CX289325

Overview
NameCX289325
Unique NameCX289325
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length435
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289325 vs. ExPASy Swiss-Prot
Match: COPA2_ARATH (Coatomer subunit alpha-2 OS=Arabidopsis thaliana GN=At2g21390 PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 7.346e-68
Identity = 118/144 (81.94%), Postives = 134/144 (93.06%), Query Frame = 2
Query:    2 EYVLGLQLELKRRELKDDPVRQQELAAYFTHCNLQMPHLRLALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQAAERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCD 433
            EYVLGLQLELKRRE+KDDPVRQQELAAYFTHC LQ PHLRLA  +AM+VC+K+KN+ATA +FAR LL+TNPTIESQ++TARQV+QAAERN TDAT LNYDFRNPFVICG+T+VPIY+GQKDV+CPYCT RFVPSQEG +CSVCD
Sbjct: 1056 EYVLGLQLELKRREMKDDPVRQQELAAYFTHCKLQTPHLRLAYFSAMTVCYKSKNMATAAHFARSLLDTNPTIESQARTARQVMQAAERNMTDATTLNYDFRNPFVICGSTYVPIYKGQKDVACPYCTARFVPSQEGNICSVCD 1199          
BLAST of CX289325 vs. ExPASy Swiss-Prot
Match: COPA1_ARATH (Coatomer subunit alpha-1 OS=Arabidopsis thaliana GN=At1g62020 PE=1 SV=2)

HSP 1 Score: 251.906 bits (642), Expect = 8.121e-67
Identity = 118/144 (81.94%), Postives = 134/144 (93.06%), Query Frame = 2
Query:    2 EYVLGLQLELKRRELKDDPVRQQELAAYFTHCNLQMPHLRLALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQAAERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCD 433
            EYVLGLQ+ELKRRE+KDDPVRQQELAAYFTHCNLQ PHLRLALL+AM VC+K KNLATA NFARRLLET+P ++SQ+K ARQV+QAAERN TD T+LNYDFRNPFV+CG+T+VPIYRGQKDVSCPYCT RFVP+QEG +C+VCD
Sbjct: 1055 EYVLGLQMELKRREMKDDPVRQQELAAYFTHCNLQTPHLRLALLSAMGVCYKAKNLATASNFARRLLETSP-VDSQAKMARQVVQAAERNMTDETKLNYDFRNPFVVCGSTYVPIYRGQKDVSCPYCTARFVPNQEGNICTVCD 1197          
BLAST of CX289325 vs. ExPASy Swiss-Prot
Match: COPA3_ORYSJ (Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica GN=Os09g0127800 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 3.663e-51
Identity = 97/144 (67.36%), Postives = 117/144 (81.25%), Query Frame = 2
Query:    2 EYVLGLQLELKRRELKDDPVRQQELAAYFTHCNLQMPHLRLALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQAAERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCD 433
            EYVLGL++ELKR+EL+DD  RQQELAAYFT+C LQ  H+RL L +AM +C+K KN ATA +FAR LLE NP  ESQ+K ARQV Q       D+ +LNYD+RNPFV+CGAT+VPIYRGQKDVSCPYC +RFVPS EGQLC++C+
Sbjct: 1058 EYVLGLRMELKRKELRDDVNRQQELAAYFTNCKLQRVHMRLVLGSAMGLCYKQKNFATAEHFARMLLENNPN-ESQAKRARQVQQQCS-GKKDSCELNYDYRNPFVVCGATYVPIYRGQKDVSCPYCGSRFVPSIEGQLCTICE 1199          
BLAST of CX289325 vs. ExPASy Swiss-Prot
Match: COPA2_ORYSJ (Coatomer subunit alpha-2 OS=Oryza sativa subsp. japonica GN=Os03g0711500 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 1.066e-50
Identity = 95/144 (65.97%), Postives = 118/144 (81.94%), Query Frame = 2
Query:    2 EYVLGLQLELKRRELKDDPVRQQELAAYFTHCNLQMPHLRLALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQAAERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCD 433
            EYVLGL++ELKR+EL+DD  RQQELAAYFT+C LQ  H+RL L +AM +C+K KN ATA +FAR LLE NP  E+Q++ ARQV Q       D+++LNYD+RNPFV+CGAT+VPIYRGQKDVSCPYC +RFVPS EGQLC++C+
Sbjct: 1058 EYVLGLRMELKRKELRDDVNRQQELAAYFTNCKLQRVHMRLVLGSAMGLCYKQKNFATAEHFARMLLENNPN-EAQARRARQVQQQCS-GKKDSSELNYDYRNPFVVCGATYVPIYRGQKDVSCPYCGSRFVPSIEGQLCTICE 1199          
