CX289331

Overview
NameCX289331
Unique NameCX289331
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SR54C_ARATH (Signal recognition particle 54 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=FFC PE=1 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 4.538e-93
Identity = 171/190 (90.00%), Postives = 184/190 (96.84%), Query Frame = 2
Query:    2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIE 571
            DTAGRLQIDK MMDELKDVK+ LNPTEVLLVVDAMTGQEAAALVTTFN+EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKA EVM+QEDAE++QKKIMSA FDFNDFLKQTR VA+MGSM+RV+GMIPGMGK++PAQ+REAEK+L +MEAMIE
Sbjct:  265 DTAGRLQIDKGMMDELKDVKKFLNPTEVLLVVDAMTGQEAAALVTTFNVEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKATEVMRQEDAEDLQKKIMSAKFDFNDFLKQTRAVAKMGSMTRVLGMIPGMGKVSPAQIREAEKNLLVMEAMIE 454          
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_SYNY3 (Signal recognition particle protein OS=Synechocystis sp. (strain PCC 6803) GN=ffh PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.205e-61
Identity = 117/191 (61.26%), Postives = 149/191 (78.01%), Query Frame = 2
Query:    2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEA 574
            DTAGRLQID  MM EL ++K+V+ P + LLVVDAMTGQEAA L  TF+ +IGITGAILTKLDGD+RGGAALSV+++SG+PIK VG GE++E L+PFYPDR+A RIL MGDVL+ VEKAQE +   D E++Q KI+ A FDF+DF+KQ R +  MGS+  ++ MIPGM K++   + + EK LK  EAMI +
Sbjct:  189 DTAGRLQIDPQMMAELAEIKQVVKPDDTLLVVDAMTGQEAANLTHTFHEQIGITGAILTKLDGDTRGGAALSVRQISGQPIKFVGVGEKVEALQPFYPDRLASRILNMGDVLTLVEKAQEAIDVGDVEKLQNKILEATFDFDDFIKQMRFMKNMGSLGGLLKMIPGMNKLSSGDIEKGEKELKRTEAMISS 379          
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_SYNE7 (Signal sequence-binding protein OS=Synechococcus elongatus (strain PCC 7942) GN=ffh PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 2.685e-61
Identity = 121/192 (63.02%), Postives = 151/192 (78.65%), Query Frame = 2
Query:    2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGM-GKITPAQVREAEKSLKIMEAMIEA 574
            DTAGRLQID  MM+EL  VK  + P EVLLVVD+M GQEAA+L  +F+  IGITGAILTKLDGDSRGGAALS++ VSG+PIK VG GE++E L+PF+P+RMA RILGMGDVL+ VEKAQE +   D E+MQ+KI++A FDF DFLKQ R +  MGS++  I +IPG+ GKI   Q+R+ E+ LK +EAMI +
Sbjct:  189 DTAGRLQIDTEMMEELAQVKEAIAPHEVLLVVDSMIGQEAASLTRSFHERIGITGAILTKLDGDSRGGAALSIRRVSGQPIKFVGLGEKVEALQPFHPERMASRILGMGDVLTLVEKAQEEIDLADVEKMQEKILAAKFDFTDFLKQMRLLKNMGSLAGFIKLIPGLGGKINDEQLRQGERQLKRVEAMINS 380          
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_STRMU (Signal recognition particle protein OS=Streptococcus mutans GN=ffh PE=3 SV=3)

HSP 1 Score: 198.749 bits (504), Expect = 1.633e-50
Identity = 92/167 (55.09%), Postives = 129/167 (77.25%), Query Frame = 2
Query:    2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGM 502
            DTAGRLQID+ +M EL+D+K + NP E+LLVVD+M GQEAA +   FN ++ +TG ILTK+DGD+RGGAALSV++++GKPIK  G GE++ D+E F+PDRM+ RILGMGD+L+ +EKA +   ++ + E+ +K+   +FDFNDF++Q   V  MGSM  ++ MIPGM
Sbjct:  191 DTAGRLQIDEKLMTELRDIKALANPNEILLVVDSMIGQEAANVAREFNQQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSSRILGMGDLLTLIEKASQDYDEQKSAELAEKMRENSFDFNDFIEQLDQVQNMGSMEDILKMIPGM 357          
