CX289387

Overview
NameCX289387
Unique NameCX289387
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length183
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289387 vs. ExPASy Swiss-Prot
Match: RIR1_ARATH (Ribonucleoside-diphosphate reductase large subunit OS=Arabidopsis thaliana GN=RNR1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 9.929e-24
Identity = 48/60 (80.00%), Postives = 54/60 (90.00%), Query Frame = 3
Query:    3 HALKTSSEIAAKEGPYETYHNSPVSKGIIQPDMWNVIPSDRWDWGVLKDMISKNGLRNPL 182
            HALK S+E+AA+ GPYETY  SPVSKGI+QPDMWNVIPSDRWDW VL+DMISKNG+RN L
Sbjct:  557 HALKASTELAARLGPYETYAGSPVSKGILQPDMWNVIPSDRWDWAVLRDMISKNGVRNSL 616          
BLAST of CX289387 vs. ExPASy Swiss-Prot
Match: RIR1_HUMAN (Ribonucleoside-diphosphate reductase large subunit OS=Homo sapiens GN=RRM1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.002e-17
Identity = 37/59 (62.71%), Postives = 47/59 (79.66%), Query Frame = 3
Query:    6 ALKTSSEIAAKEGPYETYHNSPVSKGIIQPDMWNVIPSDRWDWGVLKDMISKNGLRNPL 182
            AL+ S ++A ++GPYETY  SPVSKGI+Q DMWNV P+D WDW VLK+ I+K G+RN L
Sbjct:  539 ALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKYGIRNSL 597          
BLAST of CX289387 vs. ExPASy Swiss-Prot
Match: RIR1_PONAB (Ribonucleoside-diphosphate reductase large subunit OS=Pongo abelii GN=RRM1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.005e-16
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = 3
Query:    6 ALKTSSEIAAKEGPYETYHNSPVSKGIIQPDMWNVIPSDRWDWGVLKDMISKNGLRNPL 182
            AL+ S ++A ++GPYETY  SPVSKGI+Q DMWNV P+D WDW +LK+ I+K G+RN L
Sbjct:  539 ALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKYGIRNSL 597          
BLAST of CX289387 vs. ExPASy Swiss-Prot
Match: RIR1_MOUSE (Ribonucleoside-diphosphate reductase large subunit OS=Mus musculus GN=Rrm1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.835e-16
Identity = 37/59 (62.71%), Postives = 45/59 (76.27%), Query Frame = 3
Query:    6 ALKTSSEIAAKEGPYETYHNSPVSKGIIQPDMWNVIPSDRWDWGVLKDMISKNGLRNPL 182
            AL+ S E+A + GPYETY  SPVSKGI+Q DMWNV P+D WDW  LK+ I+K G+RN L
Sbjct:  539 ALEASCELAKEYGPYETYEGSPVSKGILQYDMWNVAPTDLWDWKPLKEKIAKYGIRNSL 597          
BLAST of CX289387 vs. ExPASy Swiss-Prot
Match: RIR1_SCHPO (Ribonucleoside-diphosphate reductase large chain OS=Schizosaccharomyces pombe GN=cdc22 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.100e-14
Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = 3
Query:    6 ALKTSSEIAAKEGPYETYHNSPVSKGIIQPDMWNVIPSDRWDWGVLKDMISKNGLRNPL 182
            AL+ S EIA  EG YE+Y  SP S+GI+Q DMWNV P+D WDW  LK+ I+K+G+RN L
Sbjct:  538 ALEASCEIAQVEGTYESYEGSPASQGILQYDMWNVNPTDLWDWAELKEKIAKHGIRNSL 596          
BLAST of CX289387 vs. ExPASy Swiss-Prot
Match: RIR1_DROME (Ribonucleoside-diphosphate reductase large subunit OS=Drosophila melanogaster GN=RnrL PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.877e-14
Identity = 34/59 (57.63%), Postives = 44/59 (74.58%), Query Frame = 3
Query:    6 ALKTSSEIAAKEGPYETYHNSPVSKGIIQPDMWNVIPSDRWDWGVLKDMISKNGLRNPL 182
            AL+ S E+A  EGPYETY  SPVSKGI+Q DMW+ +P++ WDW  LK+ I  +G+RN L
Sbjct:  550 ALEASCELAQTEGPYETYEGSPVSKGILQYDMWDKVPTNLWDWQKLKESIRMHGVRNSL 608          
BLAST of CX289387 vs. ExPASy Swiss-Prot
Match: RIR1_DANRE (Ribonucleoside-diphosphate reductase large subunit OS=Danio rerio GN=rrm1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.202e-14
