CX289383

Overview
NameCX289383
Unique NameCX289383
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length394
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289383 vs. ExPASy Swiss-Prot
Match: RFS1_ARATH (Probable galactinol--sucrose galactosyltransferase 1 OS=Arabidopsis thaliana GN=RFS1 PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 1.740e-68
Identity = 120/131 (91.60%), Postives = 127/131 (96.95%), Query Frame = 1
Query:    1 KVDVQNILETLGAGHGGRVKLSRKYHQALEASIARNFRNNDIICCMSHNTDGLYSAKRSAVIRASDDFWPRDPASHTIHIASVAYNTIFLGEFMQPDWDMFHSLHPMAEYHGAARAVGGCAIYVSDKPGQH 393
            KVDVQNILETLGAGHGGRVKL++KYHQALEASI+RNF +N II CMSHNTDGLYSAK++AVIRASDDFWPRDPASHTIHIASVAYNT+FLGEFMQPDWDMFHSLHPMAEYH AARAVGGCAIYVSDKPGQH
Sbjct:  387 KVDVQNILETLGAGHGGRVKLAKKYHQALEASISRNFPDNGIISCMSHNTDGLYSAKKTAVIRASDDFWPRDPASHTIHIASVAYNTLFLGEFMQPDWDMFHSLHPMAEYHAAARAVGGCAIYVSDKPGQH 517          
BLAST of CX289383 vs. ExPASy Swiss-Prot
Match: RFS2_ARATH (Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana GN=RFS2 PE=2 SV=2)

HSP 1 Score: 233.802 bits (595), Expect = 2.060e-61
Identity = 109/131 (83.21%), Postives = 119/131 (90.84%), Query Frame = 1
Query:    1 KVDVQNILETLGAGHGGRVKLSRKYHQALEASIARNFRNNDIICCMSHNTDGLYSAKRSAVIRASDDFWPRDPASHTIHIASVAYNTIFLGEFMQPDWDMFHSLHPMAEYHGAARAVGGCAIYVSDKPGQH 393
            KVDVQNI+ETLGAG GGRV L+R Y QALEASIARNF +N  I CM HNTDGLYSAK++A++RASDDF+PRDPASHTIHIASVAYN++FLGEFMQPDWDMFHSLHP AEYH AARAVGGCAIYVSDKPG H
Sbjct:  383 KVDVQNIIETLGAGLGGRVSLTRSYQQALEASIARNFTDNGCISCMCHNTDGLYSAKQTAIVRASDDFYPRDPASHTIHIASVAYNSLFLGEFMQPDWDMFHSLHPTAEYHAAARAVGGCAIYVSDKPGNH 513          
BLAST of CX289383 vs. ExPASy Swiss-Prot
Match: RFS6_ARATH (Probable galactinol--sucrose galactosyltransferase 6 OS=Arabidopsis thaliana GN=RFS6 PE=2 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 3.185e-54
Identity = 94/131 (71.76%), Postives = 115/131 (87.79%), Query Frame = 1
Query:    1 KVDVQNILETLGAGHGGRVKLSRKYHQALEASIARNFRNNDIICCMSHNTDGLYSAKRSAVIRASDDFWPRDPASHTIHIASVAYNTIFLGEFMQPDWDMFHSLHPMAEYHGAARAVGGCAIYVSDKPGQH 393
            KVDVQ +LETLG G GGRV+L+R++HQAL++S+A+NF +N  I CMSHNTD LY +K++AVIRASDDF+PRDP SHTIHIASVAYN++FLGEFMQPDWDMFHS+HP AEYH +ARA+ G  +YVSD PG+H
Sbjct:  381 KVDVQCVLETLGGGLGGRVELTRQFHQALDSSVAKNFPDNGCIACMSHNTDALYCSKQAAVIRASDDFYPRDPVSHTIHIASVAYNSVFLGEFMQPDWDMFHSVHPAAEYHASARAISGGPLYVSDSPGKH 511          
BLAST of CX289383 vs. ExPASy Swiss-Prot
Match: RFS5_ARATH (Probable galactinol--sucrose galactosyltransferase 5 OS=Arabidopsis thaliana GN=RFS5 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.335e-27
