CX289331
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SR54C_ARATH (Signal recognition particle 54 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=FFC PE=1 SV=1) HSP 1 Score: 340.117 bits (871), Expect = 4.538e-93 Identity = 171/190 (90.00%), Postives = 184/190 (96.84%), Query Frame = 2 Query: 2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIE 571 DTAGRLQIDK MMDELKDVK+ LNPTEVLLVVDAMTGQEAAALVTTFN+EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKA EVM+QEDAE++QKKIMSA FDFNDFLKQTR VA+MGSM+RV+GMIPGMGK++PAQ+REAEK+L +MEAMIE Sbjct: 265 DTAGRLQIDKGMMDELKDVKKFLNPTEVLLVVDAMTGQEAAALVTTFNVEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKATEVMRQEDAEDLQKKIMSAKFDFNDFLKQTRAVAKMGSMTRVLGMIPGMGKVSPAQIREAEKNLLVMEAMIE 454
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_SYNY3 (Signal recognition particle protein OS=Synechocystis sp. (strain PCC 6803) GN=ffh PE=3 SV=1) HSP 1 Score: 235.728 bits (600), Expect = 1.205e-61 Identity = 117/191 (61.26%), Postives = 149/191 (78.01%), Query Frame = 2 Query: 2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEA 574 DTAGRLQID MM EL ++K+V+ P + LLVVDAMTGQEAA L TF+ +IGITGAILTKLDGD+RGGAALSV+++SG+PIK VG GE++E L+PFYPDR+A RIL MGDVL+ VEKAQE + D E++Q KI+ A FDF+DF+KQ R + MGS+ ++ MIPGM K++ + + EK LK EAMI + Sbjct: 189 DTAGRLQIDPQMMAELAEIKQVVKPDDTLLVVDAMTGQEAANLTHTFHEQIGITGAILTKLDGDTRGGAALSVRQISGQPIKFVGVGEKVEALQPFYPDRLASRILNMGDVLTLVEKAQEAIDVGDVEKLQNKILEATFDFDDFIKQMRFMKNMGSLGGLLKMIPGMNKLSSGDIEKGEKELKRTEAMISS 379
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_SYNE7 (Signal sequence-binding protein OS=Synechococcus elongatus (strain PCC 7942) GN=ffh PE=3 SV=1) HSP 1 Score: 234.572 bits (597), Expect = 2.685e-61 Identity = 121/192 (63.02%), Postives = 151/192 (78.65%), Query Frame = 2 Query: 2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGM-GKITPAQVREAEKSLKIMEAMIEA 574 DTAGRLQID MM+EL VK + P EVLLVVD+M GQEAA+L +F+ IGITGAILTKLDGDSRGGAALS++ VSG+PIK VG GE++E L+PF+P+RMA RILGMGDVL+ VEKAQE + D E+MQ+KI++A FDF DFLKQ R + MGS++ I +IPG+ GKI Q+R+ E+ LK +EAMI + Sbjct: 189 DTAGRLQIDTEMMEELAQVKEAIAPHEVLLVVDSMIGQEAASLTRSFHERIGITGAILTKLDGDSRGGAALSIRRVSGQPIKFVGLGEKVEALQPFHPERMASRILGMGDVLTLVEKAQEEIDLADVEKMQEKILAAKFDFTDFLKQMRLLKNMGSLAGFIKLIPGLGGKINDEQLRQGERQLKRVEAMINS 380
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_STRMU (Signal recognition particle protein OS=Streptococcus mutans GN=ffh PE=3 SV=3) HSP 1 Score: 198.749 bits (504), Expect = 1.633e-50 Identity = 92/167 (55.09%), Postives = 129/167 (77.25%), Query Frame = 2 Query: 2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGM 502 DTAGRLQID+ +M EL+D+K + NP E+LLVVD+M GQEAA + FN ++ +TG ILTK+DGD+RGGAALSV++++GKPIK G GE++ D+E F+PDRM+ RILGMGD+L+ +EKA + ++ + E+ +K+ +FDFNDF++Q V MGSM ++ MIPGM Sbjct: 191 DTAGRLQIDEKLMTELRDIKALANPNEILLVVDSMIGQEAANVAREFNQQLEVTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSSRILGMGDLLTLIEKASQDYDEQKSAELAEKMRENSFDFNDFIEQLDQVQNMGSMEDILKMIPGM 357
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_BACSU (Signal recognition particle protein OS=Bacillus subtilis GN=ffh PE=1 SV=1) HSP 1 Score: 198.364 bits (503), Expect = 2.133e-50 Identity = 95/192 (49.48%), Postives = 142/192 (73.96%), Query Frame = 2 Query: 2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMIEA 574 DTAGRL ID +MDEL +VK + NP E+ LVVD+MTGQ+A + +FN ++G+TG +LTKLDGD+RGGAALS++ V+ PIK G GE+++ LEPF+P+RMA RILGMGDVL+ +EKAQ + ++ A+E+++K+ + +F +DFL+Q V MG + ++ M+PG GK+ + ++ EK L +EA+I++ Sbjct: 191 DTAGRLHIDHELMDELTNVKEIANPEEIFLVVDSMTGQDAVNVAKSFNEQLGLTGVVLTKLDGDTRGGAALSIRAVTNTPIKFAGLGEKLDALEPFHPERMASRILGMGDVLTLIEKAQASVDEDKAKELEQKMRTMSFTLDDFLEQLGQVRNMGPLDELLQMMPGAGKMKGLKNIQVDEKQLNHVEAIIKS 382
