CX289332

Overview
NameCX289332
Unique NameCX289332
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length530
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289332 vs. ExPASy Swiss-Prot
Match: PROSC_HUMAN (Proline synthetase co-transcribed bacterial homolog protein OS=Homo sapiens GN=PROSC PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 7.602e-33
Identity = 77/159 (48.43%), Postives = 108/159 (67.92%), Query Frame = 2
Query:   77 LRSVIQRVHQAAERSSR--PPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAA-----QLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGR-KPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPN 529
            LR+V +RV QA  R  R  P  + R+VAVSKTKP  ++ + Y  G R FGENYVQE++EKA+      L  +++WHFIG+LQ   V  L+A VPNL M+E+VD+ K+A ++N   +  G  + LKV+VQ+NTSGEESK G+ PS  + +V+H++  CPN
Sbjct:   17 LRAVNERVQQAVARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYVQELLEKASNPKILSLCPEIKWHFIGHLQKQNVNKLMA-VPNLFMLETVDSVKLADKVNSSWQRKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPN 174          
BLAST of CX289332 vs. ExPASy Swiss-Prot
Match: PROSC_PONAB (Proline synthetase co-transcribed bacterial homolog protein OS=Pongo abelii GN=PROSC PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.694e-32
Identity = 76/159 (47.80%), Postives = 108/159 (67.92%), Query Frame = 2
Query:   77 LRSVIQRVHQAAERSSR--PPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAA-----QLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGR-KPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPN 529
            LR+V +RV QA     R  P  + R+VAVSKTKP  ++ + Y  G R FGENYVQE++EKA+      L  +++WHFIG+LQ   V  L+A VPNL ++E+VD+ K+AG++N   +  G  + LKV+VQ+NTSGEESK G+ PS  + +V+H++  CPN
Sbjct:   17 LRAVNERVQQAVALRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYVQELLEKASNPKILSLGPEIKWHFIGHLQKQNVNKLMA-VPNLFVLETVDSVKLAGKVNSSWQKKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPN 174          
BLAST of CX289332 vs. ExPASy Swiss-Prot
Match: PROSC_MOUSE (Proline synthetase co-transcribed bacterial homolog protein OS=Mus musculus GN=Prosc PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.927e-32
Identity = 74/159 (46.54%), Postives = 109/159 (68.55%), Query Frame = 2
Query:   77 LRSVIQRVHQAAERSSR--PPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLP-----DDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMG-RKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPN 529
            LR+V +RV Q+  R  R  P  + R+VAVSKTKP  ++ + Y  G R FGENYVQE++EKA+         +++WHFIG+LQ   V  L+A VPNL+M+E+VD+ K+A ++N   +  G  +PLKV+VQ+NTSGE+SK G+ PS  + +V+H+  +CP+
Sbjct:   17 LRAVNERVQQSVARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYVQELLEKASNPKILSSCPEIKWHFIGHLQKQNVNKLMA-VPNLSMLETVDSVKLADKVNSSWQKKGPTEPLKVMVQINTSGEDSKHGLLPSETIAVVEHIKASCPS 174          
BLAST of CX289332 vs. ExPASy Swiss-Prot
Match: PROSC_BOVIN (Proline synthetase co-transcribed bacterial homolog protein OS=Bos taurus GN=PROSC PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.171e-31
Identity = 74/159 (46.54%), Postives = 106/159 (66.67%), Query Frame = 2
Query:   77 LRSVIQRVHQAAERSSR--PPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLP-----DDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGR-KPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPN 529