Identity = 59/140 (42.14%), Postives = 85/140 (60.71%), Query Frame = 1
Query:    1 KVDVQNILETLGAGHGGRVKLSRKYHQALEASIARNFRNNDIICCMSHNTDGLYSAKRSAVI-RASDDFWPRDPASHT--------IHIASVAYNTIFLGEFMQPDWDMFHSLHPMAEYHGAARAVGGCAIYVSDKPGQH 393
            KVDV +ILE L   +GGRV L++ Y +AL +S+ ++F  N +I  M H  D ++    +  + R  DDFW  DP+            H+   AYN++++G F+QPDWDMF S HP AE+H A+RA+ G  IY+SD  G+H
Sbjct:  411 KVDVIHILEMLCQKYGGRVDLAKAYFKALTSSVNKHFNGNGVIASMEHCNDFMFLGTEAISLGRVGDDFWCTDPSGDPNGTFWLQGCHMVHCAYNSLWMGNFIQPDWDMFQSTHPCAEFHAASRAISGGPIYISDCVGKH 550          
BLAST of CX289383 vs. ExPASy Swiss-Prot
Match: RFS_PEA (Galactinol--sucrose galactosyltransferase OS=Pisum sativum GN=RFS PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.658e-27
Identity = 58/140 (41.43%), Postives = 86/140 (61.43%), Query Frame = 1
Query:    1 KVDVQNILETLGAGHGGRVKLSRKYHQALEASIARNFRNNDIICCMSHNTDG-LYSAKRSAVIRASDDFWPRDPASHT--------IHIASVAYNTIFLGEFMQPDWDMFHSLHPMAEYHGAARAVGGCAIYVSDKPGQH 393
            KVDV ++LE L   +GGRV+L++ Y++AL +S+ ++F+ N +I  M H  D  L   +  ++ R  DDFW  DP+            H+   AYN++++G F+ PDWDMF S HP AE+H A+RA+ G  +YVSD  G H
Sbjct:  424 KVDVIHLLELLSEEYGGRVELAKAYYKALTSSVNKHFKGNGVIASMEHCNDFFLLGTEAISLGRVGDDFWCCDPSGDPNGTYWLQGCHMVHCAYNSLWMGNFIHPDWDMFQSTHPCAEFHAASRAISGGPVYVSDCVGNH 563          
BLAST of CX289383 vs. ExPASy Swiss-Prot
Match: RFS_ORYSJ (Galactinol--sucrose galactosyltransferase OS=Oryza sativa subsp. japonica GN=RFS PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.040e-25
Identity = 58/140 (41.43%), Postives = 80/140 (57.14%), Query Frame = 1
Query:    1 KVDVQNILETLGAGHGGRVKLSRKYHQALEASIARNFRNNDIICCMSHNTDG-LYSAKRSAVIRASDDFWPRDPASHT--------IHIASVAYNTIFLGEFMQPDWDMFHSLHPMAEYHGAARAVGGCAIYVSDKPGQH 393
            KVDV ++LE +   +GGRV+L++ Y   L  S+ R+F  N +I  M H  D  L   +  A+ R  DDFW  DP+            H+   AYN++++G F+ PDWDMF S HP A +H A+RAV G  +YVSD  G H
Sbjct:  409 KVDVIHLLEMVCEEYGGRVELAKAYFAGLTESVRRHFNGNGVIASMEHCNDFMLLGTEAVALGRVGDDFWCTDPSGDPDGTFWLQGCHMVHCAYNSLWMGAFIHPDWDMFQSTHPCAAFHAASRAVSGGPVYVSDAVGCH 548          
BLAST of CX289383 vs. ExPASy Swiss-Prot
Match: RFS4_ARATH (Probable galactinol--sucrose galactosyltransferase 4 OS=Arabidopsis thaliana GN=RFS4 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 2.014e-24
Identity = 55/139 (39.57%), Postives = 83/139 (59.71%), Query Frame = 1
Query:    1 KVDVQNILETLGAGHGGRVKLSRKYHQALEASIARNFRNNDIICCMSHNTDGLYSA-KRSAVIRASDDFWPRDPASHT--------IHIASVAYNTIFLGEFMQPDWDMFHSLHPMAEYHGAARAVGGCAIYVSDKPGQ 390