BLAST of CX289325 vs. ExPASy Swiss-Prot
Match: COPA1_ORYSJ (Coatomer subunit alpha-1 OS=Oryza sativa subsp. japonica GN=Os03g0711400 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 1.066e-50
Identity = 95/144 (65.97%), Postives = 118/144 (81.94%), Query Frame = 2
Query:    2 EYVLGLQLELKRRELKDDPVRQQELAAYFTHCNLQMPHLRLALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQAAERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCD 433
            EYVLGL++ELKR+EL+DD  RQQELAAYFT+C LQ  H+RL L +AM +C+K KN ATA +FAR LLE NP  E+Q++ ARQV Q       D+++LNYD+RNPFV+CGAT+VPIYRGQKDVSCPYC +RFVPS EGQLC++C+
Sbjct: 1058 EYVLGLRMELKRKELRDDVNRQQELAAYFTNCKLQRVHMRLVLGSAMGLCYKQKNFATAEHFARMLLENNPN-EAQARRARQVQQQCS-GKKDSSELNYDYRNPFVVCGATYVPIYRGQKDVSCPYCGSRFVPSIEGQLCTICE 1199          
BLAST of CX289325 vs. ExPASy Swiss-Prot
Match: COPA_DICDI (Coatomer subunit alpha OS=Dictyostelium discoideum GN=copa PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.385e-34
Identity = 73/151 (48.34%), Postives = 106/151 (70.20%), Query Frame = 2
Query:    2 EYVLGLQLELKRREL-----KDDPV-RQQELAAYFTHCNLQMPHLRLALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQAAERNPT--DATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVC 430
            EY+LG+++EL+R+EL     KD  + RQ ELAAYFTHCNL   HL L+L +AM+  +K K+   A +FARRL+  NP  +  ++ A++V   A++ PT  D  QLNYD RNPFVIC  ++VPIY+G   + CPYC++ ++P+ +G++CSVC
Sbjct: 1053 EYILGIKIELQRKELSIGAQKDSTLGRQAELAAYFTHCNLDPSHLILSLRSAMNCAYKVKHFNLAASFARRLISLNPNPDLATQ-AKKVFNFAQQTPTPSDIQQLNYDERNPFVICAHSYVPIYKGSPLIKCPYCSSCYLPTHKGKVCSVC 1202          
BLAST of CX289325 vs. ExPASy Swiss-Prot
Match: COPA_MOUSE (Coatomer subunit alpha OS=Mus musculus GN=Copa PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.973e-32
Identity = 71/146 (48.63%), Postives = 95/146 (65.07%), Query Frame = 2
Query:    2 EYVLGLQLELKRRELKDDPVRQQ----ELAAYFTHCNLQMPHLRLALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQAAERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSV 427
            EY++GL +E++R++L  + + QQ    E+AAYFTH NLQ  H+ L L  A+++ FK KN  TA  FARRLLE  P  E   +T R++L A E+NPTDA QLNYD  NPF IC A++ PIYRG+    CP     + P  +GQ+C V
Sbjct: 1059 EYIVGLCMEIERKKLPKETLDQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKTAATFARRLLELGPKPEVAQQT-RKILSACEKNPTDACQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYSPEFKGQICRV 1203          
BLAST of CX289325 vs. ExPASy Swiss-Prot
Match: COPA_HUMAN (Coatomer subunit alpha OS=Homo sapiens GN=COPA PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 4.973e-32
Identity = 71/146 (48.63%), Postives = 94/146 (64.38%), Query Frame = 2
Query:    2 EYVLGLQLELKRRELKDDPVRQQ----ELAAYFTHCNLQMPHLRLALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQAAERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSV 427
            EY++GL +E +R++L  + + QQ    E+AAYFTH NLQ  H+ L L  A+++ FK KN  TA  FARRLLE  P  E   +T R++L A E+NPTDA QLNYD  NPF IC A++ PIYRG+    CP     + P  +GQ+C V
Sbjct: 1059 EYIVGLSVETERKKLPKETLEQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKTAATFARRLLELGPKPEVAQQT-RKILSACEKNPTDAYQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYSPEFKGQICRV 1203          
BLAST of CX289325 vs. ExPASy Swiss-Prot
