CX289393

Overview
NameCX289393
Unique NameCX289393
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length406
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289393 vs. ExPASy Swiss-Prot
Match: HT1_ARATH (Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.623e-21
Identity = 54/121 (44.63%), Postives = 74/121 (61.16%), Query Frame = 2
Query:   50 KWLIDPKHLFVGPRIGEGAHAKVYEGKYKNQTVAIKIVYKGETPEEI-AKKESRFAREVAMLSRVQHKNLVKFIGACKE-PVMVIVTELLSGGTLRKYLLNMRPRCLDVRVAIGFALDIAR 406
            +W  D   LF+G +   GAH+++Y G YK + VA+K+V      EE  AK E +F  EVA+LSR+ H N+V+FI ACK+ PV  I+TE +S G LR YL    P  L +   +  ALDI+R
Sbjct:   78 EWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPTHKEETRAKLEQQFKSEVALLSRLFHPNIVQFIAACKKPPVYCIITEYMSQGNLRMYLNKKEPYSLSIETVLRLALDISR 198          
BLAST of CX289393 vs. ExPASy Swiss-Prot
Match: YR831_MIMIV (Putative serine/threonine-protein kinase/receptor R831 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R831 PE=4 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.523e-11
Identity = 39/100 (39.00%), Postives = 59/100 (59.00%), Query Frame = 2
Query:   50 KWLIDPKHLFVGPRIGEGAHAKVYEGKYKNQTVAIKIVYKGETPEEIAKKESRFAREVAMLSRVQHKNLVKFIGAC-KEPVMVIVTELLSGGTLRKYLLN 346
            +W+I+   + +G +IG G++  V+ GK+K   VA+K   K +  E    +   F  E+A LS ++H N+V FIGAC K+P + IVTE +  G LR  L N
Sbjct: 1356 RWIINYDEISIGKQIGLGSYGIVFNGKWKGVDVAVKKFVKQKLSE---TQLLEFRAEMAFLSELKHSNIVTFIGACIKKPNICIVTEYMRMGNLRDVLKN 1452          
BLAST of CX289393 vs. ExPASy Swiss-Prot
Match: YR818_MIMIV (Putative serine/threonine-protein kinase/receptor R818 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R818 PE=4 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.523e-11
Identity = 37/103 (35.92%), Postives = 61/103 (59.22%), Query Frame = 2
Query:   50 KWLIDPKHLFVGPRIGEGAHAKVYEGKYKNQTVAIKIVYKGETPEEIAKKESRFAREVAMLSRVQHKNLVKFIGAC-KEPVMVIVTELLSGGTLRKYLLNMRP 355
            +W+I+   + +G +IG G++  V  GK+KN  VA+K   K +  E   K+   F  E+A LS+++H +++  IGAC K P + IVTE +  G+LR  +   +P
Sbjct: 1386 RWIINYDDIQIGKQIGVGSYGIVNMGKWKNINVAVKKFVKQKIDE---KQMLEFRAEIAFLSQLRHPHIILMIGACLKRPNICIVTEFMGNGSLRNVIKTTKP 1485          
BLAST of CX289393 vs. ExPASy Swiss-Prot
Match: MATK_RAT (Megakaryocyte-associated tyrosine-protein kinase OS=Rattus norvegicus GN=Matk PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.598e-11
Identity = 41/127 (32.28%), Postives = 65/127 (51.18%), Query Frame = 2
Query:   23 STDEFKLDAKWLIDPKHLFVGPRIGEGAHAKVYEGKYKNQTVAIKIVYKGETPEEIAKKESRFAREVAMLSRVQHKNLVKFIGACKEPVMVIVTELLSGGTLRKYLLNMRPRCLDVRVAIGFALDIA 403
            S +E    A WL+D +HL +G +IGEG    V +G+Y  Q VA+K +    T +        F  E A+++++QH+NLV+ +G      + IV E +S G L  +L       +     + FAL +A
Sbjct:  177 SAEEELAKAGWLLDLQHLTLGAQIGEGEFGAVLQGEYLGQKVAVKNIKCDVTAQ-------AFLDETAVMTKLQHRNLVRLLGVILHHGLYIVMEHVSKGNLVNFLRTRGRALVSTSQLLQFALHVA 296          
BLAST of CX289393 vs. ExPASy Swiss-Prot
