CX289324

Overview
NameCX289324
Unique NameCX289324
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length546
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289324 vs. ExPASy Swiss-Prot
Match: ARI7_ARATH (Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana GN=ARI7 PE=2 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 6.143e-81
Identity = 145/179 (81.01%), Postives = 161/179 (89.94%), Query Frame = 1
Query:   13 ENSLEKYTHYYERWASNQSSRQKALADLHQMQTVHLEKLSDIQCTPESQLKFIIDAWLQIVECRRVLKWTYAYGYYLPEHEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNDESQSKEFNDFRTKLAGLTSVTKNYFENLVRALENGLADVDSHAAC-SKTTNSKYXXXXXASKG 546
            +NSLE+YTHYYERWASNQ+SRQKA+ADL Q Q  +LEKLSD QCTPESQLKFI++AWLQI+ECRRVLKWTYAYGYYLPEHEHAKRQFFEYLQGEAESGLERLHQC EK+L+QFL  E  SK+FNDFRTKLAGLTSVTKNYFENLV+ALENGLADVDSHAAC SK+T+SK       ++G
Sbjct:  365 KNSLERYTHYYERWASNQTSRQKAMADLQQAQMQNLEKLSDKQCTPESQLKFILEAWLQIIECRRVLKWTYAYGYYLPEHEHAKRQFFEYLQGEAESGLERLHQCVEKDLVQFLIAEGPSKDFNDFRTKLAGLTSVTKNYFENLVKALENGLADVDSHAACSSKSTSSKSTGCSSKTRG 543          
BLAST of CX289324 vs. ExPASy Swiss-Prot
Match: ARI8_ARATH (Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana GN=ARI8 PE=2 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 3.857e-75
Identity = 133/168 (79.17%), Postives = 153/168 (91.07%), Query Frame = 1
Query:   13 ENSLEKYTHYYERWASNQSSRQKALADLHQMQTVHLEKLSDIQCTPESQLKFIIDAWLQIVECRRVLKWTYAYGYYLPEHEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNDESQSKEFNDFRTKLAGLTSVTKNYFENLVRALENGLADVDSHAACSKTTNSK 516
            +NSLE+YTHYYERWA+NQSSRQKAL DL +MQT  +EKLSDIQC PESQLKFII+AWLQIVECRRVLKWTYAYG+Y+P+ EH KR FFEYLQGEAESGLERLHQCAEKELL +L+ +  S++FN+FRTKLAGLTSVTKNYFENLVRALENGL+DV+SH A  +T++SK
Sbjct:  356 KNSLERYTHYYERWATNQSSRQKALLDLKKMQTDDIEKLSDIQCQPESQLKFIIEAWLQIVECRRVLKWTYAYGFYIPDQEHGKRVFFEYLQGEAESGLERLHQCAEKELLPYLDAKGPSEDFNEFRTKLAGLTSVTKNYFENLVRALENGLSDVNSHDAYDRTSSSK 523          
BLAST of CX289324 vs. ExPASy Swiss-Prot
Match: ARI5_ARATH (Probable E3 ubiquitin-protein ligase ARI5 OS=Arabidopsis thaliana GN=ARI5 PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 2.677e-68
Identity = 126/168 (75.00%), Postives = 142/168 (84.52%), Query Frame = 1
Query:   13 ENSLEKYTHYYERWASNQSSRQKALADLHQMQTVHLEKLSDIQCTPESQLKFIIDAWLQIVECRRVLKWTYAYGYYLPEHEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNDESQSKEFNDFRTKLAGLTSVTKNYFENLVRALENGLADVDSHAACSKTTNSK 516
            +NSLE+YTHYYERWASNQ SRQKA+ DL +MQ+  L KLSDIQCTPESQLKFI +AWLQI+ECRRVLKWTYAYGYYL   +HAK+ FFEYLQGEAESGLERLH+C EK++  F   E  S+EFN FRTKL GLTS+TK +FENLV+ALENGLADVDS AA SK  NSK
