CX289373
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX289373 vs. ExPASy Swiss-Prot
Match: RH5_ORYSJ (DEAD-box ATP-dependent RNA helicase 5 OS=Oryza sativa subsp. japonica GN=Os07g0301200 PE=2 SV=1) HSP 1 Score: 213.001 bits (541), Expect = 3.752e-55 Identity = 101/123 (82.11%), Postives = 112/123 (91.06%), Query Frame = 3 Query: 3 LENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHVK 371 +E ML+R GW V++HG KAQH+RTK+LSLFKEG+CPLM+ATDVA+RGLDIPDVEVVINYS+PLTTEDYVHRIGRTGRAGKKGV+HTFFT NK LAGELVNVLREA QVVP AL KFGTHVK Sbjct: 358 VETMLQRRGWSAVSVHGDKAQHDRTKALSLFKEGSCPLMIATDVASRGLDIPDVEVVINYSYPLTTEDYVHRIGRTGRAGKKGVAHTFFTQENKGLAGELVNVLREAGQVVPPALTKFGTHVK 480
BLAST of CX289373 vs. ExPASy Swiss-Prot
Match: RH5_ARATH (DEAD-box ATP-dependent RNA helicase 5 OS=Arabidopsis thaliana GN=RH5 PE=1 SV=1) HSP 1 Score: 208.764 bits (530), Expect = 7.077e-54 Identity = 103/123 (83.74%), Postives = 111/123 (90.24%), Query Frame = 3 Query: 3 LENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHVK 371 LE L++ GWK V+IHG KAQ ERT+SLSLFKEG+CPL+VATDVAARGLDIPDVEVVINY+FPLTTEDYVHRIGRTGRAGKKGV+HTFFT NK LAGELVNVLREA QVVP LLKFGTHVK Sbjct: 382 LERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFTPLNKGLAGELVNVLREAGQVVPADLLKFGTHVK 504
BLAST of CX289373 vs. ExPASy Swiss-Prot
Match: DBP3_PICGU (ATP-dependent RNA helicase DBP3 OS=Pichia guilliermondii GN=DBP3 PE=3 SV=2) HSP 1 Score: 163.696 bits (413), Expect = 2.611e-40 Identity = 81/123 (65.85%), Postives = 96/123 (78.05%), Query Frame = 3 Query: 3 LENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHVK 371 +E MLRRSG+ V AIHG +Q +RT +L FK G L++ATDVAARGLDIP+V+VVIN +FPLT EDYVHRIGRTGRAG+ G++HT FT H K L+G L+NVLR A Q VPD LLKFG H K Sbjct: 386 VEAMLRRSGFNVAAIHGDLSQQQRTSALDSFKRGDSNLLLATDVAARGLDIPNVKVVINLTFPLTVEDYVHRIGRTGRAGQTGIAHTLFTEHEKHLSGALMNVLRGAGQPVPDELLKFGGHTK 508
BLAST of CX289373 vs. ExPASy Swiss-Prot
Match: DBP3_PHANO (ATP-dependent RNA helicase DBP3 OS=Phaeosphaeria nodorum GN=DBP3 PE=3 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 3.410e-40 Identity = 79/123 (64.23%), Postives = 99/123 (80.49%), Query Frame = 3 Query: 3 LENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHVK 371 +EN +R G++V IHG +Q +R+ SL+ FKEG PL+VATDVAARGLDIP V++VIN +FPLT EDYVHRIGRTGRAGK+G++ TFFT H+K L+G L+NVL+ A Q VP+ LLKFGT VK Sbjct: 444 IENFIRMKGFRVGGIHGDLSQEKRSASLAAFKEGQVPLLVATDVAARGLDIPAVKLVINVTFPLTAEDYVHRIGRTGRAGKEGLAITFFTEHDKGLSGSLINVLKAANQEVPEELLKFGTTVK 566
BLAST of CX289373 vs. ExPASy Swiss-Prot
Match: DBP3_DEBHA (ATP-dependent RNA helicase DBP3 OS=Debaryomyces hansenii GN=DBP3 PE=3 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 1.296e-39 Identity = 78/123 (63.41%), Postives = 96/123 (78.05%), Query Frame = 3 Query: 3 LENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHVK 371 +EN+L R+ +KV A+HG +Q +RT +L FK G L++ATDVAARGLDIP+V+VVIN +FPLT EDYVHRIGRTGRAG+ G++HT FT H K L+G L+NVLR A Q VPD LLKFG H K Sbjct: 379 IENLLVRNSFKVSAVHGDLSQQQRTSALGAFKAGKTTLLLATDVAARGLDIPNVKVVINLTFPLTVEDYVHRIGRTGRAGQTGIAHTLFTEHEKHLSGALMNVLRGANQPVPDELLKFGGHTK 501
BLAST of CX289373 vs. ExPASy Swiss-Prot