Match: COPA_BOVIN (Coatomer subunit alpha OS=Bos taurus GN=COPA PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.973e-32
Identity = 71/146 (48.63%), Postives = 94/146 (64.38%), Query Frame = 2
Query:    2 EYVLGLQLELKRRELKDDPVRQQ----ELAAYFTHCNLQMPHLRLALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQAAERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSV 427
            EY++GL +E +R++L  + + QQ    E+AAYFTH NLQ  H+ L L  A+++ FK KN  TA  FARRLLE  P  E   +T R++L A E+NPTDA QLNYD  NPF IC A++ PIYRG+    CP     + P  +GQ+C V
Sbjct: 1059 EYIVGLSMETERKKLPKETLEQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPEVAQQT-RKILSACEKNPTDAYQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYSPEFKGQICKV 1203          
BLAST of CX289325 vs. ExPASy Swiss-Prot
Match: COPA_YEAST (Coatomer subunit alpha OS=Saccharomyces cerevisiae GN=RET1 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.243e-16
Identity = 53/140 (37.86%), Postives = 80/140 (57.14%), Query Frame = 2
Query:    2 EYVLGLQLELKRRELKD-DPVRQQELAAYFTHCNLQMPHLRLALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQAAERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQL 418
            EY+LGL +EL+RR LK+ + VR  ELAAYFT   L   H   AL  AMS  FK+KN   A  FA   L+   +   +++ AR++   A+   +DA  +++D    F IC AT+ PIY     VS P   +++V +++ ++
Sbjct: 1043 EYILGLSIELERRSLKEGNTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS-GPRAEQARKIKNKADSMASDAIPIDFDPYAKFDICAATYKPIYEDTPSVSDPLTGSKYVITEKDKI 1181          
The following BLAST results are available for this feature:
BLAST of CX289325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
COPA2_ARATH7.346e-6881.94Coatomer subunit alpha-2 OS=Arabidopsis thaliana G... [more]
COPA1_ARATH8.121e-6781.94Coatomer subunit alpha-1 OS=Arabidopsis thaliana G... [more]
COPA3_ORYSJ3.663e-5167.36Coatomer subunit alpha-3 OS=Oryza sativa subsp. ja... [more]
COPA2_ORYSJ1.066e-5065.97Coatomer subunit alpha-2 OS=Oryza sativa subsp. ja... [more]
COPA1_ORYSJ1.066e-5065.97Coatomer subunit alpha-1 OS=Oryza sativa subsp. ja... [more]
COPA_DICDI2.385e-3448.34Coatomer subunit alpha OS=Dictyostelium discoideum... [more]
COPA_MOUSE4.973e-3248.63Coatomer subunit alpha OS=Mus musculus GN=Copa PE=... [more]
COPA_HUMAN4.973e-3248.63Coatomer subunit alpha OS=Homo sapiens GN=COPA PE=... [more]
COPA_BOVIN4.973e-3248.63Coatomer subunit alpha OS=Bos taurus GN=COPA PE=1 ... [more]
COPA_YEAST2.243e-1637.86Coatomer subunit alpha OS=Saccharomyces cerevisiae... [more]

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Properties
Property NameValue
Genbank descriptionC02011G02SK IF1 Citrus clementina cDNA clone C02011G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289325 ID=CX289325; Name=CX289325; organism=Citrus clementina; type=EST; length=435bp
GGAATATGTCCTTGGTCTGCAGTTGGAGCTTAAAAGAAGGGAACTCAAAG
ATGATCCGGTACGCCAGCAGGAGCTTGCTGCCTACTTCACCCACTGCAAC
CTTCAAATGCCTCACTTACGGTTAGCCTTGCTAAATGCAATGTCAGTATG
CTTCAAGAATAAGAACCTTGCTACAGCGGGTAACTTTGCCAGGCGGTTAT
TGGAGACAAACCCCACGATTGAGAGCCAATCAAAAACGGCCAGGCAAGTG
CTTCAGGCTGCAGAGAGGAATCCAACAGATGCCACACAGCTGAATTATGA
TTTTAGAAACCCATTTGTCATTTGTGGAGCAACACATGTGCCAATCTACC
GAGGACAGAAGGATGTCTCATGCCCCTACTGCACTACCCGGTTTGTGCCT
AGCCAAGAAGGGCAGCTCTGCTCAGTGTGTGATCT
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