Sbjct:  360 KNSLERYTHYYERWASNQVSRQKAMGDLQKMQSEKLGKLSDIQCTPESQLKFIAEAWLQIIECRRVLKWTYAYGYYL--QDHAKKPFFEYLQGEAESGLERLHKCVEKDIEVFELAEGPSEEFNHFRTKLTGLTSITKTFFENLVKALENGLADVDSQAASSKPANSK 525          
BLAST of CX289324 vs. ExPASy Swiss-Prot
Match: ARI6_ARATH (Putative E3 ubiquitin-protein ligase ARI6 OS=Arabidopsis thaliana GN=ARI6 PE=5 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 2.960e-67
Identity = 122/168 (72.62%), Postives = 141/168 (83.93%), Query Frame = 1
Query:   13 ENSLEKYTHYYERWASNQSSRQKALADLHQMQTVHLEKLSDIQCTPESQLKFIIDAWLQIVECRRVLKWTYAYGYYLPEHEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNDESQSKEFNDFRTKLAGLTSVTKNYFENLVRALENGLADVDSHAACSKTTNSK 516
            +NSLEKYTHYY+RWASNQ SRQKA+ DL +MQ+  L KLSDIQCT ESQLKFI +AWLQI+ECRRVLKWTYAYGYY+P+ +H K+QFFEYLQGEAESGLERLH+C E ++  F   E  S+EFN FRTKL  LTS+TK +F+NLV+ALENGLADVDSHAA SK  N K
Sbjct:  362 KNSLEKYTHYYKRWASNQVSRQKAMGDLQKMQSEKLRKLSDIQCTSESQLKFIAEAWLQIIECRRVLKWTYAYGYYVPD-DHTKKQFFEYLQGEAESGLERLHECIENDIEVFEFGEGPSEEFNHFRTKLTDLTSITKTFFQNLVKALENGLADVDSHAASSKPANCK 528          
BLAST of CX289324 vs. ExPASy Swiss-Prot
Match: ARI9_ARATH (Probable E3 ubiquitin-protein ligase ARI9 OS=Arabidopsis thaliana GN=ARI9 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.055e-56
Identity = 110/174 (63.22%), Postives = 133/174 (76.44%), Query Frame = 1
Query:   13 ENSLEKYTHYYERWASNQSSRQKALADLHQMQTVHLEKLSDIQCTPESQLKFIIDAWLQIVECRRVLKWTYAYGYYLPEHEHAKRQFFEYLQGEAESGLERLHQCAEKELLQ-FLNDESQSKEFNDFRTKLAGLTSVTKNYFENLVRALENGLADVDSHAAC----SKTTNSKY 519
            ++ +++YTHYY RWA NQSSR KA+ DL ++Q+V L++LSD QCT E+QL+F +DAWLQI+ECRRVLKWTYAYGYYL   +  KR+FFEYLQGEAESGLERLH CAE EL Q F+  E  S  FN FR KL GLT+VTK YFENLV+ALENGL DV  +       +K+T  KY
Sbjct:  344 QSEIKRYTHYYVRWAENQSSRLKAMRDLEKLQSVQLKELSDNQCTSETQLQFTVDAWLQIIECRRVLKWTYAYGYYL--QDLPKRKFFEYLQGEAESGLERLHHCAENELKQFFIKSEDPSDTFNAFRMKLTGLTTVTKTYFENLVKALENGLVDVTHNEFPPDNETKSTQEKY 515          
BLAST of CX289324 vs. ExPASy Swiss-Prot
Match: ARI10_ARATH (Probable E3 ubiquitin-protein ligase ARI10 OS=Arabidopsis thaliana GN=ARI10 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.200e-54
Identity = 103/156 (66.03%), Postives = 122/156 (78.21%), Query Frame = 1
Query:   13 ENSLEKYTHYYERWASNQSSRQKALADLHQMQTVHLEKLSDIQCTPESQLKFIIDAWLQIVECRRVLKWTYAYGYYLPEHEHAKRQFFEYLQGEAESGLERLHQCAEKELLQ-FLNDESQSKEFNDFRTKLAGLTSVTKNYFENLVRALENGLADV 477
            ++ +++YTHYY RW  NQSSR KA++DL + Q+V L++LSD QC P+  L+FI+DAWLQI+ECRRVLKWTYAYGYYL     AKR  FEYLQGEAE+GLERLH CAE EL Q F+  E  S  FN FR KL GLT VTK YF+NLV+ALENGLADV