Match: DBP3_PICST (ATP-dependent RNA helicase DBP3 OS=Pichia stipitis GN=DBP3 PE=3 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 1.692e-39 Identity = 77/123 (62.60%), Postives = 96/123 (78.05%), Query Frame = 3 Query: 3 LENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHVK 371 +E +LRR+ + V AIHG +Q +RT +L+ FK+G L++ATDVAARGLDIP+V+VVIN +FPLT EDYVHRIGRTGRAG+ G +HT FT H K L+G L+N+LR A Q VPD LLKFG H K Sbjct: 378 IEGLLRRNSYNVAAIHGDLSQQQRTNALNSFKKGESSLLLATDVAARGLDIPNVKVVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEHEKHLSGALMNILRGANQPVPDELLKFGGHTK 500
BLAST of CX289373 vs. ExPASy Swiss-Prot
Match: DBP3_BOTFB (ATP-dependent RNA helicase dbp3 OS=Botryotinia fuckeliana (strain B05.10) GN=dbp3 PE=3 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 3.770e-39 Identity = 77/123 (62.60%), Postives = 97/123 (78.86%), Query Frame = 3 Query: 3 LENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHVK 371 +E+ +R+ G++V IHG +Q +RT+SL FK G P++VATDVAARGLDIP V++VIN +FPLT EDYVHRIGRTGRAGK G++ T FT H+KA +G L+NVL+ A Q VPD LLKFGT VK Sbjct: 444 VESFIRQKGFRVAGIHGDLSQEQRTRSLEAFKSGNTPVLVATDVAARGLDIPAVKLVINCTFPLTVEDYVHRIGRTGRAGKDGLAITLFTEHDKAQSGALINVLKAANQPVPDELLKFGTTVK 566
BLAST of CX289373 vs. ExPASy Swiss-Prot
Match: DBP3_SCLS1 (ATP-dependent RNA helicase dbp3 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp3 PE=3 SV=2) HSP 1 Score: 159.458 bits (402), Expect = 4.924e-39 Identity = 77/123 (62.60%), Postives = 96/123 (78.05%), Query Frame = 3 Query: 3 LENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHVK 371 +E +R+ G++V IHG +Q +RT+SL FK G P++VATDVAARGLDIP V++VIN +FPLT EDYVHRIGRTGRAGK G++ T FT H+KA +G L+NVL+ A Q VPD LLKFGT VK Sbjct: 448 VEGFIRQKGFRVAGIHGDLSQEQRTRSLEAFKSGNTPVLVATDVAARGLDIPAVKLVINCTFPLTVEDYVHRIGRTGRAGKDGLAITLFTEHDKAQSGALINVLKAANQPVPDELLKFGTTVK 570
BLAST of CX289373 vs. ExPASy Swiss-Prot
Match: DBP3_LODEL (ATP-dependent RNA helicase DBP3 OS=Lodderomyces elongisporus GN=DBP3 PE=3 SV=2) HSP 1 Score: 158.688 bits (400), Expect = 8.398e-39 Identity = 75/123 (60.98%), Postives = 97/123 (78.86%), Query Frame = 3 Query: 3 LENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHVK 371 +E++L R+ +KV AIHG +Q +RT++L FK G C L++ATDVAARGLDIP+V+ VIN +FPLT EDYVHR+GRTGRAG+ G++HTFFT K L+G L N+LR A Q VP+ALLK+G H K Sbjct: 390 IESLLHRNKFKVAAIHGDLSQQQRTQALQSFKSGECNLLLATDVAARGLDIPNVKYVINLTFPLTIEDYVHRLGRTGRAGQTGIAHTFFTEDEKHLSGALCNILRGANQPVPEALLKYGGHTK 512
BLAST of CX289373 vs. ExPASy Swiss-Prot
Match: DBP3_NEUCR (ATP-dependent RNA helicase dbp-3 OS=Neurospora crassa GN=dbp-3 PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 1.871e-38 Identity = 79/123 (64.23%), Postives = 95/123 (77.24%), Query Frame = 3 Query: 3 LENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHVK 371 +E L R G KV +IHG Q +RT+SL FK GT ++VATDVAARGLDIP+V++VIN +FPLT EDYVHRIGRTGRAGK G + T FT H+KA +G LVN+LR A+Q VP+ LLKFGT VK Sbjct: 466 VEQFLSRKGIKVASIHGDLRQDQRTRSLEAFKSGTTTVLVATDVAARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGKLGKAITLFTEHDKAHSGSLVNILRAAKQPVPEELLKFGTTVK 588 The following BLAST results are available for this feature:
BLAST of CX289373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX289373 ID=CX289373; Name=CX289373; organism=Citrus clementina; type=EST; length=372bpback to top |