Match: MATK_MOUSE (Megakaryocyte-associated tyrosine-protein kinase OS=Mus musculus GN=Matk PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.598e-11
Identity = 41/127 (32.28%), Postives = 65/127 (51.18%), Query Frame = 2
Query:   23 STDEFKLDAKWLIDPKHLFVGPRIGEGAHAKVYEGKYKNQTVAIKIVYKGETPEEIAKKESRFAREVAMLSRVQHKNLVKFIGACKEPVMVIVTELLSGGTLRKYLLNMRPRCLDVRVAIGFALDIA 403
            S +E    A WL+D +HL +G +IGEG    V +G+Y  Q VA+K +    T +        F  E A+++++QH+NLV+ +G      + IV E +S G L  +L       +     + FAL +A
Sbjct:  216 SAEEELAKAGWLLDLQHLTLGAQIGEGEFGAVLQGEYLGQKVAVKNIKCDVTAQ-------AFLDETAVMTKLQHRNLVRLLGVILHHGLYIVMEHVSKGNLVNFLRTRGRALVSTSQLLQFALHVA 335          
BLAST of CX289393 vs. ExPASy Swiss-Prot
Match: FER_HUMAN (Proto-oncogene tyrosine-protein kinase Fer OS=Homo sapiens GN=FER PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.787e-11
Identity = 38/122 (31.15%), Postives = 69/122 (56.56%), Query Frame = 2
Query:   44 DAKWLIDPKHLFVGPRIGEGAHAKVYEGKYKNQTVAIKIVYKGETPEEIAKKESRFAREVAMLSRVQHKNLVKFIGAC--KEPVMVIVTELLSGGTLRKYLLNMRPRCLDVRVAIGFALDIA 403
            D KW++  + + +G  +G+G   +VY+G  K++T       K + P+E+   + +F +E  +L +  H N+VK IG C  ++PV +I+ EL+SGG    +L   +   L ++  + F+LD A
Sbjct:  553 DKKWILSHEDVILGELLGKGNFGEVYKGTLKDKTSVAVKTCKEDLPQEL---KIKFLQEAKILKQYDHPNIVKLIGVCTQRQPVYIIM-ELVSGGDFLTFLRRKKDE-LKLKQLVKFSLDAA 669          
BLAST of CX289393 vs. ExPASy Swiss-Prot
Match: Y9844_DICDI (Probable serine/threonine-protein kinase DDB_G0282963 OS=Dictyostelium discoideum GN=DDB_G0282963 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.558e-11
Identity = 39/108 (36.11%), Postives = 61/108 (56.48%), Query Frame = 2
Query:    5 SGSRFYSTDEFKLDAKWLIDPKHLFVGPRIGEGAHAKVYEGKYKNQTVAIKIVYKGETPEEIAKKESRFAREVAMLSRVQHKNLVKFIGACKEPVMVIVTELLSGGTL 328
            +G  + + +  +   +W I    LF+  +IG G+ +KVY+ KY  + VAIK++    T E+I      F +E  +LS V  +NL+KF GACKE  + +VTE    G+L
Sbjct: 1454 NGECWKNAERPRTGVRW-ISSTDLFLIKKIGAGSFSKVYKAKYMGEIVAIKVLKGEATSEQI----ELFKKEYDILSLVSSQNLIKFYGACKEKKLRMVTEYCQHGSL 1556          
BLAST of CX289393 vs. ExPASy Swiss-Prot
Match: ROCO9_DICDI (Probable serine/threonine-protein kinase roco9 OS=Dictyostelium discoideum GN=roco9 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.558e-11
Identity = 43/117 (36.75%), Postives = 65/117 (55.56%), Query Frame = 2
Query:   56 LIDPKHLFVGPR-IGEGAHAKVYEGKYKNQTVAIKIVYKGETPEEIAKKESRFAREVAMLSRVQHKNLVKFIGACKEPVMVIVTELLSGGTLRKYLLNMRPRCLDVRVAIGFALDIA 403
            LID K + + P  IGEG  A VY+GK++   VAIK++       + +K  + + RE+  LS   H N++   G C EP + I+TE  SGG L  Y+ +++   LD ++ I  A  IA
Sbjct: 3001 LIDFKEVELDPNPIGEGGTATVYKGKWRQSDVAIKLLKTDVVGSDFSKVFAEYRREIFCLSSFIHDNILDLKGFCLEP-LAIITEFQSGGNLYDYIHDLK-NPLDWQLRIKIAKGIA 3115          
BLAST of CX289393 vs. ExPASy Swiss-Prot
Match: PYK1_DICDI (Dual specificity protein kinase pyk1 OS=Dictyostelium discoideum GN=splA PE=1 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 7.558e-11