Sbjct:  334 QSEIKRYTHYYVRWVENQSSRLKAMSDLEKFQSVQLKQLSDNQCKPKIDLQFIVDAWLQIIECRRVLKWTYAYGYYL--DNLAKRPLFEYLQGEAETGLERLHHCAENELKQFFIKSEDPSDTFNAFRMKLTGLTKVTKTYFDNLVKALENGLADV 487          
BLAST of CX289324 vs. ExPASy Swiss-Prot
Match: ARI11_ARATH (Probable E3 ubiquitin-protein ligase ARI11 OS=Arabidopsis thaliana GN=ARI11 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 1.927e-50
Identity = 97/164 (59.15%), Postives = 120/164 (73.17%), Query Frame = 1
Query:    4 RHEENSLEKYTHYYERWASNQSSRQKALADLHQMQTVHLEKLSDIQCTPESQLKFIIDAWLQIVECRRVLKWTYAYGYYLPEHEHAKRQF-----FEYLQGEAESGLERLHQCAEKELLQFLND-ESQSKEFNDFRTKLAGLTSVTKNYFENLVRALENGLADV 477
            +  ++++++YTH+YERWA NQSSR KA++DL + Q+V L++LSDIQ TPE+QL F +DAWLQI+ECRRVLKWTYAYGYY+   E  KR F           EAE+GLERLH CAE+EL QF+   E  SK F + R KL  LT  TK YFENLV+ALENGL DV
Sbjct:  352 KRAKDAIDRYTHFYERWAFNQSSRLKAMSDLEKWQSVELKQLSDIQSTPETQLSFTVDAWLQIIECRRVLKWTYAYGYYILSQERNKRVFARTFSLSCCSAEAENGLERLHHCAEEELKQFIGKIEDPSKNFGELRAKLIDLTKATKTYFENLVKALENGLVDV 515          
BLAST of CX289324 vs. ExPASy Swiss-Prot
Match: ARI12_ARATH (Probable E3 ubiquitin-protein ligase ARI12 OS=Arabidopsis thaliana GN=ARI12 PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 2.141e-33
Identity = 74/162 (45.68%), Postives = 102/162 (62.96%), Query Frame = 1
Query:   13 ENSLEKYTHYYERWASNQSSRQKALADLHQMQTVHLEKLSDIQCTPESQLKFIIDAWLQIVECRRVLKWTYAYGYYLPEHEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNDESQSKEFNDFRTKLAGLTSVTKNYFENLVRALENGLADVDSHAACS 498
            E+   +Y   YE W SN+   QK  A+L ++ T+ +++LS+ Q    SQLKFI++A LQI+ECRRVL+WTY YGYYL E E  K+   +  Q   +  +E L  C E  L  F  +E  SK+FN FR KL  LTS+T+N++EN+V+ +ENGLA V S    S
Sbjct:  330 ESDSNRYEDCYENWDSNELLMQKEQANLPKLDTI-IQELSNTQLENVSQLKFILEAGLQIIECRRVLEWTYVYGYYLREDEVGKQNLLKDTQERLKKFVENLKHCLETNLQPFRYEEEPSKDFNAFRIKLTELTSLTRNHYENVVKDVENGLASVVSEGEAS 490          
BLAST of CX289324 vs. ExPASy Swiss-Prot
Match: ARI14_ARATH (Probable E3 ubiquitin-protein ligase ARI14 OS=Arabidopsis thaliana GN=ARI14 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.595e-12
Identity = 45/144 (31.25%), Postives = 76/144 (52.78%), Query Frame = 1
Query:   46 ERWASNQSSRQKALADLHQMQTVHLEKLSDIQCTPESQLKFIIDAWLQIVECRRVLKWTYAYGYYLPEHEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNDESQSKEFNDFRTKLAGLTSVTKNYFENLVRALENGLADV 477
            +RW   Q   ++A +DL   +  +++K SD+    E  +  I +  + IV+CRRVLKW   Y Y+  E+E++K ++  YLQG A + L+      + E    +   +  +E   FR  +   TS   NYF + ++ L++GL DV
Sbjct:  315 DRWNVCQKLLEQAKSDLEAFEETNIKKPSDL--LREQDIMIIREGLMLIVQCRRVLKWCCVYDYFHTEYENSK-EYLRYLQGNAIATLQSYSNTLQ-EQKDIVLAAATYEECTFFRHTIPTATSNIGNYFYDFMKTLQDGLVDV 454          
BLAST of CX289324 vs. ExPASy Swiss-Prot
