CX289373

Overview
NameCX289373
Unique NameCX289373
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length372
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289373 vs. ExPASy Swiss-Prot
Match: RH5_ORYSJ (DEAD-box ATP-dependent RNA helicase 5 OS=Oryza sativa subsp. japonica GN=Os07g0301200 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 3.752e-55
Identity = 101/123 (82.11%), Postives = 112/123 (91.06%), Query Frame = 3
Query:    3 LENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHVK 371
            +E ML+R GW  V++HG KAQH+RTK+LSLFKEG+CPLM+ATDVA+RGLDIPDVEVVINYS+PLTTEDYVHRIGRTGRAGKKGV+HTFFT  NK LAGELVNVLREA QVVP AL KFGTHVK
Sbjct:  358 VETMLQRRGWSAVSVHGDKAQHDRTKALSLFKEGSCPLMIATDVASRGLDIPDVEVVINYSYPLTTEDYVHRIGRTGRAGKKGVAHTFFTQENKGLAGELVNVLREAGQVVPPALTKFGTHVK 480          
BLAST of CX289373 vs. ExPASy Swiss-Prot
Match: RH5_ARATH (DEAD-box ATP-dependent RNA helicase 5 OS=Arabidopsis thaliana GN=RH5 PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 7.077e-54
Identity = 103/123 (83.74%), Postives = 111/123 (90.24%), Query Frame = 3
Query:    3 LENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHVK 371
            LE  L++ GWK V+IHG KAQ ERT+SLSLFKEG+CPL+VATDVAARGLDIPDVEVVINY+FPLTTEDYVHRIGRTGRAGKKGV+HTFFT  NK LAGELVNVLREA QVVP  LLKFGTHVK
Sbjct:  382 LERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFTPLNKGLAGELVNVLREAGQVVPADLLKFGTHVK 504          
BLAST of CX289373 vs. ExPASy Swiss-Prot
Match: DBP3_PICGU (ATP-dependent RNA helicase DBP3 OS=Pichia guilliermondii GN=DBP3 PE=3 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 2.611e-40
Identity = 81/123 (65.85%), Postives = 96/123 (78.05%), Query Frame = 3
Query:    3 LENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHVK 371
            +E MLRRSG+ V AIHG  +Q +RT +L  FK G   L++ATDVAARGLDIP+V+VVIN +FPLT EDYVHRIGRTGRAG+ G++HT FT H K L+G L+NVLR A Q VPD LLKFG H K
Sbjct:  386 VEAMLRRSGFNVAAIHGDLSQQQRTSALDSFKRGDSNLLLATDVAARGLDIPNVKVVINLTFPLTVEDYVHRIGRTGRAGQTGIAHTLFTEHEKHLSGALMNVLRGAGQPVPDELLKFGGHTK 508          
BLAST of CX289373 vs. ExPASy Swiss-Prot
Match: DBP3_PHANO (ATP-dependent RNA helicase DBP3 OS=Phaeosphaeria nodorum GN=DBP3 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 3.410e-40
Identity = 79/123 (64.23%), Postives = 99/123 (80.49%), Query Frame = 3
Query:    3 LENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHVK 371
            +EN +R  G++V  IHG  +Q +R+ SL+ FKEG  PL+VATDVAARGLDIP V++VIN +FPLT EDYVHRIGRTGRAGK+G++ TFFT H+K L+G L+NVL+ A Q VP+ LLKFGT VK
Sbjct:  444 IENFIRMKGFRVGGIHGDLSQEKRSASLAAFKEGQVPLLVATDVAARGLDIPAVKLVINVTFPLTAEDYVHRIGRTGRAGKEGLAITFFTEHDKGLSGSLINVLKAANQEVPEELLKFGTTVK 566          
BLAST of CX289373 vs. ExPASy Swiss-Prot
