CX289335

Overview
NameCX289335
Unique NameCX289335
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length517
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX289335 vs. ExPASy Swiss-Prot
Match: RS263_ARATH (40S ribosomal protein S26-3 OS=Arabidopsis thaliana GN=RPS26C PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.205e-18
Identity = 41/60 (68.33%), Postives = 44/60 (73.33%), Query Frame = 3 
Query:   42 MTFXXXXXXXXXXXXXXVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 221
            MTF              VK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct:    1 MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

HSP 2 Score: 28.1054 bits (61), Expect = 1.205e-18
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  223 YCVSCAIHSH 252
            YCVSCAIHSH
Sbjct:   73 YCVSCAIHSH 82
[Close]
BLAST of CX289335 vs. ExPASy Swiss-Prot
Match: RS26_ORYSJ (40S ribosomal protein S26 OS=Oryza sativa subsp. japonica GN=RPS26 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 2.035e-18
Identity = 41/60 (68.33%), Postives = 44/60 (73.33%), Query Frame = 3 
Query:   42 MTFXXXXXXXXXXXXXXVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 221
            MTF              VK+IRCSNC KCCPKDKAIKRF VRNIVEQAA+RDVQEACV+D
Sbjct:    1 MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD 60

HSP 2 Score: 25.0238 bits (53), Expect = 2.035e-18
Identity = 8/10 (80.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  223 YCVSCAIHSH 252
            +CVSCAIH+H
Sbjct:   73 HCVSCAIHAH 82
[Close]
BLAST of CX289335 vs. ExPASy Swiss-Prot
Match: RS262_ARATH (40S ribosomal protein S26-2 OS=Arabidopsis thaliana GN=RPS26B PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 4.475e-18
Identity = 40/60 (66.67%), Postives = 43/60 (71.67%), Query Frame = 3 
Query:   42 MTFXXXXXXXXXXXXXXVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 221
            MTF              V  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct:    1 MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

HSP 2 Score: 28.1054 bits (61), Expect = 4.475e-18
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  223 YCVSCAIHSH 252
            YCVSCAIHSH
Sbjct:   73 YCVSCAIHSH 82
[Close]
BLAST of CX289335 vs. ExPASy Swiss-Prot
Match: RS261_ARATH (40S ribosomal protein S26-1 OS=Arabidopsis thaliana GN=RPS26A PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 4.484e-18
Identity = 40/60 (66.67%), Postives = 43/60 (71.67%), Query Frame = 3 
Query:   42 MTFXXXXXXXXXXXXXXVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 221
            MTF              V  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct:    1 MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

HSP 2 Score: 28.1054 bits (61), Expect = 4.484e-18
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  223 YCVSCAIHSH 252
            YCVSCAIHSH
Sbjct:   73 YCVSCAIHSH 82
[Close]
BLAST of CX289335 vs. ExPASy Swiss-Prot
Match: RS26_OCTVU (40S ribosomal protein S26 OS=Octopus vulgaris GN=RPS26 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.992e-14
Identity = 31/47 (65.96%), Postives = 40/47 (85.11%), Query Frame = 3 
Query:   93 VKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDVLRL 233
            VK+IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ +A VY+V  L
Sbjct:   18 VKYIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISDASVYEVYAL 64

HSP 2 Score: 25.409 bits (54), Expect = 1.992e-14
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 1 
Query:  217 MTYCVSCAIHS 249
            + YCVSCAIHS
Sbjct:   71 LLYCVSCAIHS 81
[Close]
BLAST of CX289335 vs. ExPASy Swiss-Prot
Match: RS26_CAEEL (40S ribosomal protein S26 OS=Caenorhabditis elegans GN=rps-26 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.419e-14
Identity = 34/59 (57.63%), Postives = 40/59 (67.80%), Query Frame = 3 
Query:   42 MTFXXXXXXXXXXXXXXVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVY 218
            MTF              V FIRC+NCG+CCPKDKAIK+F+VRNIVE AAVRD+ +A  Y
Sbjct:    1 MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAY 59

HSP 2 Score: 23.483 bits (49), Expect = 4.419e-14
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 1 
Query:  223 YCVSCAIHS 249
            YC++CAIHS
Sbjct:   73 YCIACAIHS 81
[Close]
BLAST of CX289335 vs. ExPASy Swiss-Prot
Match: RS26_SCHCO (40S ribosomal protein S26 OS=Schizophyllum commune GN=RPS26 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 2.735e-13
Identity = 28/42 (66.67%), Postives = 34/42 (80.95%), Query Frame = 3 
Query:   93 VKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVY 218
            V F+RCSNC +C  KDKAIKRF VRN+VE AA+RD+ +A VY
Sbjct:   18 VTFVRCSNCSRCVAKDKAIKRFTVRNMVESAAIRDISDASVY 59

