CX289330

Overview
NameCX289330
Unique NameCX289330
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length296
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX289330 vs. ExPASy Swiss-Prot
Match: CNGC4_ARATH (Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 2.193e-26
Identity = 55/72 (76.39%), Postives = 58/72 (80.56%), Query Frame = 2 
Query:    2 RSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIXXXXXXXXXXXXGEDRLRLYTALLTSPKPNQDDFD 217
            RSARYYSPGWRTWAAVA+QLAWRRYKHRLTLTSLSFI            GED+LRLY A+LTSPKPN DDFD
Sbjct:  621 RSARYYSPGWRTWAAVAVQLAWRRYKHRLTLTSLSFIRPRRPLSRCASLGEDKLRLYAAILTSPKPNPDDFD 692
The following BLAST results are available for this feature:
BLAST of CX289330 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CNGC4_ARATH2.193e-2676.39Cyclic nucleotide-gated ion channel 4 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionC02011G07SK IF1 Citrus clementina cDNA clone C02011G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289330 ID=CX289330; Name=CX289330; organism=Citrus clementina; type=EST; length=296bp
GAGAAGTGCCAGGTACTATTCTCCAGGATGGAGAACTTGGGCAGCTGTGG
CTATTCAGCTTGCTTGGAGAAGGTACAAGCACCGGTTGACACTCACTTCG
CTGTCGTTTATACGTCCGAGAAGGCCTTTGTCCCGGTGTTCGTCGTTGGG
GGAGGACAGGCTCAGGCTTTATACGGCTTTGTTAACTTCTCCGAAACCTA
ACCAAGATGATTTTGATTTCTGAAATTTGTTGGAGGACGTATGGAAGAAC
TTTGTACTGGAACATATTTTATTCGGAGGAAGAGTTACCAAGATTC
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