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_ECOLI (Signal recognition particle protein OS=Escherichia coli (strain K12) GN=ffh PE=1 SV=1) HSP 1 Score: 197.593 bits (501), Expect = 3.638e-50 Identity = 101/194 (52.06%), Postives = 138/194 (71.13%), Query Frame = 2 Query: 2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSAN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEA 574 DTAGRL +D+AMMDE+K V +NP E L VVDAMTGQ+AA FN + +TG +LTK+DGD+RGGAALS++ ++GKPIK +G GE+ E LEPF+PDR+A RILGMGDVLS +E + + + AE++ K+ + FD NDFL+Q R + MG M+ ++G +PGMG+I P V+ +K L MEA+I + Sbjct: 190 DTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAIINS 382
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_ECOL6 (Signal recognition particle protein OS=Escherichia coli O6 GN=ffh PE=3 SV=1) HSP 1 Score: 197.593 bits (501), Expect = 3.638e-50 Identity = 101/194 (52.06%), Postives = 138/194 (71.13%), Query Frame = 2 Query: 2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSAN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEA 574 DTAGRL +D+AMMDE+K V +NP E L VVDAMTGQ+AA FN + +TG +LTK+DGD+RGGAALS++ ++GKPIK +G GE+ E LEPF+PDR+A RILGMGDVLS +E + + + AE++ K+ + FD NDFL+Q R + MG M+ ++G +PGMG+I P V+ +K L MEA+I + Sbjct: 190 DTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAIINS 382
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_ECO57 (Signal recognition particle protein OS=Escherichia coli O157:H7 GN=ffh PE=3 SV=1) HSP 1 Score: 197.593 bits (501), Expect = 3.638e-50 Identity = 101/194 (52.06%), Postives = 138/194 (71.13%), Query Frame = 2 Query: 2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSAN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEA 574 DTAGRL +D+AMMDE+K V +NP E L VVDAMTGQ+AA FN + +TG +LTK+DGD+RGGAALS++ ++GKPIK +G GE+ E LEPF+PDR+A RILGMGDVLS +E + + + AE++ K+ + FD NDFL+Q R + MG M+ ++G +PGMG+I P V+ +K L MEA+I + Sbjct: 190 DTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAIINS 382
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_AQUAE (Signal recognition particle protein OS=Aquifex aeolicus GN=ffh PE=3 SV=1) HSP 1 Score: 195.667 bits (496), Expect = 1.382e-49 Identity = 94/191 (49.21%), Postives = 135/191 (70.68%), Query Frame = 2 Query: 2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEA 574 DTAGRL +D+ +M EL+++K V NP+E+L V DAM GQ A TF+ +G+TG ++TK+DGD+RGG ALSVKEV G PIK +G GE++ED+EPFYPDR+A RILG+GD+ S VEKAQEV+ ++ A+ M K+M+ FD D + R + +MG + +++ MIPG+ ++ EK K +EA+I + Sbjct: 184 DTAGRLHVDEELMKELQEIKEVTNPSEILYVADAMQGQTALETAKTFHERLGLTGVVITKMDGDARGGLALSVKEVLGVPIKFIGVGEKIEDIEPFYPDRIAQRILGLGDIQSLVEKAQEVITEDKAQVMATKVMTGEFDLEDLREMLRMIQQMGPLDKLLSMIPGVAP-QLKHLKVDEKQFKKIEAIINS 373
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_RICCN (Signal recognition particle protein OS=Rickettsia conorii GN=ffh PE=3 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 1.528e-48 Identity = 91/186 (48.92%), Postives = 136/186 (73.12%), Query Frame = 2 Query: 2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIME 559 DTAGR QIDKAMM+E +K+++ PTE LLV+D+MTGQ+A ++FN ++ I+G IL+++DGDS+GGAALSVK ++ KPIK + GE + DLE F +R+A RIL MGD++SFVEKA ++ +E+AE+ K+ FD ND+L+Q R++ +MG ++ M+PG GKI Q+ +++ + KI+E Sbjct: 191 DTAGRTQIDKAMMEEALAIKKIVEPTETLLVIDSMTGQDAVVTASSFNEKLAISGLILSRIDGDSKGGAALSVKYITKKPIKFLSSGENLIDLEEFDAERLASRILDMGDIISFVEKAASIVDREEAEKTAAKLKKGKFDLNDYLQQMRSIKKMGGFGSILSMLPGSGKIMD-QIDQSKLNSKIIE 375 The following BLAST results are available for this feature:
BLAST of CX289331 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 129
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Sequences
The
following sequences are available for this feature:
EST sequence >CX289331 ID=CX289331; Name=CX289331; organism=Citrus clementina; type=EST; length=576bpback to top |