Identity = 46/128 (35.94%), Postives = 74/128 (57.81%), Query Frame = 2
Query:   47 AKWLIDPKHLFVGPRIGEGAHAKVYEGKYKNQTVAIKIVYKGETPEEIAKKES--RFAREVAMLSRVQHKNLVKFIGACK---EPVMVIVTELLSGGTLRKYL---LNMRPRCLDVRVAIGFALDIAR 406
            +++ ID   L  G  IG+G   +V  G ++   VAIKI+Y+    ++   K S   F  EV +LS+++H N+V+F+GAC    E    IVTE + GG+LR++L    N+  +   +R+ +  ALDIA+
Sbjct: 2106 SEYEIDFNELEFGQTIGKGFFGEVKRGYWRETDVAIKIIYR----DQFKTKSSLVMFQNEVGILSKLRHPNVVQFLGACTAGGEDHHCIVTEWMGGGSLRQFLTDHFNLLEQNPHIRLKL--ALDIAK 2227          
BLAST of CX289393 vs. ExPASy Swiss-Prot
Match: FGFR1_DROME (Fibroblast growth factor receptor homolog 1 OS=Drosophila melanogaster GN=htl PE=2 SV=3)

HSP 1 Score: 65.4698 bits (158), Expect = 9.871e-11
Identity = 38/111 (34.23%), Postives = 61/111 (54.95%), Query Frame = 2
Query:   32 EFKLDAKWLIDPKHLFVGPRIGEGAHAKVYEGKYKNQTVAIKIVYKGETPEEIAKKESRFAREVAMLSRV-QHKNLVKFIGACKE--PVMVIVTELLSGGTLRKYLLNMRP 355
            EF LD+ W +   HL +G  +GEGA  +V   +  N  VA+K+V +G T ++IA       RE+ ++  + +H N++  +G C +  P+ VIV E    G L+ +L   RP
Sbjct:  402 EFPLDSNWELPRSHLVLGATLGEGAFGRVVMAEVNNAIVAVKMVKEGHTDDDIAS----LVREMEVMKIIGRHINIINLLGCCSQNGPLYVIV-EYAPHGNLKDFLYKNRP 507          
The following BLAST results are available for this feature:
BLAST of CX289393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
HT1_ARATH1.623e-2144.63Serine/threonine-protein kinase HT1 OS=Arabidopsis... [more]
YR831_MIMIV1.523e-1139.00Putative serine/threonine-protein kinase/receptor ... [more]
YR818_MIMIV1.523e-1135.92Putative serine/threonine-protein kinase/receptor ... [more]
MATK_RAT2.598e-1132.28Megakaryocyte-associated tyrosine-protein kinase O... [more]
MATK_MOUSE2.598e-1132.28Megakaryocyte-associated tyrosine-protein kinase O... [more]
FER_HUMAN5.787e-1131.15Proto-oncogene tyrosine-protein kinase Fer OS=Homo... [more]
Y9844_DICDI7.558e-1136.11Probable serine/threonine-protein kinase DDB_G0282... [more]
ROCO9_DICDI7.558e-1136.75Probable serine/threonine-protein kinase roco9 OS=... [more]
PYK1_DICDI7.558e-1135.94Dual specificity protein kinase pyk1 OS=Dictyostel... [more]
FGFR1_DROME9.871e-1134.23Fibroblast growth factor receptor homolog 1 OS=Dro... [more]

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Properties
Property NameValue
Genbank descriptionC02012F04SK IF1 Citrus clementina cDNA clone C02012F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289393 ID=CX289393; Name=CX289393; organism=Citrus clementina; type=EST; length=406bp
GGAATCTGGGAGTAGGTTTTACTCGACCGATGAGTTCAAGTTGGATGCTA
AATGGCTAATTGATCCCAAGCATCTTTTTGTTGGACCAAGGATTGGAGAG
GGAGCCCATGCCAAAGTATACGAGGGAAAATACAAAAACCAGACTGTTGC
TATTAAAATTGTTTATAAAGGAGAAACTCCAGAGGAGATCGCCAAGAAAG
AATCACGGTTTGCAAGAGAAGTTGCAATGTTATCTAGAGTTCAACATAAA
AATTTAGTGAAGTTTATTGGTGCCTGTAAAGAGCCTGTAATGGTGATAGT
TACTGAGCTTTTATCAGGAGGTACACTGCGTAAATACTTGCTGAACATGC
GGCCAAGGTGCTTAGACGTTCGTGTTGCAATTGGTTTTGCACTTGATATT
GCTCGT
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