CX289369

Overview
NameCX289369
Unique NameCX289369
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length384
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289369 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.096e-33
Identity = 66/103 (64.08%), Postives = 76/103 (73.79%), Query Frame = 1
Query:   76 AALKLVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYK 384
            A  KL   + LCM V+    A AITCGQVT SLAPCI Y+RSGG +P  CCNG+R++N  ARTT DRQTACNCLK  AGSI  +NPNNA GLP  CGV++PYK
Sbjct:    5 AVTKLALVVALCMAVS---VAHAITCGQVTSSLAPCIGYVRSGGAVPPACCNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYK 104          
BLAST of CX289369 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.096e-33
Identity = 63/103 (61.17%), Postives = 79/103 (76.70%), Query Frame = 1
Query:   76 AALKLVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYK 384
            A  KL   + LCM+V+ P+ AQAITCGQV+ +LAPCI Y+R GG +P  CCNG+R++N  ARTTPDRQ ACNCLKQ + S+P +NPNNA  LP  CGV+IPY+
Sbjct:    5 AMTKLALVVALCMVVSVPI-AQAITCGQVSSNLAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQ 106          
BLAST of CX289369 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.915e-32
Identity = 60/103 (58.25%), Postives = 78/103 (75.73%), Query Frame = 1
Query:   76 AALKLVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYK 384
            A  KL   + LCM+V+ P+ AQA+TCGQV+ +LAPCI Y+R GG +P  CCNG+R++N  A+TT DRQTACNCLKQ + S+P +N NNA  LP  CGV++PYK
Sbjct:    5 AMTKLALVVALCMVVSVPI-AQALTCGQVSSNLAPCIAYVRGGGAVPPACCNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYK 106          
BLAST of CX289369 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.230e-30
Identity = 58/103 (56.31%), Postives = 74/103 (71.84%), Query Frame = 1
Query:   76 AALKLVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYK 384
            A +KL   + LCM V+    A AITC QV+ +LAPCI Y+RSGG +P  CCNG++++N  A+TTPDRQ ACNCLK  AGS+  +NP NA  LP  CGV++PYK
Sbjct:    5 AVIKLALVVALCMAVS---VAHAITCSQVSANLAPCINYVRSGGAVPPACCNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYK 104          
BLAST of CX289369 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 4.686e-29
Identity = 55/80 (68.75%), Postives = 65/80 (81.25%), Query Frame = 1
Query:  145 ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYK 384
            ITCGQV+ SLAPCI Y+R GG +P  CCNG+R++N  ARTTPDR+TACNCLKQ +GSI  +NPNNA  LP  CGV+IPYK
Sbjct:    1 ITCGQVSSSLAPCIGYVRGGGAVPPACCNGIRNVNNLARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYK 80          
BLAST of CX289369 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.121e-29
Identity = 61/96 (63.54%), Postives = 71/96 (73.96%), Query Frame = 1
Query:  100 LVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVP-CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYK 384
            LV+CM+V  P++  AI+CG VT  L+PC+ YL +GGP P P CC GV+ L AAA TTPDRQ ACNCLK AAGSI  LN NNA  LP  CGV+IPYK
Sbjct:    4 LVMCMVVIAPMAEGAISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYK 98          
BLAST of CX289369 vs. ExPASy Swiss-Prot
Match: NLTP2_LENCU (Non-specific lipid-transfer protein 2 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.121e-29
Identity = 61/96 (63.54%), Postives = 71/96 (73.96%), Query Frame = 1
Query:  100 LVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVP-CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYK 384
            LV+CM+V  P++  AI+CG VT  L+PC+ YL +GGP P P CC GV+ L AAA TTPDRQ ACNCLK AAGSI  LN NNA  LP  CGV+IPYK
Sbjct:   12 LVICMVVIAPMAEGAISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYK 106          
BLAST of CX289369 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.994e-29
Identity = 61/96 (63.54%), Postives = 70/96 (72.92%), Query Frame = 1
Query:  100 LVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVP-CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYK 384
            LV+CM+V  P++  AI+CG VT  L+PC+ YL +GGP P P CC GV+ L AAA TTPDRQ ACNCLK AAGSI  LN NNA  LP  CGV IPYK
Sbjct:   12 LVMCMVVIAPMAEGAISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVDIPYK 106          
BLAST of CX289369 vs. ExPASy Swiss-Prot
Match: NLTP3_BRANA (Non-specific lipid-transfer protein 3 OS=Brassica napus GN=LTP3 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.994e-29
Identity = 61/106 (57.55%), Postives = 76/106 (71.70%), Query Frame = 1
Query:   73 MAALKLVSALVL-CMLVTGPLSAQA-ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYK 384
            MA L  +S LVL CM+V GP++  A ++CG V+G+LA CI YL   GP+P  CC+GV SLN  ARTTPDRQ AC CL  AA ++P +N   A GLP+ACGV+IPYK
Sbjct:    1 MAGLVKLSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPVPTACCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYK 106          
BLAST of CX289369 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.364e-28
Identity = 53/80 (66.25%), Postives = 63/80 (78.75%), Query Frame = 1
Query:  145 ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYK 384
            ITCGQV+ +LAPCI Y+R GG +P  CCNG+R++N  ARTTPDRQ ACNCLKQ + S+P +NPNNA  LP  CGV IPYK
Sbjct:    1 ITCGQVSSALAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYK 80          
The following BLAST results are available for this feature:
BLAST of CX289369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
NLTP_MALDO4.096e-3364.08Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP1_PRUDU4.096e-3361.17Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_PRUAV5.915e-3258.25Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP_PYRCO7.230e-3056.31Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP1_PRUAR4.686e-2968.75Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP4_LENCU6.121e-2963.54Non-specific lipid-transfer protein 4 (Fragment) O... [more]
NLTP2_LENCU6.121e-2963.54Non-specific lipid-transfer protein 2 OS=Lens culi... [more]
NLTP6_LENCU7.994e-2963.54Non-specific lipid-transfer protein 6 OS=Lens culi... [more]
NLTP3_BRANA7.994e-2957.55Non-specific lipid-transfer protein 3 OS=Brassica ... [more]
NLTP1_PRUPE1.364e-2866.25Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]

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Properties
Property NameValue
Genbank descriptionC02012C06SK IF1 Citrus clementina cDNA clone C02012C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289369 ID=CX289369; Name=CX289369; organism=Citrus clementina; type=EST; length=384bp
AACACAGCTAGCCATAAACAAAGGCAAAAAAAAAAAAGAAAAAGAAAAAG
AAAATCTCAGGAGAAATCTCAAATGGCTGCCCTCAAGCTTGTTTCAGCTT
TGGTTCTGTGCATGTTGGTGACTGGTCCCCTGAGTGCTCAGGCCATAACA
TGTGGGCAGGTGACTGGCTCATTGGCACCATGCATCGTTTACTTGAGATC
GGGCGGCCCTATACCTGTGCCATGCTGCAACGGCGTCAGGTCTCTCAACG
CTGCCGCCAGAACCACACCTGACCGCCAAACTGCATGCAACTGCTTGAAG
CAAGCCGCCGGATCAATCCCTAACCTCAACCCTAATAATGCTGTTGGTCT
TCCACGAGCTTGTGGAGTCAGCATTCCTTACAAG
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