ++  +L N+S++ A R  LLDP R ++++++   Q+  S+ +R+ GV GT+RNCCFE  H  + LL     + P LLLP+AG + + EE+  ++P++L   L  +++   D +IR   +E+I L+T    G +         +L+  +  E +P V  A E++  +L+
Sbjct:  175 YLAPLLSNLSQRPAARAFLLDPDRCVVQRLLPLTQYPDSS-VRRGGVVGTLRNCCFEHRHH-EWLLGPEVDILPFLLLPLAGPEDFSEEEMERLPVDL-QYLPPDKQREPDADIRKMLVEAIMLLTATAPGRQQVRDQGAYLILRELHSWEPEPDVRTACEKLIQVLI 339          
BLAST of CX289322 vs. ExPASy Swiss-Prot
Match: BP16L_HUMAN (Brain protein 16-like OS=Homo sapiens GN=BRP16L PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.202e-14
Identity = 53/168 (31.55%), Postives = 96/168 (57.14%), Query Frame = 2
Query:    8 HVGSILVNISKKEAGRKILLDPKRGLLKQIV--RQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLRAFWSVNGPRVLQVGYEDEGDPKVMEAYEQVGSLLV 505
            ++  +L N+S++ A R  LLDP R ++++++   Q+  S+ +R+ GV GT+RNCCFE  H  + LL     + P LLLP+AG + + EE+  ++P++L   L  +++   D +IR   +E+I L+T    G +         +L+  +  E +P V  A E++  +L+
Sbjct:  175 YLAPLLSNLSQRPAARAFLLDPDRCVVQRLLPLTQYPDSS-VRRGGVVGTLRNCCFEHRHH-EWLLGPEVDILPFLLLPLAGPEDFSEEEMQRLPVDL-QYLPPDKQREPDADIRKMLVEAIMLLTATAPGRQQVRDQGAYLILRELHSWEPEPDVRTACEKLIQVLI 339          
BLAST of CX289322 vs. ExPASy Swiss-Prot
Match: BRP16_MOUSE (Brain protein 16 OS=Mus musculus GN=Brp16 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.570e-14
Identity = 52/168 (30.95%), Postives = 96/168 (57.14%), Query Frame = 2
Query:    8 HVGSILVNISKKEAGRKILLDPKRGLLKQIV--RQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLRAFWSVNGPRVLQVGYEDEGDPKVMEAYEQVGSLLV 505
            ++G +L N+S++   R  LLDP R ++++++   Q+  S+ +R+ GV GT+RNCCFE  H  + LL     + P LLLP+AG + + EE+  ++P++L   L  +++   D +IR   +E++ L+T    G +         +L+  +  E +P V  A E++  +L+
Sbjct:  182 YLGPLLSNLSQQAEVRAFLLDPDRCVVQRLLPLTQYTDSS-VRRGGVVGTLRNCCFEHRHH-KWLLGAQVDILPFLLLPLAGPEEFSEEEMDQLPVDL-QYLSPDKQREPDADIRKMLIEAVMLLTATAPGRKQVRDQGAYLILRELHSWEPEPDVRMACEKLIQVLI 346          
BLAST of CX289322 vs. ExPASy Swiss-Prot
Match: BRP16_DANRE (Brain protein 16 OS=Danio rerio GN=brp16 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.678e-14
Identity = 51/168 (30.36%), Postives = 96/168 (57.14%), Query Frame = 2
Query:    8 HVGSILVNISKKEAGRKILLDPKRGLLKQIV--RQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLRAFWSVNGPRVLQVGYEDEGDPKVMEAYEQVGSLLV 505
            ++  +L N+++    R  +LD  R ++++++   Q++ S   R+ GV GT+RNCCF+  H  + LL  +  + P LLLP+AG +   EE+   +P++L   L  ++   +DP+IR   LE++ L+T  + G +   S N   +++  ++ E DP V+ A E++   L+
Sbjct:  158 YLAPLLSNLTQLPEARHFILDKDRCVIQRLLPFTQYEES-ITRRGGVVGTLRNCCFDYVHH-EWLLSDAVDILPFLLLPLAGPEELSEEENEGLPVDL-QYLPEDKRREEDPDIRKMLLETLMLLTATKVGRQILKSKNVYPIMREFHKWEKDPHVISACEKLVQALI 322          
BLAST of CX289322 vs. ExPASy Swiss-Prot
Match: BRP16_XENTR (Brain protein 16 OS=Xenopus tropicalis GN=brp16 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.018e-13
Identity = 49/168 (29.17%), Postives = 92/168 (54.76%), Query Frame = 2
Query:    5 EHVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEF-LWPALLLPVAGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLRAFWSVNGPRVLQVGYEDEGDPKVMEAYEQVGSLLV 505
            +++G +L N+++   GR  +LD  R ++++++    S + +R+ G+ GT+RNCCF   H+    LL  +  L P LLLP+AG + + EE+   +P +L   L  +++   DP+IR   +E++ L+     G R         V++  +  E +P V  A E++  +L+
Sbjct:  155 DYLGPLLCNLTQLPEGRHFILDRNRCVVQRLLPYLQSGSTVRRGGIVGTLRNCCF--SHRDHAWLLGDDVDLLPFLLLPLAGGEEFTEEEMETLPPDL-QYLAEDKQREADPDIRKMLIETVLLLCATADGRRLVKQRGTYLVMRELHSWEREPCVKRACEKLIQMLI 319          
