CX289333

Overview
NameCX289333
Unique NameCX289333
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289333 vs. ExPASy Swiss-Prot
Match: GDL76_ARATH (GDSL esterase/lipase At5g14450 OS=Arabidopsis thaliana GN=At5g14450 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.006e-32
Identity = 54/82 (65.85%), Postives = 68/82 (82.93%), Query Frame = 3
Query:  183 GYADPFKVCCGYHENYDHVWCGNKATINKTEVYGASCEDPSKSISWDGVHYTQAVNQWVANHTLYGSLTDPPIPITQACHRQ 428
            G+A+P KVCCGYHE YDH+WCGNK  +N TE+YG SC +P  ++SWDGVHYT+A N+ VA+ TL G LTDPP+PIT+AC+RQ
Sbjct:  308 GFANPLKVCCGYHEKYDHIWCGNKGKVNNTEIYGGSCPNPVMAVSWDGVHYTEAANKHVADRTLNGLLTDPPVPITRACYRQ 389          
BLAST of CX289333 vs. ExPASy Swiss-Prot
Match: GDL54_ARATH (GDSL esterase/lipase At3g27950 OS=Arabidopsis thaliana GN=At3g27950 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.164e-14
Identity = 35/79 (44.30%), Postives = 48/79 (60.76%), Query Frame = 3
Query:  183 GYADPFKVCCGYHENYDHVWCGNKATINKTEVYGASCEDPSKSISWDGVHYTQAVNQWVANHTLYGSLTDPPIPITQAC 419
            G+ DPF  CC        + CG    +N TE+Y +SC++    ISWDG+HYT+  N  VAN  L GS++DPP+P  +AC
Sbjct:  289 GFIDPFDYCCVGAIGRG-MGCGKTIFLNGTELYSSSCQNRKNFISWDGIHYTETANMLVANRILDGSISDPPLPTQKAC 366          
BLAST of CX289333 vs. ExPASy Swiss-Prot
Match: EST_HEVBR (Esterase OS=Hevea brasiliensis PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.455e-12
Identity = 31/85 (36.47%), Postives = 48/85 (56.47%), Query Frame = 3
Query:  183 GYADPFKVCCGYHENYDH---VWCGNKATINK-TEVYGASCEDPSKSISWDGVHYTQAVNQWVANHTLYGSLTDPPIPITQACHR 425
            G+  P   CCGY   Y+      CG+  T +  T++   SC  PS  ++WDG HYT+A N++  +    G+ +DPP+P+  ACH+
Sbjct:  297 GFEFPLITCCGYGGKYNFSVTAPCGDTVTADDGTKIVVGSCACPSVRVNWDGAHYTEAANEYFFDQISTGAFSDPPVPLNMACHK 381          
BLAST of CX289333 vs. ExPASy Swiss-Prot
Match: GDL53_ARATH (GDSL esterase/lipase At3g26430 OS=Arabidopsis thaliana GN=At3g26430 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.512e-12
Identity = 32/85 (37.65%), Postives = 46/85 (54.12%), Query Frame = 3
Query:  183 GYADPFKVCCGYHENYDH---VWCGNKATINKTEVYGA-SCEDPSKSISWDGVHYTQAVNQWVANHTLYGSLTDPPIPITQACHR 425
            G+  P   CCG+   Y+    + CG K  I   E+  A SC D S  +SWDG+H+T+  N W+      G+ +DPP+P+  AC R
Sbjct:  296 GFRYPLVACCGHGGKYNFNKLIKCGAKVMIKGKEIVLAKSCNDVSFRVSWDGIHFTETTNSWIFQQINDGAFSDPPLPVKSACTR 380          
The following BLAST results are available for this feature:
BLAST of CX289333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GDL76_ARATH3.006e-3265.85GDSL esterase/lipase At5g14450 OS=Arabidopsis thal... [more]
GDL54_ARATH2.164e-1444.30GDSL esterase/lipase At3g27950 OS=Arabidopsis thal... [more]
EST_HEVBR3.455e-1236.47Esterase OS=Hevea brasiliensis PE=1 SV=1[more]
GDL53_ARATH4.512e-1237.65GDSL esterase/lipase At3g26430 OS=Arabidopsis thal... [more]
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Properties
Property NameValue
Genbank descriptionC02011G10SK IF1 Citrus clementina cDNA clone C02011G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289333 ID=CX289333; Name=CX289333; organism=Citrus clementina; type=EST; length=542bp
GTGCTTTTGTTTAAGAATGACAGTGCAAATTTCATATTTTGTTGTAAAAA
TCCTCCTTTACTGTCCCTGCAGTGTACTTATGCTAAAATGTAGCATTCAA
GCTTTTACTGTTGCAGTGCTATTACCAAAATCACGATTCTTGTGTGGATG
ATCAAATATATGTTTTTGATTTACTTTATACAGGTTATGCTGATCCATTT
AAGGTCTGCTGTGGGTATCATGAGAACTATGACCATGTGTGGTGTGGAAA
CAAGGCAACAATCAACAAAACTGAAGTGTATGGGGCTTCTTGTGAAGACC
CTTCAAAATCTATTAGCTGGGATGGTGTACACTATACGCAGGCTGTGAAT
CAGTGGGTTGCTAATCATACTCTTTATGGTTCACTGACAGACCCGCCAAT
TCCAATCACCCAAGCGTGTCATAGGCAGTGAGGGTATTTGTCAGTCATAC
ATGGTCGATAGAGATTTTTGGGGAGTTCATAGTGAAAATTTCAAGTATTT
TTGGTACAAGAGAGCAGCGGATCAGTAAGTTTTCTCTATATG
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