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 3
Query:    6 ALKTSSEIAAKEGPYETYHNSPVSKGIIQPDMWNVIPSDRWDWGVLKDMISKNGLRNPL 182
            AL++S E+AA+ GPY+TY   PVSKGI+Q DMW   P+D WDW  LK+ I+ +G+RN L
Sbjct:  539 ALESSCELAAEYGPYQTYAGCPVSKGILQYDMWEKTPTDLWDWAALKEKIANDGVRNSL 597          
BLAST of CX289387 vs. ExPASy Swiss-Prot
Match: RIR1_VARV (Ribonucleoside-diphosphate reductase large subunit OS=Variola virus GN=I4L PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.461e-14
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 3
Query:    6 ALKTSSEIAAKEGPYETYHNSPVSKGIIQPDMWNVIPSDRWDWGVLKDMISKNGLRNPL 182
            AL+ S E+A KEGPY+TY  S  S GI+Q D+WNV+PSD W+W  LKD I   GLRN L
Sbjct:  538 ALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTYGLRNSL 596          
BLAST of CX289387 vs. ExPASy Swiss-Prot
Match: RIR1_VACCW (Ribonucleoside-diphosphate reductase large subunit OS=Vaccinia virus (strain Western Reserve) GN=VACWR073 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.461e-14
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 3
Query:    6 ALKTSSEIAAKEGPYETYHNSPVSKGIIQPDMWNVIPSDRWDWGVLKDMISKNGLRNPL 182
            AL+ S E+A KEGPY+TY  S  S GI+Q D+WNV+PSD W+W  LKD I   GLRN L
Sbjct:  538 ALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTYGLRNSL 596          
BLAST of CX289387 vs. ExPASy Swiss-Prot
Match: RIR1_VACCC (Ribonucleoside-diphosphate reductase large subunit OS=Vaccinia virus (strain Copenhagen) GN=I4L PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.461e-14
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 3
Query:    6 ALKTSSEIAAKEGPYETYHNSPVSKGIIQPDMWNVIPSDRWDWGVLKDMISKNGLRNPL 182
            AL+ S E+A KEGPY+TY  S  S GI+Q D+WNV+PSD W+W  LKD I   GLRN L
Sbjct:  538 ALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTYGLRNSL 596          
The following BLAST results are available for this feature:
BLAST of CX289387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RIR1_ARATH9.929e-2480.00Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_HUMAN9.002e-1762.71Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_PONAB2.005e-1661.02Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_MOUSE5.835e-1662.71Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_SCHPO1.100e-1459.32Ribonucleoside-diphosphate reductase large chain O... [more]
RIR1_DROME1.877e-1457.63Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_DANRE3.202e-1455.93Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_VARV5.461e-1459.32Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_VACCW5.461e-1459.32Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_VACCC5.461e-1459.32Ribonucleoside-diphosphate reductase large subunit... [more]

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Properties
Property NameValue
Genbank descriptionC02012E09SK IF1 Citrus clementina cDNA clone C02012E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289387 ID=CX289387; Name=CX289387; organism=Citrus clementina; type=EST; length=183bp
ACCATGCTCTGAAAACTTCTTCGGAGATAGCTGCAAAAGAAGGTCCCTAT
GAAACATATCATAATAGCCCTGTGAGCAAGGGAATTATCCAACCTGACAT
GTGGAATGTAATTCCATCAGATCGATGGGACTGGGGAGTACTTAAAGATA
TGATATCAAAGAATGGACTGAGAAATCCACTTC
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