HSP 2 Score: 28.4906 bits (62), Expect = 2.735e-13
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1 
Query:  217 MTYCVSCAIHSH 252
            + YCVSCAIHSH
Sbjct:   71 IAYCVSCAIHSH 82
[Close]
BLAST of CX289335 vs. ExPASy Swiss-Prot
Match: RS26_RAT (40S ribosomal protein S26 OS=Rattus norvegicus GN=Rps26 PE=3 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 7.922e-13
Identity = 29/43 (67.44%), Postives = 37/43 (86.05%), Query Frame = 3 
Query:   93 VKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 221
            V+ IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ EA V+D
Sbjct:   18 VQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFD 60

HSP 2 Score: 25.409 bits (54), Expect = 7.922e-13
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 1 
Query:  211 VFMTYCVSCAIHS 249
            V + YCVSCAIHS
Sbjct:   69 VKLHYCVSCAIHS 81
[Close]
BLAST of CX289335 vs. ExPASy Swiss-Prot
Match: RS26_PIG (40S ribosomal protein S26 OS=Sus scrofa GN=RPS26 PE=3 SV=4)

HSP 1 Score: 67.3958 bits (163), Expect = 7.922e-13
Identity = 29/43 (67.44%), Postives = 37/43 (86.05%), Query Frame = 3 
Query:   93 VKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 221
            V+ IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ EA V+D
Sbjct:   18 VQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFD 60

HSP 2 Score: 25.409 bits (54), Expect = 7.922e-13
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 1 
Query:  211 VFMTYCVSCAIHS 249
            V + YCVSCAIHS
Sbjct:   69 VKLHYCVSCAIHS 81
[Close]
BLAST of CX289335 vs. ExPASy Swiss-Prot
Match: RS26_MOUSE (40S ribosomal protein S26 OS=Mus musculus GN=Rps26 PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 7.922e-13
Identity = 29/43 (67.44%), Postives = 37/43 (86.05%), Query Frame = 3 
Query:   93 VKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 221
            V+ IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ EA V+D
Sbjct:   18 VQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFD 60

HSP 2 Score: 25.409 bits (54), Expect = 7.922e-13
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 1 
Query:  211 VFMTYCVSCAIHS 249
            V + YCVSCAIHS
Sbjct:   69 VKLHYCVSCAIHS 81
The following BLAST results are available for this feature:
BLAST of CX289335 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
RS263_ARATH1.205e-1868.3340S ribosomal protein S26-3 OS=Arabidopsis thalian... [more]
RS26_ORYSJ2.035e-1868.3340S ribosomal protein S26 OS=Oryza sativa subsp. j... [more]
RS262_ARATH4.475e-1866.6740S ribosomal protein S26-2 OS=Arabidopsis thalian... [more]
RS261_ARATH4.484e-1866.6740S ribosomal protein S26-1 OS=Arabidopsis thalian... [more]
RS26_OCTVU1.992e-1465.9640S ribosomal protein S26 OS=Octopus vulgaris GN=R... [more]
RS26_CAEEL4.419e-1457.6340S ribosomal protein S26 OS=Caenorhabditis elegan... [more]
RS26_SCHCO2.735e-1366.6740S ribosomal protein S26 OS=Schizophyllum commune... [more]
RS26_RAT7.922e-1367.4440S ribosomal protein S26 OS=Rattus norvegicus GN=... [more]
RS26_PIG7.922e-1367.4440S ribosomal protein S26 OS=Sus scrofa GN=RPS26 P... [more]
RS26_MOUSE7.922e-1367.4440S ribosomal protein S26 OS=Mus musculus GN=Rps26... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02011G12SK IF1 Citrus clementina cDNA clone C02011G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289335 ID=CX289335; Name=CX289335; organism=Citrus clementina; type=EST; length=517bp
GAAACAACAAGCAGCAGCGGCGCAACAAAAACAACAACAAGATGACGTTC
AAGCGGAGGAACGGAGGAAGGAACAAGCACGGCCGTGGCCACGTCAAGTT
CATCCGCTGCTCTAACTGCGGCAAATGCTGCCCTAAGGACAAGGCGATTA
AGAGGTTTTTGGTGAGGAACATTGTTGAGCAAGCTGCTGTTAGGGATGTT
CAGGAGGCGTGTGTTTATGACGTACTGCGTCTCGTGTGCGATCCACTCTC
ATGTGGTGAGAGTTCGTTCCCGTACTAACAGGAGGATCCGTGAGCCCCCG
CAACGCTTCAGGCGCAGGGATGATGTCCCAAAGGCTGGTGGTGCTCTTGG
TCAAGGCCCACGAGCTGGTGGTCCAGCTGGAGCTCCAGCTGCTGCTCGTG
CTTGAAAGCTTTCTGCTGTCAGTGCTTCTGGTCCTTTGAGGCTTTTGAGA
TTTTTATGTGGTGGTATCAGATATGTGGGTCTGTTTAATTAGAGCACTGC
AAACTTTTATGTTAGTT
back to top