CX289392

Overview
NameCX289392
Unique NameCX289392
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length395
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX289392 vs. ExPASy Swiss-Prot
Match: U497B_ARATH (UPF0497 membrane protein At2g37200 OS=Arabidopsis thaliana GN=At2g37200 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.157e-18
Identity = 48/73 (65.75%), Postives = 54/73 (73.97%), Query Frame = 3 
Query:  117 MFASRPAVHPVEAPPLTEAAGL----RVRMKDVQGMPGTPGGLVLRLLQFVFAAIAVSVMASTSDFHEATAFC 323
            M  SRPA+HPV+A P+   AG      VRMKDVQGMPGT GGL+LRL QFV A I+VSVM +TSDF  ATAFC
Sbjct:    2 MNVSRPAIHPVDALPVAPTAGAIDRPPVRMKDVQGMPGTTGGLILRLSQFVPALISVSVMVTTSDFRSATAFC 74
[Close]
BLAST of CX289392 vs. ExPASy Swiss-Prot
Match: U4977_ARATH (UPF0497 membrane protein At2g28370 OS=Arabidopsis thaliana GN=At2g28370 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.807e-15
Identity = 48/96 (50.00%), Postives = 54/96 (56.25%), Query Frame = 3 
Query:  117 MFASRPAVHPVEAPPL--TEAAGL-RVRMKDVQGMPGTPGGLVLRLLQFVFAAIAVSVMASTSDFHEATAFCYXXXXXXXXXXXXXXXXXXDIYAI 395
            M  S  +VHPVE PP   TE     RVRM D++GMPGT  GL LR  QF+FAA A+ VMASTSDF   TAFCY                  D+YAI
Sbjct:    1 MNVSHASVHPVEDPPAAATEVENPPRVRMDDMEGMPGTLLGLALRFFQFLFAAAALCVMASTSDFPSVTAFCYLVAATGLQSLWSLALAMVDVYAI 96
The following BLAST results are available for this feature:
BLAST of CX289392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
U497B_ARATH2.157e-1865.75UPF0497 membrane protein At2g37200 OS=Arabidopsis ... [more]
U4977_ARATH3.807e-1550.00UPF0497 membrane protein At2g28370 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionC02012F03SK IF1 Citrus clementina cDNA clone C02012F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289392 ID=CX289392; Name=CX289392; organism=Citrus clementina; type=EST; length=395bp
AGAACCGAAAATGGGTCGCTTTCTCCTTTCACTATATTCCCTTTAAGTGT
GGTAAGTAGGGTTTTTGATGGTCGACTTTTGGTCAAATTAATCGGGGGGG
CTTATAACCGAAAGCGATGTTCGCGAGCCGGCCAGCGGTGCACCCAGTGG
AGGCGCCACCGTTGACTGAGGCGGCGGGACTTAGAGTTAGAATGAAGGAT
GTGCAAGGCATGCCTGGGACACCTGGCGGCCTTGTTCTTCGTCTTCTTCA
GTTTGTTTTCGCAGCCATAGCAGTCTCTGTCATGGCCTCCACCAGTGATT
TTCACGAAGCCACCGCTTTTTGCTACCTAGTTCTTGCTCTAGGCTTGCAA
AGTTTGTGGAGTCTATCCCTGTTAGTGCTTGATATATATGCTATC
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