CX289384

Overview
NameCX289384
Unique NameCX289384
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length419
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289384 vs. ExPASy Swiss-Prot
Match: PSD12_PONAB (26S proteasome non-ATPase regulatory subunit 12 OS=Pongo abelii GN=PSMD12 PE=2 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 4.194e-30
Identity = 66/137 (48.18%), Postives = 94/137 (68.61%), Query Frame = 3
Query:    9 IVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKK 419
            I+ LSK+R QLK            Y+++  DL  ++ LI TL  V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+G+M K E++ FILEQ+RLCL  +DY+R QI+S+KI+ + F  + +++ K
Sbjct:   87 IMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTEKLK 223          
BLAST of CX289384 vs. ExPASy Swiss-Prot
Match: PSD12_HUMAN (26S proteasome non-ATPase regulatory subunit 12 OS=Homo sapiens GN=PSMD12 PE=1 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 4.194e-30
Identity = 66/137 (48.18%), Postives = 94/137 (68.61%), Query Frame = 3
Query:    9 IVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKK 419
            I+ LSK+R QLK            Y+++  DL  ++ LI TL  V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+G+M K E++ FILEQ+RLCL  +DY+R QI+S+KI+ + F  + +++ K
Sbjct:   87 IMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTEKLK 223          
BLAST of CX289384 vs. ExPASy Swiss-Prot
Match: PSD12_BOVIN (26S proteasome non-ATPase regulatory subunit 12 OS=Bos taurus GN=PSMD12 PE=2 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 4.194e-30
Identity = 66/137 (48.18%), Postives = 94/137 (68.61%), Query Frame = 3
Query:    9 IVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKK 419
            I+ LSK+R QLK            Y+++  DL  ++ LI TL  V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+G+M K E++ FILEQ+RLCL  +DY+R QI+S+KI+ + F  + +++ K
Sbjct:   87 IMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTEKLK 223          
BLAST of CX289384 vs. ExPASy Swiss-Prot
Match: PSD12_DICDI (26S proteasome non-ATPase regulatory subunit 12 OS=Dictyostelium discoideum GN=psmD12 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.594e-29
Identity = 60/138 (43.48%), Postives = 96/138 (69.57%), Query Frame = 3
Query:    6 QIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKK 419
            ++V LSK+RGQL+            Y+DQ  D+  ++ELI TL ++S GKI+VE ERARL K L+KIKE++G IA AA ++Q++ VET+G M K EKI F ++Q+R+C++ +D++RAQ++  K++ +    D +++ K
Sbjct:   87 KLVLLSKRRGQLRPAIKAIVQESMVYVDQITDMKQKLELIDTLRTISDGKIFVENERARLTKTLSKIKEDEGDIASAAKILQDLQVETYGTMEKREKITFFIDQMRICMNNKDFIRAQLIGNKVNRKTLAEDENQDLK 224          
BLAST of CX289384 vs. ExPASy Swiss-Prot
Match: PSD12_MOUSE (26S proteasome non-ATPase regulatory subunit 12 OS=Mus musculus GN=Psmd12 PE=2 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 2.719e-29
Identity = 65/137 (47.45%), Postives = 92/137 (67.15%), Query Frame = 3
Query:    9 IVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKK 419
            I+ LSK+R QLK            Y+++  DL  ++ LI TL  V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+G+M K E++ FILEQ+RLCL  +DY+R QI+S+KI+ +    + ++  K
Sbjct:   87 IMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPVKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFSQEENTENMK 223          
BLAST of CX289384 vs. ExPASy Swiss-Prot
Match: RPN5_SCHPO (26S proteasome regulatory subunit rpn5 OS=Schizosaccharomyces pombe GN=rpn5a PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.182e-24
Identity = 61/138 (44.20%), Postives = 87/138 (63.04%), Query Frame = 3
Query:    6 QIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKK 419
            Q+V+L KK GQLK            Y+    DL T+I LI+TL +++ GKIYVE+ERARL + L++IKEEQG I  A +++    VET+G+    EK+AFIL+QVRL L R DY  A   ++KI+ + F+ +  +  K
Sbjct:   74 QLVSLFKKHGQLKQSMTSLVQHVMTYLPGIDDLKTKINLIETLRTITDGKIYVEVERARLTQLLSQIKEEQGDIKSAQEILCNEPVETYGSFDLKEKVAFILDQVRLFLLRSDYYMASTYTKKINVKFFEKEDVQSLK 211          
BLAST of CX289384 vs. ExPASy Swiss-Prot
Match: RPN5_YEAST (26S proteasome regulatory subunit RPN5 OS=Saccharomyces cerevisiae GN=RPN5 PE=1 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 1.544e-24
Identity = 61/131 (46.56%), Postives = 87/131 (66.41%), Query Frame = 3
Query:    6 QIVNLSKKRGQLKXXXXXXXXXXXXYIDQTP--DLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVF 392
            Q+  LSKK GQLK            Y+  +   DL+TRI +I+T+  V+  KI+VE+ERAR+ K L +IK+E+G I EAAD++ E+ VET+G+M  +EKI FILEQ+ L + + DY +A +LSRKI  + F
Sbjct:   78 QLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTF 208          
The following BLAST results are available for this feature:
BLAST of CX289384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PSD12_PONAB4.194e-3048.1826S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_HUMAN4.194e-3048.1826S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_BOVIN4.194e-3048.1826S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_DICDI1.594e-2943.4826S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_MOUSE2.719e-2947.4526S proteasome non-ATPase regulatory subunit 12 OS... [more]
RPN5_SCHPO1.182e-2444.2026S proteasome regulatory subunit rpn5 OS=Schizosa... [more]
RPN5_YEAST1.544e-2446.5626S proteasome regulatory subunit RPN5 OS=Saccharo... [more]
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Properties
Property NameValue
Genbank descriptionC02012E03SK IF1 Citrus clementina cDNA clone C02012E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289384 ID=CX289384; Name=CX289384; organism=Citrus clementina; type=EST; length=419bp
CGAGGCAGATTGTTAATCTTTCCAAGAAACGCGGTCAACTCAAGCAGGCT
GTAACTGCAATGGTCCAGCAAGCAATGCAGTACATCGATCAGACGCCAGA
TCTTGATACTCGTATAGAGCTCATCAAAACACTAAATAGTGTCTCTGCAG
GGAAGATATATGTTGAAATTGAGAGGGCAAGGTTGATTAAAAAACTTGCA
AAGATTAAGGAAGAACAAGGGCTTATAGCGGAAGCTGCAGATCTGATGCA
AGAAGTGGCTGTGGAGACATTTGGTGCTATGGCAAAAACTGAGAAAATCG
CCTTCATTCTTGAACAAGTCCGTCTGTGCCTAGACCGCCAAGATTATGTC
CGTGCACAAATTCTTTCAAGGAAGATTAGTCCAAGAGTTTTTGATGCTGA
TCCTTCGAAAGAAAAGAAA
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