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_BACSU (Signal recognition particle protein OS=Bacillus subtilis GN=ffh PE=1 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.133e-50
Identity = 95/192 (49.48%), Postives = 142/192 (73.96%), Query Frame = 2
Query:    2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMIEA 574
            DTAGRL ID  +MDEL +VK + NP E+ LVVD+MTGQ+A  +  +FN ++G+TG +LTKLDGD+RGGAALS++ V+  PIK  G GE+++ LEPF+P+RMA RILGMGDVL+ +EKAQ  + ++ A+E+++K+ + +F  +DFL+Q   V  MG +  ++ M+PG GK+   + ++  EK L  +EA+I++
Sbjct:  191 DTAGRLHIDHELMDELTNVKEIANPEEIFLVVDSMTGQDAVNVAKSFNEQLGLTGVVLTKLDGDTRGGAALSIRAVTNTPIKFAGLGEKLDALEPFHPERMASRILGMGDVLTLIEKAQASVDEDKAKELEQKMRTMSFTLDDFLEQLGQVRNMGPLDELLQMMPGAGKMKGLKNIQVDEKQLNHVEAIIKS 382          
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_ECOLI (Signal recognition particle protein OS=Escherichia coli (strain K12) GN=ffh PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 3.638e-50
Identity = 101/194 (52.06%), Postives = 138/194 (71.13%), Query Frame = 2
Query:    2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSAN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEA 574
            DTAGRL +D+AMMDE+K V   +NP E L VVDAMTGQ+AA     FN  + +TG +LTK+DGD+RGGAALS++ ++GKPIK +G GE+ E LEPF+PDR+A RILGMGDVLS +E  +  + +  AE++  K+   + FD NDFL+Q R +  MG M+ ++G +PGMG+I P  V+    +K L  MEA+I +
Sbjct:  190 DTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAIINS 382          
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_ECOL6 (Signal recognition particle protein OS=Escherichia coli O6 GN=ffh PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 3.638e-50
Identity = 101/194 (52.06%), Postives = 138/194 (71.13%), Query Frame = 2
Query:    2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSAN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEA 574
            DTAGRL +D+AMMDE+K V   +NP E L VVDAMTGQ+AA     FN  + +TG +LTK+DGD+RGGAALS++ ++GKPIK +G GE+ E LEPF+PDR+A RILGMGDVLS +E  +  + +  AE++  K+   + FD NDFL+Q R +  MG M+ ++G +PGMG+I P  V+    +K L  MEA+I +
Sbjct:  190 DTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAIINS 382          
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_ECO57 (Signal recognition particle protein OS=Escherichia coli O157:H7 GN=ffh PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 3.638e-50
Identity = 101/194 (52.06%), Postives = 138/194 (71.13%), Query Frame = 2
Query:    2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSAN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEA 574
            DTAGRL +D+AMMDE+K V   +NP E L VVDAMTGQ+AA     FN  + +TG +LTK+DGD+RGGAALS++ ++GKPIK +G GE+ E LEPF+PDR+A RILGMGDVLS +E  +  + +  AE++  K+   + FD NDFL+Q R +  MG M+ ++G +PGMG+I P  V+    +K L  MEA+I +
Sbjct:  190 DTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAIINS 382          
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_AQUAE (Signal recognition particle protein OS=Aquifex aeolicus GN=ffh PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.382e-49
Identity = 94/191 (49.21%), Postives = 135/191 (70.68%), Query Frame = 2
Query:    2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEA 574