Match: DBP3_DEBHA (ATP-dependent RNA helicase DBP3 OS=Debaryomyces hansenii GN=DBP3 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.296e-39
Identity = 78/123 (63.41%), Postives = 96/123 (78.05%), Query Frame = 3
Query:    3 LENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHVK 371
            +EN+L R+ +KV A+HG  +Q +RT +L  FK G   L++ATDVAARGLDIP+V+VVIN +FPLT EDYVHRIGRTGRAG+ G++HT FT H K L+G L+NVLR A Q VPD LLKFG H K
Sbjct:  379 IENLLVRNSFKVSAVHGDLSQQQRTSALGAFKAGKTTLLLATDVAARGLDIPNVKVVINLTFPLTVEDYVHRIGRTGRAGQTGIAHTLFTEHEKHLSGALMNVLRGANQPVPDELLKFGGHTK 501          
BLAST of CX289373 vs. ExPASy Swiss-Prot
Match: DBP3_PICST (ATP-dependent RNA helicase DBP3 OS=Pichia stipitis GN=DBP3 PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.692e-39
Identity = 77/123 (62.60%), Postives = 96/123 (78.05%), Query Frame = 3
Query:    3 LENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHVK 371
            +E +LRR+ + V AIHG  +Q +RT +L+ FK+G   L++ATDVAARGLDIP+V+VVIN +FPLT EDYVHRIGRTGRAG+ G +HT FT H K L+G L+N+LR A Q VPD LLKFG H K
Sbjct:  378 IEGLLRRNSYNVAAIHGDLSQQQRTNALNSFKKGESSLLLATDVAARGLDIPNVKVVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEHEKHLSGALMNILRGANQPVPDELLKFGGHTK 500          
BLAST of CX289373 vs. ExPASy Swiss-Prot
Match: DBP3_BOTFB (ATP-dependent RNA helicase dbp3 OS=Botryotinia fuckeliana (strain B05.10) GN=dbp3 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.770e-39
Identity = 77/123 (62.60%), Postives = 97/123 (78.86%), Query Frame = 3
Query:    3 LENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHVK 371
            +E+ +R+ G++V  IHG  +Q +RT+SL  FK G  P++VATDVAARGLDIP V++VIN +FPLT EDYVHRIGRTGRAGK G++ T FT H+KA +G L+NVL+ A Q VPD LLKFGT VK
Sbjct:  444 VESFIRQKGFRVAGIHGDLSQEQRTRSLEAFKSGNTPVLVATDVAARGLDIPAVKLVINCTFPLTVEDYVHRIGRTGRAGKDGLAITLFTEHDKAQSGALINVLKAANQPVPDELLKFGTTVK 566          
BLAST of CX289373 vs. ExPASy Swiss-Prot
Match: DBP3_SCLS1 (ATP-dependent RNA helicase dbp3 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp3 PE=3 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 4.924e-39
Identity = 77/123 (62.60%), Postives = 96/123 (78.05%), Query Frame = 3
Query:    3 LENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHVK 371
            +E  +R+ G++V  IHG  +Q +RT+SL  FK G  P++VATDVAARGLDIP V++VIN +FPLT EDYVHRIGRTGRAGK G++ T FT H+KA +G L+NVL+ A Q VPD LLKFGT VK
Sbjct:  448 VEGFIRQKGFRVAGIHGDLSQEQRTRSLEAFKSGNTPVLVATDVAARGLDIPAVKLVINCTFPLTVEDYVHRIGRTGRAGKDGLAITLFTEHDKAQSGALINVLKAANQPVPDELLKFGTTVK 570          
BLAST of CX289373 vs. ExPASy Swiss-Prot
Match: DBP3_LODEL (ATP-dependent RNA helicase DBP3 OS=Lodderomyces elongisporus GN=DBP3 PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 8.398e-39
Identity = 75/123 (60.98%), Postives = 97/123 (78.86%), Query Frame = 3