Match: ARI13_ARATH (Probable E3 ubiquitin-protein ligase ARI13 OS=Arabidopsis thaliana GN=ARI13 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.350e-11
Identity = 42/145 (28.97%), Postives = 76/145 (52.41%), Query Frame = 1
Query:   52 WASNQSSRQKALADLHQMQTVHLEKLSDIQCTPESQLKFIIDAWLQIVECRRVLKWTYAYGYYLPEHEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNDESQSKEFNDF---RTKLAGLTSVTKNYFENLVRALENGLADV 477
            W +++ S ++A +DL   +  +++  SD+    E     I    + IV+CR+VLKW+  Y Y   E+E +KR++  +LQ +A S +E   +   +E+       + S  + +F   + K+   TS   NYF + ++ L+ GL DV
Sbjct:  352 WKASEVSLKQAKSDLQAFEESNIKNPSDLT---EKDFTIIRKGLMLIVQCRQVLKWSCVYDYLHAEYEMSKREYLRFLQADATSLVESFSKTLNEEI-----GRASSATYENFCCVKHKVTIETSNIGNYFYHFIKTLQEGLDDV 488          
The following BLAST results are available for this feature:
BLAST of CX289324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
ARI7_ARATH6.143e-8181.01Probable E3 ubiquitin-protein ligase ARI7 OS=Arabi... [more]
ARI8_ARATH3.857e-7579.17Probable E3 ubiquitin-protein ligase ARI8 OS=Arabi... [more]
ARI5_ARATH2.677e-6875.00Probable E3 ubiquitin-protein ligase ARI5 OS=Arabi... [more]
ARI6_ARATH2.960e-6772.62Putative E3 ubiquitin-protein ligase ARI6 OS=Arabi... [more]
ARI9_ARATH1.055e-5663.22Probable E3 ubiquitin-protein ligase ARI9 OS=Arabi... [more]
ARI10_ARATH2.200e-5466.03Probable E3 ubiquitin-protein ligase ARI10 OS=Arab... [more]
ARI11_ARATH1.927e-5059.15Probable E3 ubiquitin-protein ligase ARI11 OS=Arab... [more]
ARI12_ARATH2.141e-3345.68Probable E3 ubiquitin-protein ligase ARI12 OS=Arab... [more]
ARI14_ARATH1.595e-1231.25Probable E3 ubiquitin-protein ligase ARI14 OS=Arab... [more]
ARI13_ARATH1.350e-1128.97Probable E3 ubiquitin-protein ligase ARI13 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionC02011F12SK IF1 Citrus clementina cDNA clone C02011F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289324 ID=CX289324; Name=CX289324; organism=Citrus clementina; type=EST; length=546bp
ATTCGGCACGAGGAAAATTCTCTGGAGAAATACACTCATTATTATGAACG
TTGGGCGAGCAATCAATCGTCAAGGCAAAAAGCTCTGGCAGATTTACACC
AAATGCAGACTGTGCATCTTGAGAAGCTTAGTGACATCCAGTGCACGCCT
GAGTCTCAGCTCAAGTTCATTATAGATGCGTGGCTTCAGATAGTTGAATG
TCGGAGAGTTCTGAAATGGACCTATGCTTATGGATATTACCTACCTGAGC
ACGAGCATGCCAAGAGACAGTTTTTTGAGTACCTGCAAGGTGAAGCAGAG
TCGGGTTTGGAAAGGCTTCATCAATGTGCGGAGAAGGAACTACTACAATT
CTTAAACGATGAGAGCCAATCAAAAGAGTTCAATGATTTCCGTACGAAGT
TAGCTGGATTGACGAGTGTTACCAAAAATTACTTCGAGAACCTTGTTAGA
GCTCTAGAGAATGGATTAGCAGATGTAGACTCCCATGCAGCTTGTAGCAA
GACGACAAACTCTAAGTATGGCGGAGGGGGTGGGGCTAGCAAGGGA
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