            DTAGRL +D+ +M EL+++K V NP+E+L V DAM GQ A     TF+  +G+TG ++TK+DGD+RGG ALSVKEV G PIK +G GE++ED+EPFYPDR+A RILG+GD+ S VEKAQEV+ ++ A+ M  K+M+  FD  D  +  R + +MG + +++ MIPG+       ++  EK  K +EA+I +
Sbjct:  184 DTAGRLHVDEELMKELQEIKEVTNPSEILYVADAMQGQTALETAKTFHERLGLTGVVITKMDGDARGGLALSVKEVLGVPIKFIGVGEKIEDIEPFYPDRIAQRILGLGDIQSLVEKAQEVITEDKAQVMATKVMTGEFDLEDLREMLRMIQQMGPLDKLLSMIPGVAP-QLKHLKVDEKQFKKIEAIINS 373          
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_RICCN (Signal recognition particle protein OS=Rickettsia conorii GN=ffh PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.528e-48
Identity = 91/186 (48.92%), Postives = 136/186 (73.12%), Query Frame = 2
Query:    2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIME 559
            DTAGR QIDKAMM+E   +K+++ PTE LLV+D+MTGQ+A    ++FN ++ I+G IL+++DGDS+GGAALSVK ++ KPIK +  GE + DLE F  +R+A RIL MGD++SFVEKA  ++ +E+AE+   K+    FD ND+L+Q R++ +MG    ++ M+PG GKI   Q+ +++ + KI+E
Sbjct:  191 DTAGRTQIDKAMMEEALAIKKIVEPTETLLVIDSMTGQDAVVTASSFNEKLAISGLILSRIDGDSKGGAALSVKYITKKPIKFLSSGENLIDLEEFDAERLASRILDMGDIISFVEKAASIVDREEAEKTAAKLKKGKFDLNDYLQQMRSIKKMGGFGSILSMLPGSGKIMD-QIDQSKLNSKIIE 375          
The following BLAST results are available for this feature:
BLAST of CX289331 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
SR54C_ARATH4.538e-9390.00Signal recognition particle 54 kDa protein, chloro... [more]
SRP54_SYNY31.205e-6161.26Signal recognition particle protein OS=Synechocyst... [more]
SRP54_SYNE72.685e-6163.02Signal sequence-binding protein OS=Synechococcus e... [more]
SRP54_STRMU1.633e-5055.09Signal recognition particle protein OS=Streptococc... [more]
SRP54_BACSU2.133e-5049.48Signal recognition particle protein OS=Bacillus su... [more]
SRP54_ECOLI3.638e-5052.06Signal recognition particle protein OS=Escherichia... [more]
SRP54_ECOL63.638e-5052.06Signal recognition particle protein OS=Escherichia... [more]
SRP54_ECO573.638e-5052.06Signal recognition particle protein OS=Escherichia... [more]
SRP54_AQUAE1.382e-4949.21Signal recognition particle protein OS=Aquifex aeo... [more]
SRP54_RICCN1.528e-4848.92Signal recognition particle protein OS=Rickettsia ... [more]

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Properties
Property NameValue
Genbank descriptionC02011G08SK IF1 Citrus clementina cDNA clone C02011G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289331 ID=CX289331; Name=CX289331; organism=Citrus clementina; type=EST; length=576bp
AGATACTGCTGGAAGGCTTCAGATAGATAAAGCAATGATGGATGAGTTGA
AAGATGTGAAGCGTGTACTGAATCCTACTGAGGTTTTGCTAGTTGTGGAT
GCAATGACTGGCCAAGAAGCTGCAGCCCTGGTCACAACATTCAACATTGA
GATAGGGATTACAGGTGCCATTTTGACAAAGTTAGATGGAGATTCTAGGG
GTGGTGCGGCTTTGAGTGTTAAAGAGGTATCAGGAAAGCCAATCAAACTT
GTTGGACGAGGAGAACGAATGGAGGACCTTGAACCTTTCTACCCAGATCG
CATGGCTGGACGTATCTTAGGAATGGGAGATGTTCTCTCATTTGTAGAGA
AGGCACAAGAAGTTATGCAACAAGAAGATGCTGAAGAAATGCAAAAGAAG
ATAATGAGTGCGAATTTTGACTTCAATGATTTCTTAAAGCAAACCCGTAC
TGTTGCACGTATGGGTTCGATGAGTCGTGTTATAGGAATGATCCCTGGAA
TGGGGAAGATTACTCCTGCACAAGTTCGAGAAGCAGAGAAGAGTTTAAAA
ATAATGGAAGCAATGATCGAAGCAAT
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