Query:    3 LENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHVK 371
            +E++L R+ +KV AIHG  +Q +RT++L  FK G C L++ATDVAARGLDIP+V+ VIN +FPLT EDYVHR+GRTGRAG+ G++HTFFT   K L+G L N+LR A Q VP+ALLK+G H K
Sbjct:  390 IESLLHRNKFKVAAIHGDLSQQQRTQALQSFKSGECNLLLATDVAARGLDIPNVKYVINLTFPLTIEDYVHRLGRTGRAGQTGIAHTFFTEDEKHLSGALCNILRGANQPVPEALLKYGGHTK 512          
BLAST of CX289373 vs. ExPASy Swiss-Prot
Match: DBP3_NEUCR (ATP-dependent RNA helicase dbp-3 OS=Neurospora crassa GN=dbp-3 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.871e-38
Identity = 79/123 (64.23%), Postives = 95/123 (77.24%), Query Frame = 3
Query:    3 LENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHVK 371
            +E  L R G KV +IHG   Q +RT+SL  FK GT  ++VATDVAARGLDIP+V++VIN +FPLT EDYVHRIGRTGRAGK G + T FT H+KA +G LVN+LR A+Q VP+ LLKFGT VK
Sbjct:  466 VEQFLSRKGIKVASIHGDLRQDQRTRSLEAFKSGTTTVLVATDVAARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGKLGKAITLFTEHDKAHSGSLVNILRAAKQPVPEELLKFGTTVK 588          
The following BLAST results are available for this feature:
BLAST of CX289373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH5_ORYSJ3.752e-5582.11DEAD-box ATP-dependent RNA helicase 5 OS=Oryza sat... [more]
RH5_ARATH7.077e-5483.74DEAD-box ATP-dependent RNA helicase 5 OS=Arabidops... [more]
DBP3_PICGU2.611e-4065.85ATP-dependent RNA helicase DBP3 OS=Pichia guillier... [more]
DBP3_PHANO3.410e-4064.23ATP-dependent RNA helicase DBP3 OS=Phaeosphaeria n... [more]
DBP3_DEBHA1.296e-3963.41ATP-dependent RNA helicase DBP3 OS=Debaryomyces ha... [more]
DBP3_PICST1.692e-3962.60ATP-dependent RNA helicase DBP3 OS=Pichia stipitis... [more]
DBP3_BOTFB3.770e-3962.60ATP-dependent RNA helicase dbp3 OS=Botryotinia fuc... [more]
DBP3_SCLS14.924e-3962.60ATP-dependent RNA helicase dbp3 OS=Sclerotinia scl... [more]
DBP3_LODEL8.398e-3960.98ATP-dependent RNA helicase DBP3 OS=Lodderomyces el... [more]
DBP3_NEUCR1.871e-3864.23ATP-dependent RNA helicase dbp-3 OS=Neurospora cra... [more]

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Properties
Property NameValue
Genbank descriptionC02012C12SK IF1 Citrus clementina cDNA clone C02012C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289373 ID=CX289373; Name=CX289373; organism=Citrus clementina; type=EST; length=372bp
GTCTTGAAAATATGCTGCGGCGAAGTGGTTGGAAGGTCGTTGCAATACAT
GGTAAGAAAGCACAGCATGAACGTACAAAGTCACTGTCATTATTCAAGGA
GGGAACTTGTCCATTGATGGTTGCTACTGACGTTGCTGCTCGAGGATTGG
ATATTCCAGATGTTGAAGTAGTTATTAACTATTCTTTCCCTTTAACCACG
GAGGATTATGTTCACAGAATTGGTAGGACTGGCCGGGCCGGTAAGAAGGG
TGTCTCTCACACATTCTTCACAAATCATAATAAGGCACTTGCTGGGGAGC
TGGTGAATGTTCTCAGAGAAGCTAGACAAGTTGTGCCAGATGCTCTTCTG
AAATTTGGCACTCATGTAAAGA
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