BLAST of CX289322 vs. ExPASy Swiss-Prot
Match: BRP16_XENLA (Brain protein 16 OS=Xenopus laevis GN=brp16 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.329e-13
Identity = 47/168 (27.98%), Postives = 91/168 (54.17%), Query Frame = 2
Query:    5 EHVGSILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEF-LWPALLLPVAGNKVYKEEDTSKIPLELASALRIEREPVDDPEIRIQALESIYLITLQEAGLRAFWSVNGPRVLQVGYEDEGDPKVMEAYEQVGSLLV 505
            +++G ++ N+++   GR  +LD  R ++++++    + + +RK G+ GT+RNCCF   H+    LL  +  L P LLLP+AG + Y +E+   +P +L   L  ++E   DP+IR   +E++ L+     G R         +++  +  E +  V  A E++  +L+
Sbjct:  155 DYLGPLVCNLTQLPEGRDFILDRDRCVIQRLLPYVTAGSTVRKGGIVGTLRNCCF--NHRDHEWLLSDQVDLLPFLLLPLAGGEEYTDEEMESLPPDL-QYLPEDKERESDPDIRKMLIETVQLLCATAGGRRIVRQKGTYLIMRELHSWERESYVSRACEKLIQVLI 319          
BLAST of CX289322 vs. ExPASy Swiss-Prot
Match: U570_DICDI (UPF0570 protein OS=Dictyostelium discoideum GN=DDB_G0276861 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.625e-11
Identity = 43/164 (26.22%), Postives = 87/164 (53.05%), Query Frame = 2
Query:   17 SILVNISKKEAGRKILLDPKRGLLKQIVRQFDSSNYLRKKGVSGTIRNCCFEAEHQLQNLLLISEFLWPALLLPVAGNKVYKEEDTSKIPLEL-ASALRIEREPVDDPEIRIQALESIYLITLQEAGLRAFWSVNGPRVLQVGYEDEGDPKVMEAYEQVGSLLV 505
            +I++N+++ + GRKI+LD +  + K+I+      N ++++G+ G IRNCC+  +H    L+     +   L LP+ GN    ++D   + ++L  S+L I  E   D E R   +ES+  +T  + G  +  +     +L+  +  E + ++ +  E+V  L++
Sbjct:  160 NIILNVTQIQEGRKIVLDKENQIFKEILPLVRHENVIKRRGILGIIRNCCYSEQHH-DYLISPEVDILTKLCLPIRGNDKLDDDDLVGLHIDLHNSSLPIGNERDQDRECRKMVVESLIFLTGTKKGRVSMRTAKIYPILRNLFNFETEEELRDNVEKVVELII 322          
The following BLAST results are available for this feature:
BLAST of CX289322 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
BRP16_RAT4.132e-1532.14Brain protein 16 OS=Rattus norvegicus GN=Brp16 PE=... [more]
BRP16_HUMAN1.202e-1431.55Brain protein 16 OS=Homo sapiens GN=BRP16 PE=1 SV=... [more]
BP16L_HUMAN1.202e-1431.55Brain protein 16-like OS=Homo sapiens GN=BRP16L PE... [more]
BRP16_MOUSE1.570e-1430.95Brain protein 16 OS=Mus musculus GN=Brp16 PE=2 SV=... [more]
BRP16_DANRE2.678e-1430.36Brain protein 16 OS=Danio rerio GN=brp16 PE=2 SV=1[more]
BRP16_XENTR1.018e-1329.17Brain protein 16 OS=Xenopus tropicalis GN=brp16 PE... [more]
BRP16_XENLA1.329e-1327.98Brain protein 16 OS=Xenopus laevis GN=brp16 PE=2 S... [more]
U570_DICDI1.625e-1126.22UPF0570 protein OS=Dictyostelium discoideum GN=DDB... [more]
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Properties
Property NameValue
Genbank descriptionC02011F10SK IF1 Citrus clementina cDNA clone C02011F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289322 ID=CX289322; Name=CX289322; organism=Citrus clementina; type=EST; length=595bp
ATTTGAACATGTTGGTTCTATACTAGTAAACATATCAAAGAAAGAAGCAG
GGAGGAAAATTTTACTGGATCCAAAACGAGGACTACTGAAGCAGATTGTT
AGACAGTTTGATTCAAGCAATTACTTGCGAAAAAAAGGGGTCTCAGGAAC
CATTCGAAACTGCTGTTTTGAAGCTGAGCATCAGCTGCAGAATTTGCTTC
TGATTTCAGAGTTTCTTTGGCCAGCTCTACTTCTGCCTGTTGCTGGCAAC
AAGGTATACAAGGAAGAAGACACATCAAAAATACCTCTTGAGCTTGCAAG
TGCACTCAGGATCGAGCGTGAACCAGTTGATGATCCAGAAATTCGTATTC
AGGCACTAGAGTCTATTTACTTGATAACATTACAGGAAGCTGGCCTGAGA
GCCTTTTGGTCAGTCAATGGTCCACGGGTACTGCAAGTTGGCTATGAAGA
CGAGGGAGATCCAAAAGTAATGGAAGCATACGAGCAAGTTGGCTCCTTGC
TGGTCCATGGCAGTGGTACAGAGAACCCATCGACACAAACATCAAAATAG
CATTTTGTTATTTGTAAATTCATGAAACTGTCGCACAACATTCAA
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