            LR+V +RV QA  R  R  P  + R+VAVSKTKP  ++ + Y  G R FGENYVQE++EKA+         +++WHFIG+LQ   V  L+A VPNL+M+E+VD+ K+A ++N   +  G  + LKV+VQ+NTSGE SK G+ P+    LV+H++  CP+
Sbjct:   17 LRAVNERVQQAVARRPRDLPAIQPRLVAVSKTKPADMVIEAYSHGQRTFGENYVQELLEKASNPQILSSCPEIKWHFIGHLQKQNVNKLMA-VPNLSMLETVDSVKLADKVNSAWQKKGSPERLKVMVQINTSGEASKHGLPPAEMAALVEHINAKCPS 174          
BLAST of CX289332 vs. ExPASy Swiss-Prot
Match: PROSC_DICDI (Proline synthetase co-transcribed bacterial homolog protein OS=Dictyostelium discoideum GN=prosc PE=3 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 7.115e-31
Identity = 76/167 (45.51%), Postives = 105/167 (62.87%), Query Frame = 2
Query:   77 LRSVIQRVHQAAERSSRPPDR--IRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD--DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRL----------NRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHV--SQNCPN 529
            L S  + +    E  S   DR  +++VAVSKTKP  +IR +Y+ GHR FGENY+QE+V K+ +L +  +++WHFIG++QSNK K +L  V NL +VE+V+N+KI  +L          N        K L +++QVNTSGEESKSG +P  CL+LVKH     NC N
Sbjct:   10 LISSYKNIKDRVEIISNKFDRHNVKLVAVSKTKPTEMIRILYDKGHRHFGENYIQELVSKSEELSELNEIKWHFIGSIQSNKSK-ILTSVKNLYVVETVENKKILDKLAKSLLNNEENNNNNNNNNNKKLNIMIQVNTSGEESKSGCKPEECLDLVKHCLEDNNCKN 175          
BLAST of CX289332 vs. ExPASy Swiss-Prot
Match: Y112_PASMU (UPF0001 protein PM0112 OS=Pasteurella multocida GN=PM0112 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.136e-28
Identity = 71/154 (46.10%), Postives = 98/154 (63.64%), Query Frame = 2
Query:   77 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKA---AQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPN 529
            L  + Q +  A +++ RP   ++++AVSKTKPV  I Q Y+AG   FGENYVQE VEK    AQ    LEWHFIG LQSNK K +     +   ++++D +KIA RLN       +KPL VL+Q+N S E+SKSG++P+  L+L K + QN P+
Sbjct:    7 LAQIQQNIQHAVQQAKRPESAVKLLAVSKTKPVEDIYQAYQAGQTAFGENYVQEGVEKIQYFAQKNIPLEWHFIGPLQSNKTKLV---AEHFDWMQTLDRKKIADRLNEQ-RPHYKKPLNVLIQINISDEDSKSGIQPNEMLDLAKQI-QNLPH 155          
BLAST of CX289332 vs. ExPASy Swiss-Prot
Match: YKC9_SCHPO (UPF0001 protein C644.09 OS=Schizosaccharomyces pombe GN=SPAC644.09 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 9.617e-28
Identity = 64/124 (51.61%), Postives = 85/124 (68.55%), Query Frame = 2
Query:  140 IRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHV 511
            + +VAVSK  PV  + + Y AG R FGENY+QE ++K   +PDD++WHFIG+LQS+K K  +A V NL  +E++D EK A  +N   E + + PL V +QVNTSGEE+K GV PS  LEL K V
Sbjct:   24 VLLVAVSKFHPVETLMEAYNAGQRHFGENYMQEFLKKVELMPDDVQWHFIGSLQSSKCKK-IASVKNLYSIETIDTEKKARLVNSAREAL-QLPLNVYIQVNTSGEENKGGVTPSKVLELCKQV 145          
BLAST of CX289332 vs. ExPASy Swiss-Prot
Match: Y090_HAEIN (UPF0001 protein HI0090 OS=Haemophilus influenzae GN=HI0090 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.798e-27
Identity = 67/154 (43.51%), Postives = 95/154 (61.69%), Query Frame = 2
Query:   77 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD---DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPN 529
            L  + Q++  A +  +R  + ++++AVSKTKP+S I   Y+AG   FGENYVQE VEK         +LEWHFIG LQSNK + +     +   ++++D  KIA RLN    T  + PL VL+Q+N S EESKSG++P   L L KH+ +N P+
Sbjct:    7 LNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQEGVEKIQYFESQGINLEWHFIGPLQSNKTRLV---AEHFDWMQTLDRAKIADRLNEQRPT-NKAPLNVLIQINISDEESKSGIQPEEMLTLAKHI-ENLPH 155          