            K+DV   LE+L   HGGRV+L++ Y+  L  S+ +NF   D+I  M    +  + A K+ ++ R  DDFW +DP            +H+   +YN+I++G+ +QPDWDMF S H  AEYH A+RA+ G  +Y+SD  G+
Sbjct:  495 KIDVFQTLESLAEEHGGRVELAKAYYDGLTESMIKNFNGTDVIASMQQCNEFFFLATKQISIGRVGDDFWWQDPYGDPQGVYWLQGVHMIHCSYNSIWMGQMIQPDWDMFQSDHVCAEYHAASRAICGGPVYLSDHLGK 633          
BLAST of CX289383 vs. ExPASy Swiss-Prot
Match: STSYN_PEA (Stachyose synthase OS=Pisum sativum GN=STS1 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.705e-23
Identity = 55/140 (39.29%), Postives = 82/140 (58.57%), Query Frame = 1
Query:    1 KVDVQNILETLGAGHGGRVKLSRKYHQALEASIARNFRNNDIICCMSHNTDGLY-SAKRSAVIRASDDFWPRDPASHT--------IHIASVAYNTIFLGEFMQPDWDMFHSLHPMAEYHGAARAVGGCAIYVSDKPGQH 393
            KVDV + LE +   +GGRV L++ Y++ L  SI +NF  N +I  M H  D  +   K+ ++ R  DDFW +DP            +H+   +YN++++G+ +QPDWDMF S H  A++H  +RA+ G  IYVSD  G H
Sbjct:  479 KVDVIHSLEYVCDEYGGRVDLAKVYYEGLTKSIVKNFNGNGMIASMQHCNDFFFLGTKQISMGRVGDDFWFQDPNGDPMGSFWLQGVHMIHCSYNSLWMGQMIQPDWDMFQSDHVCAKFHAGSRAICGGPIYVSDNVGSH 618          
The following BLAST results are available for this feature:
BLAST of CX289383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
RFS1_ARATH1.740e-6891.60Probable galactinol--sucrose galactosyltransferase... [more]
RFS2_ARATH2.060e-6183.21Probable galactinol--sucrose galactosyltransferase... [more]
RFS6_ARATH3.185e-5471.76Probable galactinol--sucrose galactosyltransferase... [more]
RFS5_ARATH4.335e-2742.14Probable galactinol--sucrose galactosyltransferase... [more]
RFS_PEA9.658e-2741.43Galactinol--sucrose galactosyltransferase OS=Pisum... [more]
RFS_ORYSJ9.040e-2541.43Galactinol--sucrose galactosyltransferase OS=Oryza... [more]
RFS4_ARATH2.014e-2439.57Probable galactinol--sucrose galactosyltransferase... [more]
STSYN_PEA1.705e-2339.29Stachyose synthase OS=Pisum sativum GN=STS1 PE=1 S... [more]
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Properties
Property NameValue
Genbank descriptionC02012D12SK IF1 Citrus clementina cDNA clone C02012D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289383 ID=CX289383; Name=CX289383; organism=Citrus clementina; type=EST; length=394bp
AAAGTTGATGTCCAGAACATACTTGAAACTCTTGGGGCAGGCCATGGTGG
AAGAGTGAAACTTTCTAGAAAGTACCATCAGGCATTAGAAGCCTCTATTG
CTAGAAACTTCCGCAACAATGATATTATTTGTTGTATGAGTCACAACACA
GATGGTTTGTACAGTGCAAAGAGATCAGCTGTTATAAGGGCCTCAGATGA
TTTCTGGCCAAGAGATCCAGCATCACACACAATTCACATTGCATCAGTTG
CATACAACACCATTTTCCTTGGTGAATTTATGCAGCCAGATTGGGATATG
TTTCATAGTCTACACCCAATGGCTGAATACCATGGAGCTGCTCGTGCAGT
GGGAGGATGTGCCATTTATGTCAGTGACAAGCCAGGACAACATG
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