BLAST of CX289332 vs. ExPASy Swiss-Prot
Match: Y394_PSEAE (UPF0001 protein PA0394 OS=Pseudomonas aeruginosa GN=PA0394 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.535e-25
Identity = 66/148 (44.59%), Postives = 88/148 (59.46%), Query Frame = 2
Query:   77 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD-DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQ 517
            +  V  R+ +AA+ + R P  + ++AVSKTKP + +R+ + AG R FGENY+QE + K A+L D  L WHFIG +QSNK +P+     +   V SVD  KIA RL+      G  PL V +QVN SGE SKSG  P     L + V Q
Sbjct:    8 IAKVAARIREAAQAAGRDPATVGLLAVSKTKPAAAVREAHAAGLRDFGENYLQEALGKQAELADLPLNWHFIGPIQSNKTRPI---AEHFQWVHSVDRLKIAQRLSEQ-RPAGLPPLNVCLQVNVSGEASKSGCAPEDLPALAEAVKQ 151          
BLAST of CX289332 vs. ExPASy Swiss-Prot
Match: YPI1_VIBAL (UPF0001 protein in pilT-proC intergenic region OS=Vibrio alginolyticus PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 9.952e-25
Identity = 65/152 (42.76%), Postives = 92/152 (60.53%), Query Frame = 2
Query:   77 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEK----AAQLPDD-LEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQ 517
            +  +  ++    ++  R P+ ++++AVSKTKPV  I + Y+AG   FGENYVQE V K    A   PD+ +EWHFIG +QSNK + +     +   V ++D  KIA RLN        KPL+VL+QVNTSGE SKSGV  +   EL + +S+
Sbjct:    8 IEHITSQIRYDEQKCGRTPESVQLLAVSKTKPVEAILEAYQAGQTAFGENYVQEGVSKVQHFAEHYPDNRIEWHFIGPIQSNKSRLV---AEHFDWVHTIDRTKIAQRLNDQ-RPSELKPLQVLIQVNTSGEASKSGVTEAEVFELAELISR 155          
The following BLAST results are available for this feature:
BLAST of CX289332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
PROSC_HUMAN7.602e-3348.43Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_PONAB1.694e-3247.80Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_MOUSE4.927e-3246.54Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_BOVIN4.171e-3146.54Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_DICDI7.115e-3145.51Proline synthetase co-transcribed bacterial homolo... [more]
Y112_PASMU1.136e-2846.10UPF0001 protein PM0112 OS=Pasteurella multocida GN... [more]
YKC9_SCHPO9.617e-2851.61UPF0001 protein C644.09 OS=Schizosaccharomyces pom... [more]
Y090_HAEIN2.798e-2743.51UPF0001 protein HI0090 OS=Haemophilus influenzae G... [more]
Y394_PSEAE1.535e-2544.59UPF0001 protein PA0394 OS=Pseudomonas aeruginosa G... [more]
YPI1_VIBAL9.952e-2542.76UPF0001 protein in pilT-proC intergenic region OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02011G09SK IF1 Citrus clementina cDNA clone C02011G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289332 ID=CX289332; Name=CX289332; organism=Citrus clementina; type=EST; length=530bp
GAATCATATCAACGAACAAGTAGAAGCAGAAACCATGGCTGCGTCTGCCG
CCACAGATGGCGTTGCAGCGACGGCGCTTCGGTCCGTGATCCAACGGGTC
CACCAAGCCGCCGAGAGATCCAGTCGCCCGCCGGACCGGATTCGAATCGT
CGCTGTCAGCAAAACCAAACCGGTCTCAGTAATCCGTCAGGTTTATGAGG
CCGGTCACCGATGTTTCGGTGAAAACTACGTTCAAGAAATAGTGGAAAAG
GCGGCTCAGCTTCCAGATGATCTAGAATGGCATTTCATTGGGAACCTGCA
GAGCAATAAAGTGAAACCTTTATTGGCTGGTGTGCCTAACCTGGCAATGG
TAGAAAGTGTGGACAACGAGAAGATTGCAGGTCGTCTTAATCGTATGGTT
GAAACCATGGGAAGGAAGCCTTTAAAAGTCTTGGTTCAAGTGAATACCAG
TGGAGAAGAATCGAAATCTGGAGTTGAGCCTTCAGGGTGTCTGGAACTTG
TGAAACATGTTAGTCAAAACTGTCCGAATC
back to top